Experiment set1IT068 for Variovorax sp. OAS795

Compare to:

Sodium propionate carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS13860 -6.4 -3.9 hypothetical protein compare
ABID97_RS13945 -4.4 -6.0 acyl-CoA carboxylase subunit beta compare
ABID97_RS13870 -4.2 -4.1 hypothetical protein compare
ABID97_RS23225 -3.9 -8.3 glutamate synthase-related protein compare
ABID97_RS01565 -3.7 -7.9 DNA starvation/stationary phase protection protein compare
ABID97_RS24045 -3.6 -3.5 type II toxin-antitoxin system prevent-host-death family antitoxin compare
ABID97_RS06575 -3.6 -4.3 trehalose-phosphatase compare
ABID97_RS13950 -3.5 -6.7 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABID97_RS06735 -3.3 -1.4 hypothetical protein compare
ABID97_RS27370 -3.0 -1.3 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
ABID97_RS07855 -2.8 -2.7 ABC transporter ATP-binding protein compare
ABID97_RS17265 -2.8 -3.2 two-component system response regulator OmpR compare
ABID97_RS04960 -2.5 -1.1 ATP-binding protein compare
ABID97_RS20615 -2.5 -5.9 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS13865 -2.4 -4.5 hypothetical protein compare
ABID97_RS23935 -2.4 -1.7 twin transmembrane helix small protein compare
ABID97_RS19375 -2.4 -2.9 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
ABID97_RS28000 -2.4 -1.1 NADPH-dependent FMN reductase compare
ABID97_RS02420 -2.4 -5.8 protealysin inhibitor emfourin compare
ABID97_RS16690 -2.2 -4.5 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS18925 -2.2 -3.0 IclR family transcriptional regulator compare
ABID97_RS07430 -2.2 -7.3 pantoate--beta-alanine ligase compare
ABID97_RS11290 -2.2 -0.9 DNA repair protein RadC compare
ABID97_RS15800 -2.1 -1.3 NAD(P)H-dependent oxidoreductase compare
ABID97_RS16290 -2.1 -6.1 protein-glutamate O-methyltransferase CheR compare
ABID97_RS17640 -2.1 -1.5 hydroxysqualene dehydroxylase HpnE compare
ABID97_RS19025 -2.1 -0.9 tripartite tricarboxylate transporter substrate binding protein compare
ABID97_RS26990 -2.1 -1.3 ornithine carbamoyltransferase compare
ABID97_RS16600 -2.1 -5.5 CysB family HTH-type transcriptional regulator compare
ABID97_RS16595 -2.1 -4.0 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS14115 -2.1 -2.8 dihydrolipoyl dehydrogenase compare
ABID97_RS09180 -2.1 -1.4 DNA polymerase I compare
ABID97_RS21150 -2.0 -7.7 FAD-dependent oxidoreductase compare
ABID97_RS02135 -2.0 -5.2 GspH/FimT family pseudopilin compare
ABID97_RS23220 -1.9 -1.1 glutamate synthase subunit beta compare
ABID97_RS25525 -1.9 -2.0 LacI family DNA-binding transcriptional regulator compare
ABID97_RS07850 -1.8 -4.8 ABC transporter ATP-binding protein compare
ABID97_RS17590 -1.8 -7.9 endopeptidase La compare
ABID97_RS10705 -1.7 -2.9 H-NS histone family protein compare
ABID97_RS00255 -1.7 -9.1 type IV pilus twitching motility protein PilT compare
ABID97_RS23425 -1.7 -1.2 tRNA-Pro compare
ABID97_RS24920 -1.7 -1.2 Holliday junction branch migration protein RuvA compare
ABID97_RS08860 -1.7 -2.3 SDR family NAD(P)-dependent oxidoreductase compare
ABID97_RS24705 -1.7 -4.5 response regulator compare
ABID97_RS14160 -1.7 -3.8 cell division protein ZapE compare
ABID97_RS25895 -1.7 -1.2 ABC transporter permease compare
ABID97_RS00540 -1.7 -6.3 HAMP domain-containing sensor histidine kinase compare
ABID97_RS02115 -1.7 -8.1 PilW family protein compare
ABID97_RS16315 -1.6 -3.2 hypothetical protein compare
ABID97_RS07840 -1.6 -5.1 branched-chain amino acid ABC transporter permease compare
ABID97_RS03805 -1.6 -1.0 ATP-binding protein compare
ABID97_RS20025 -1.6 -1.2 D-glycerate dehydrogenase compare
ABID97_RS23430 -1.6 -7.4 type IV-A pilus assembly ATPase PilB compare
ABID97_RS24170 -1.6 -3.0 ATP-binding protein compare
ABID97_RS02110 -1.6 -9.5 type IV pilus modification protein PilV compare
ABID97_RS23270 -1.5 -6.7 pilus assembly protein PilP compare
ABID97_RS08445 -1.5 -7.0 FimV/HubP family polar landmark protein compare
ABID97_RS07405 -1.5 -6.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS18445 -1.5 -1.1 helix-turn-helix transcriptional regulator compare
ABID97_RS07845 -1.5 -5.8 ABC transporter ATP-binding protein compare
ABID97_RS03915 -1.5 -4.5 DUF4124 domain-containing protein compare
ABID97_RS05250 -1.5 -3.5 anthranilate synthase component I compare
ABID97_RS23440 -1.4 -7.1 A24 family peptidase compare
ABID97_RS19380 -1.4 -1.7 2-methylcitrate synthase compare
ABID97_RS13450 -1.4 -1.5 TetR/AcrR family transcriptional regulator compare
ABID97_RS24025 -1.4 -1.1 SDR family NAD(P)-dependent oxidoreductase compare
ABID97_RS28270 -1.4 -1.5 thiolase compare
ABID97_RS19410 -1.4 -1.9 enoyl-CoA hydratase/isomerase family protein compare
ABID97_RS06175 -1.4 -8.3 STAS domain-containing protein compare
ABID97_RS20905 -1.4 -1.6 hypothetical protein compare
ABID97_RS26830 -1.4 -1.2 hypothetical protein compare
ABID97_RS06380 -1.4 -1.2 50S ribosomal protein L11 methyltransferase compare
ABID97_RS16535 -1.4 -3.7 arginine/lysine/ornithine decarboxylase compare
ABID97_RS19370 -1.4 -3.5 isocitrate lyase/PEP mutase family protein compare
ABID97_RS24510 -1.3 -0.8 cytidylate kinase family protein compare
ABID97_RS16985 -1.3 -1.8 transcriptional repressor LexA compare
ABID97_RS02455 -1.3 -2.8 nucleotidyltransferase family protein compare
ABID97_RS14265 -1.3 -3.7 protease modulator HflC compare
ABID97_RS10735 -1.3 -2.8 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
ABID97_RS15215 -1.3 -0.8 lysozyme compare
ABID97_RS02130 -1.3 -5.7 type IV pilin protein compare
ABID97_RS18940 -1.3 -1.1 Crp/Fnr family transcriptional regulator compare
ABID97_RS02140 -1.3 -4.3 sugar transferase compare
ABID97_RS14100 -1.3 -4.0 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABID97_RS02125 -1.3 -7.8 PilC/PilY family type IV pilus protein compare
ABID97_RS28220 -1.3 -1.1 SDR family oxidoreductase compare
ABID97_RS15380 -1.3 -6.2 nitrite/sulfite reductase compare
ABID97_RS02120 -1.2 -6.3 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS08510 -1.2 -6.1 GntR family transcriptional regulator compare
ABID97_RS07630 -1.2 -2.4 cytochrome o ubiquinol oxidase subunit III compare
ABID97_RS19930 -1.2 -0.9 DUF2160 domain-containing protein compare
ABID97_RS08200 -1.2 -4.1 LytTR family DNA-binding domain-containing protein compare
ABID97_RS03275 -1.2 -1.6 hypothetical protein compare
ABID97_RS14260 -1.2 -3.6 FtsH protease activity modulator HflK compare
ABID97_RS06160 -1.2 -3.5 GTP-binding protein compare
ABID97_RS02145 -1.2 -5.0 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS06415 -1.2 -5.2 sigma-54 dependent transcriptional regulator compare
ABID97_RS12140 -1.2 -4.4 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS13815 -1.2 -1.8 phage major capsid protein compare
ABID97_RS08195 -1.2 -3.7 histidine kinase compare
ABID97_RS07435 -1.2 -3.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS01825 -1.2 -7.0 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS26740 -1.2 -1.5 CoA transferase compare
ABID97_RS27255 -1.2 -1.3 LysR substrate-binding domain-containing protein compare
ABID97_RS08855 -1.2 -2.9 thiolase family protein compare
ABID97_RS23790 -1.2 -2.8 ATP-binding cassette domain-containing protein compare
ABID97_RS23435 -1.2 -6.5 type II secretion system F family protein compare
ABID97_RS14975 -1.2 -2.5 hypothetical protein compare
ABID97_RS08220 -1.2 -5.4 phosphoenolpyruvate carboxylase compare
ABID97_RS12725 -1.1 -2.6 pyrroloquinoline-quinone synthase PqqC compare
ABID97_RS11740 -1.1 -1.1 JAB domain-containing protein compare
ABID97_RS09935 -1.1 -4.1 hypothetical protein compare
ABID97_RS15240 -1.1 -2.7 phage terminase small subunit compare
ABID97_RS09670 -1.1 -1.4 hypothetical protein compare
ABID97_RS23380 -1.1 -6.3 lytic transglycosylase domain-containing protein compare
ABID97_RS16915 -1.1 -3.8 ATP-dependent Clp protease adapter ClpS compare
ABID97_RS05995 -1.1 -1.0 acyl-CoA dehydrogenase family protein compare
ABID97_RS28345 -1.1 -1.6 nuclear transport factor 2 family protein compare
ABID97_RS23360 -1.1 -0.7 hypothetical protein compare
ABID97_RS16770 -1.1 -1.1 hydroxymyristoyl-ACP dehydratase compare
ABID97_RS27010 -1.1 -1.4 DNA-binding domain-containing protein compare
ABID97_RS16295 -1.1 -1.8 chemotaxis protein CheB compare
ABID97_RS21165 -1.1 -1.7 energy-dependent translational throttle protein EttA compare
ABID97_RS02460 -1.1 -6.5 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS07380 -1.1 -2.0 S41 family peptidase compare
ABID97_RS26510 -1.1 -1.0 NUDIX hydrolase compare
ABID97_RS19030 -1.1 -1.1 tripartite tricarboxylate transporter substrate binding protein compare
ABID97_RS27450 -1.1 -0.7 biotin-independent malonate decarboxylase subunit gamma compare
ABID97_RS08710 -1.1 -2.6 polynucleotide adenylyltransferase PcnB compare
ABID97_RS25015 -1.1 -1.3 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS14625 -1.1 -2.6 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS18630 -1.1 -1.1 SDR family oxidoreductase compare
ABID97_RS25125 -1.1 -3.9 enoyl-CoA hydratase/isomerase family protein compare
ABID97_RS13570 -1.0 -2.5 IclR family transcriptional regulator compare
ABID97_RS02200 -1.0 -7.5 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABID97_RS16175 -1.0 -0.8 response regulator transcription factor compare
ABID97_RS24295 -1.0 -0.6 type II secretion system F family protein compare
ABID97_RS22060 -1.0 -0.6 MFS transporter compare
ABID97_RS15370 -1.0 -4.7 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS23655 -1.0 -2.7 YicC/YloC family endoribonuclease compare
ABID97_RS06095 -1.0 -5.7 MBL fold metallo-hydrolase compare
ABID97_RS25245 -1.0 -4.7 lysophospholipid acyltransferase family protein compare
ABID97_RS23780 -1.0 -2.8 ABC transporter permease compare
ABID97_RS15375 -1.0 -2.0 DUF934 domain-containing protein compare
ABID97_RS29170 -1.0 -0.8 alpha/beta hydrolase compare
ABID97_RS17970 -1.0 -3.5 protein TolQ compare
ABID97_RS23650 -1.0 -6.4 serine/threonine-protein kinase compare
ABID97_RS12180 -1.0 -0.7 hypothetical protein compare
ABID97_RS13735 -1.0 -1.3 hypothetical protein compare
ABID97_RS28450 -1.0 -2.5 helix-turn-helix transcriptional regulator compare
ABID97_RS16565 -1.0 -4.9 branched-chain amino acid ABC transporter substrate-binding protein compare
ABID97_RS09220 -1.0 -1.5 hypothetical protein compare
ABID97_RS19440 -1.0 -2.0 CoA transferase subunit A compare
ABID97_RS03730 -1.0 -1.3 5-carboxymethyl-2-hydroxymuconate Delta-isomerase compare
ABID97_RS11400 -1.0 -1.3 FAD-dependent oxidoreductase compare
ABID97_RS21395 -1.0 -2.1 methylated-DNA--[protein]-cysteine S-methyltransferase compare
ABID97_RS09525 -1.0 -2.2 DUF2059 domain-containing protein compare
ABID97_RS14540 -1.0 -1.0 transcriptional regulator compare
ABID97_RS02600 -1.0 -1.5 homoserine O-acetyltransferase compare
ABID97_RS19050 -1.0 -1.6 NAD-dependent succinate-semialdehyde dehydrogenase compare
ABID97_RS17250 -0.9 -4.5 3-hydroxybutyrate dehydrogenase compare
ABID97_RS29215 -0.9 -0.7 LysR family transcriptional regulator compare
ABID97_RS07355 -0.9 -4.1 CHASE3 domain-containing protein compare
ABID97_RS16695 -0.9 -6.0 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS14425 -0.9 -1.6 SDR family oxidoreductase compare
ABID97_RS08425 -0.9 -1.8 tryptophan synthase subunit alpha compare
ABID97_RS22705 -0.9 -4.9 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS22530 -0.9 -1.3 aldo/keto reductase compare
ABID97_RS14675 -0.9 -0.9 winged helix-turn-helix transcriptional regulator compare
ABID97_RS05275 -0.9 -0.6 anthranilate phosphoribosyltransferase compare
ABID97_RS09405 -0.9 -0.7 xanthine dehydrogenase family protein subunit M compare
ABID97_RS12575 -0.9 -0.7 ATP-grasp domain-containing protein compare
ABID97_RS08670 -0.9 -0.9 YciI family protein compare
ABID97_RS15360 -0.9 -2.7 GTP-binding protein compare
ABID97_RS23230 -0.9 -4.7 transposase compare
ABID97_RS01985 -0.9 -1.5 OmpA family protein compare
ABID97_RS11495 -0.9 -0.8 indoleacetamide hydrolase compare
ABID97_RS19645 -0.9 -2.0 glycine cleavage system aminomethyltransferase GcvT compare
ABID97_RS03680 -0.9 -2.8 lysophospholipid transporter LplT compare
ABID97_RS11265 -0.9 -1.8 LysR family transcriptional regulator compare
ABID97_RS10030 -0.9 -1.5 hypothetical protein compare
ABID97_RS23785 -0.9 -2.5 ABC transporter ATP-binding protein compare
ABID97_RS01840 -0.9 -4.3 DUF1631 family protein compare
ABID97_RS04505 -0.9 -0.8 ferric iron uptake transcriptional regulator compare
ABID97_RS03965 -0.9 -1.3 DUF2783 domain-containing protein compare
ABID97_RS25085 -0.9 -1.2 2-hydroxychromene-2-carboxylate isomerase compare
ABID97_RS00930 -0.9 -2.0 organic hydroperoxide resistance protein compare
ABID97_RS15190 -0.9 -1.1 phage baseplate assembly protein V compare
ABID97_RS27265 -0.9 -0.9 fumarylacetoacetate hydrolase family protein compare
ABID97_RS25275 -0.9 -4.3 metallophosphoesterase compare
ABID97_RS02210 -0.9 -4.2 pilin compare
ABID97_RS01755 -0.9 -4.1 pyruvate kinase compare
ABID97_RS27770 -0.9 -2.5 glutathione S-transferase family protein compare
ABID97_RS20770 -0.9 -2.3 sulfatase-like hydrolase/transferase compare
ABID97_RS17850 -0.8 -0.5 tetratricopeptide repeat protein compare
ABID97_RS10710 -0.8 -3.4 NADPH:quinone oxidoreductase family protein compare
ABID97_RS05570 -0.8 -1.7 LysR family transcriptional regulator compare
ABID97_RS29185 -0.8 -1.8 TetR/AcrR family transcriptional regulator compare
ABID97_RS02770 -0.8 -1.0 exosortase Q compare
ABID97_RS28725 -0.8 -1.5 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Sodium propionate in Variovorax sp. OAS795

For carbon source Sodium propionate across organisms