Experiment set1IT068 for Serratia liquefaciens MT49

Compare to:

No stress control, anaerobic

200 most important genes:

  gene name fitness t score description  
IAI46_11400 -4.6 -2.4 DUF3811 domain-containing protein compare
IAI46_02135 -2.8 -14.3 anaerobic ribonucleoside-triphosphate reductase compare
IAI46_24645 -2.7 -7.6 6-phosphofructokinase compare
IAI46_23690 -2.7 -1.9 adenine-specific DNA-methyltransferase compare
IAI46_24945 -2.6 -1.8 ribosome-dependent GTPase TypA compare
IAI46_18770 -2.6 -5.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI46_13260 -2.6 -2.8 FNR family transcription factor compare
IAI46_24770 -2.5 -4.4 polysaccharide deacetylase family protein compare
IAI46_24750 -2.4 -3.6 glycosyltransferase compare
IAI46_23090 -2.3 -12.7 glucose-6-phosphate isomerase compare
IAI46_24755 -2.3 -8.5 O-antigen ligase family protein compare
IAI46_20455 -2.3 -2.6 RNA pyrophosphohydrolase compare
IAI46_17810 -2.2 -8.4 amidophosphoribosyltransferase compare
IAI46_18885 -2.2 -4.9 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI46_01365 -2.1 -11.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI46_11265 -2.1 -3.1 ribonuclease T compare
IAI46_25250 -2.1 -4.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI46_02130 -2.0 -5.9 anaerobic ribonucleoside-triphosphate reductase-activating protein compare
IAI46_19475 -1.9 -11.8 phosphoribosylformylglycinamidine synthase compare
IAI46_24985 -1.9 -6.7 DNA polymerase I compare
IAI46_25110 -1.8 -4.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI46_01360 -1.8 -9.0 phosphoribosylamine--glycine ligase compare
IAI46_15900 -1.8 -2.1 flagellar type III secretion system protein FliR compare
IAI46_07125 -1.8 -1.5 SDR family oxidoreductase compare
IAI46_18460 -1.7 -4.9 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI46_00735 -1.7 -7.7 DNA helicase II compare
IAI46_08130 -1.7 -2.1 ABC transporter ATP-binding protein compare
IAI46_24760 -1.7 -4.6 glycosyltransferase compare
IAI46_03840 -1.7 -3.6 recombinase RecA compare
IAI46_24665 -1.6 -4.7 envelope stress sensor histidine kinase CpxA compare
IAI46_11080 -1.6 -3.2 ABC transporter substrate-binding protein compare
IAI46_20670 -1.6 -1.7 Hpt domain-containing protein compare
IAI46_17145 -1.5 -2.3 DNA polymerase II compare
IAI46_03600 -1.5 -10.5 GTP diphosphokinase compare
IAI46_05745 -1.5 -1.6 gamma-glutamylcyclotransferase compare
IAI46_06015 -1.5 -2.7 PhoH family protein compare
IAI46_16945 -1.4 -2.3 DNA oxidative demethylase AlkB compare
IAI46_20760 -1.4 -2.1 FAD assembly factor SdhE compare
IAI46_17750 -1.4 -3.9 acetate kinase compare
IAI46_13915 -1.4 -3.0 orotidine-5'-phosphate decarboxylase compare
IAI46_13935 -1.4 -1.7 LapA family protein compare
IAI46_15990 -1.4 -1.9 flagellar protein FlhE compare
IAI46_17755 -1.4 -3.1 phosphate acetyltransferase compare
IAI46_12830 -1.4 -1.8 Gfo/Idh/MocA family oxidoreductase compare
IAI46_05375 -1.4 -1.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI46_05350 -1.4 -1.7 ABC transporter ATP-binding protein compare
IAI46_20730 -1.3 -2.1 site-specific tyrosine recombinase XerD compare
IAI46_11195 -1.3 -1.4 tRNA-Val compare
IAI46_15780 -1.3 -4.0 flagella biosynthesis regulatory protein FliZ compare
IAI46_10285 -1.3 -1.3 peptide chain release factor N(5)-glutamine methyltransferase compare
IAI46_20900 -1.3 -6.2 phosphoglycerate dehydrogenase compare
IAI46_05720 -1.3 -2.7 DoxX family protein compare
IAI46_17365 -1.3 -1.2 YejL family protein compare
IAI46_09505 -1.2 -1.2 hypothetical protein compare
IAI46_18665 -1.2 -3.4 chaperone NapD compare
IAI46_01620 -1.2 -2.3 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI46_21210 -1.2 -4.8 RNA polymerase-binding protein DksA compare
IAI46_07865 -1.2 -2.7 hypothetical protein compare
IAI46_06275 -1.2 -1.6 2-oxoglutarate dehydrogenase E1 component compare
IAI46_00640 -1.2 -3.5 ECA oligosaccharide polymerase compare
IAI46_08635 -1.2 -3.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI46_12995 -1.1 -2.3 hypothetical protein compare
IAI46_13920 -1.1 -2.2 DUF1471 domain-containing protein compare
IAI46_08610 -1.1 -6.7 formate C-acetyltransferase compare
IAI46_19600 -1.1 -4.1 ATP-dependent RNA helicase SrmB compare
IAI46_06585 -1.1 -3.0 molybdopterin synthase catalytic subunit MoaE compare
IAI46_00915 -1.1 -2.6 DUF1145 family protein compare
IAI46_14060 -1.1 -2.0 YkgJ family cysteine cluster protein compare
IAI46_18340 -1.1 -1.3 Fe(3+)-siderophore ABC transporter permease compare
IAI46_05025 -1.1 -2.6 DNA-binding protein HU-beta compare
IAI46_00725 -1.1 -1.7 tyrosine recombinase XerC compare
IAI46_08640 -1.1 -4.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
IAI46_10660 -1.1 -1.2 TetR/AcrR family transcriptional regulator compare
IAI46_23240 -1.1 -3.4 shikimate dehydrogenase compare
IAI46_07830 -1.0 -5.7 molybdopterin molybdotransferase MoeA compare
IAI46_14555 -1.0 -1.5 RidA family protein compare
IAI46_11930 -1.0 -1.2 AprI/Inh family metalloprotease inhibitor compare
IAI46_21470 -1.0 -2.6 oxidative damage protection protein compare
IAI46_25195 -1.0 -1.3 phosphate signaling complex protein PhoU compare
IAI46_16435 -1.0 -1.5 RidA family protein compare
IAI46_01955 -1.0 -5.0 polyribonucleotide nucleotidyltransferase compare
IAI46_25010 -1.0 -5.1 molybdenum cofactor guanylyltransferase MobA compare
IAI46_22410 -1.0 -2.1 lipid asymmetry maintenance protein MlaB compare
IAI46_20215 -1.0 -1.6 molecular chaperone Skp compare
IAI46_15515 -1.0 -3.6 nitrate reductase molybdenum cofactor assembly chaperone compare
IAI46_08605 -1.0 -3.6 pyruvate formate lyase 1-activating protein compare
IAI46_12500 -1.0 -1.9 hydrogenase maturation peptidase HycI compare
IAI46_15290 -1.0 -1.5 hypothetical protein compare
IAI46_02940 -0.9 -4.5 phosphoserine phosphatase compare
IAI46_12805 -0.9 -1.3 protocatechuate 3,4-dioxygenase subunit alpha compare
IAI46_12800 -0.9 -2.0 protocatechuate 3,4-dioxygenase subunit beta compare
IAI46_09100 -0.9 -1.6 enoyl-CoA hydratase/isomerase family protein compare
IAI46_17640 -0.9 -1.7 type II toxin-antitoxin system RelE/ParE family toxin compare
IAI46_06505 -0.9 -1.8 6-phosphogluconolactonase compare
IAI46_11485 -0.9 -1.7 electron transport complex subunit RsxB compare
IAI46_06565 -0.9 -2.2 GTP 3',8-cyclase MoaA compare
IAI46_14755 -0.9 -2.0 ASCH domain-containing protein compare
IAI46_10145 -0.9 -1.5 hypothetical protein compare
IAI46_08805 -0.9 -2.8 quinone-dependent dihydroorotate dehydrogenase compare
IAI46_24690 -0.9 -4.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
IAI46_12205 -0.9 -1.5 3-hydroxyacyl-ACP dehydratase FabZ compare
IAI46_01815 -0.9 -2.3 transcriptional regulator ArgR compare
IAI46_12675 -0.9 -2.2 PAS domain-containing protein compare
IAI46_02410 -0.9 -2.1 hypothetical protein compare
IAI46_01880 -0.9 -2.4 transcription elongation factor GreA compare
IAI46_18670 -0.9 -1.1 ferredoxin-type protein NapF compare
IAI46_11020 -0.9 -2.7 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
IAI46_13505 -0.9 -1.6 phage shock protein operon transcriptional activator compare
IAI46_12240 -0.9 -1.8 Gfo/Idh/MocA family oxidoreductase compare
IAI46_18915 -0.9 -5.0 polyphosphate kinase 1 compare
IAI46_12455 -0.8 -1.7 FCD domain-containing protein compare
IAI46_18025 -0.8 -3.2 chorismate synthase compare
IAI46_17845 -0.8 -2.0 aspartate-semialdehyde dehydrogenase compare
IAI46_11185 -0.8 -1.4 pyruvate kinase PykF compare
IAI46_12610 -0.8 -1.8 alpha/beta hydrolase compare
IAI46_01960 -0.8 -5.2 lipoprotein NlpI compare
IAI46_24785 -0.8 -1.4 glycosyltransferase compare
IAI46_20355 -0.8 -3.2 cysteine desulfurase sulfur acceptor subunit CsdE compare
IAI46_09755 -0.8 -2.4 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
IAI46_03195 -0.8 -6.4 carbamoyl-phosphate synthase large subunit compare
IAI46_17665 -0.8 -1.2 NADH-quinone oxidoreductase subunit NuoK compare
IAI46_24705 -0.8 -1.5 rhodanese-like domain-containing protein compare
IAI46_19265 -0.8 -1.7 YfgM family protein compare
IAI46_05405 -0.8 -2.7 hypothetical protein compare
IAI46_01350 -0.8 -3.3 DNA-binding protein HU-alpha compare
IAI46_13680 -0.8 -2.7 hypothetical protein compare
IAI46_12350 -0.8 -2.6 zinc-binding dehydrogenase compare
IAI46_02440 -0.8 -1.7 hypothetical protein compare
IAI46_11785 -0.8 -1.7 xanthine dehydrogenase small subunit compare
IAI46_09970 -0.8 -2.7 DUF533 domain-containing protein compare
IAI46_07070 -0.8 -1.7 TetR/AcrR family transcriptional regulator compare
IAI46_11690 -0.8 -1.8 ATP-dependent dethiobiotin synthetase BioD compare
IAI46_08530 -0.8 -1.6 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI46_02120 -0.8 -1.6 type II toxin-antitoxin system RelB/DinJ family antitoxin compare
IAI46_19655 -0.8 -2.4 SsrA-binding protein SmpB compare
IAI46_03985 -0.8 -3.7 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI46_18120 -0.7 -2.6 tRNA-Arg compare
IAI46_25260 -0.7 -1.7 membrane protein insertion efficiency factor YidD compare
IAI46_17415 -0.7 -1.1 nuclear transport factor 2 family protein compare
IAI46_05780 -0.7 -3.2 fumarylacetoacetate hydrolase family protein compare
IAI46_12270 -0.7 -1.5 ABC transporter substrate-binding protein compare
IAI46_24700 -0.7 -1.8 glutaredoxin 3 compare
IAI46_19570 -0.7 -2.1 SoxR-reducing system protein RseC compare
IAI46_22335 -0.7 -4.9 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI46_12510 -0.7 -1.8 NADH-quinone oxidoreductase subunit B family protein compare
IAI46_23505 -0.7 -2.4 peptidylprolyl isomerase compare
IAI46_06570 -0.7 -1.8 molybdenum cofactor biosynthesis protein B compare
IAI46_01745 -0.7 -1.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI46_10730 -0.7 -1.8 hypothetical protein compare
IAI46_24845 -0.7 -4.5 orotate phosphoribosyltransferase compare
IAI46_24695 -0.7 -2.8 protein-export chaperone SecB compare
IAI46_18005 -0.7 -1.4 YfcL family protein compare
IAI46_03190 -0.7 -3.8 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI46_11100 -0.7 -1.8 glutathione peroxidase compare
IAI46_07710 -0.7 -1.6 transcriptional regulator BetI compare
IAI46_11800 -0.7 -3.1 peptidyl-dipeptidase Dcp compare
IAI46_07290 -0.7 -1.4 NUDIX hydrolase compare
IAI46_14610 -0.7 -1.1 zinc ABC transporter ATP-binding protein ZnuC compare
IAI46_08025 -0.7 -2.5 acylneuraminate cytidylyltransferase family protein compare
IAI46_10775 -0.7 -2.3 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF compare
IAI46_14370 -0.7 -1.4 hypothetical protein compare
IAI46_14915 -0.7 -1.3 DUF1304 domain-containing protein compare
IAI46_11260 -0.7 -1.0 Grx4 family monothiol glutaredoxin compare
IAI46_24970 -0.7 -5.4 oxygen-independent coproporphyrinogen III oxidase compare
IAI46_09570 -0.7 -0.7 hypothetical protein compare
IAI46_11900 -0.7 -1.7 PTS glucose transporter subunit IIA compare
IAI46_12985 -0.7 -1.8 GNAT family N-acetyltransferase compare
IAI46_17540 -0.7 -2.3 o-succinylbenzoate--CoA ligase compare
IAI46_02275 -0.7 -3.3 aspartate carbamoyltransferase compare
IAI46_17575 -0.7 -2.5 stress response protein ElaB compare
IAI46_18750 -0.7 -1.4 YpfN family protein compare
IAI46_15685 -0.7 -1.2 siderophore-interacting protein compare
IAI46_08390 -0.7 -1.6 YbjO family protein compare
IAI46_15510 -0.7 -1.5 respiratory nitrate reductase subunit gamma compare
IAI46_10795 -0.7 -1.8 RNA chaperone ProQ compare
IAI46_14835 -0.7 -2.0 23S rRNA (guanine(745)-N(1))-methyltransferase compare
IAI46_13265 -0.7 -2.6 universal stress protein UspE compare
IAI46_13460 -0.7 -1.5 L-Ala-D/L-Glu epimerase compare
IAI46_22760 -0.7 -2.6 YhdT family protein compare
IAI46_06145 -0.6 -2.4 alpha-D-glucose phosphate-specific phosphoglucomutase compare
IAI46_09740 -0.6 -2.3 dihydroorotase compare
IAI46_21330 -0.6 -3.1 pyruvate dehydrogenase complex transcriptional repressor PdhR compare
IAI46_18040 -0.6 -1.7 phosphohistidine phosphatase SixA compare
IAI46_09850 -0.6 -1.4 hypothetical protein compare
IAI46_12005 -0.6 -1.1 hypothetical protein compare
IAI46_19260 -0.6 -2.1 outer membrane protein assembly factor BamB compare
IAI46_11630 -0.6 -1.3 LysR family transcriptional regulator compare
IAI46_17270 -0.6 -3.9 tryptophan permease compare
IAI46_02875 -0.6 -2.8 peptide chain release factor 3 compare
IAI46_07950 -0.6 -2.1 CidA/LrgA family protein compare
IAI46_03300 -0.6 -3.0 ilvB operon leader peptide IvbL compare
IAI46_17140 -0.6 -1.8 hypothetical protein compare
IAI46_11910 -0.6 -1.9 PRD domain-containing protein compare
IAI46_14320 -0.6 -1.7 NAD(P)H nitroreductase compare
IAI46_14095 -0.6 -2.3 nucleoside hydrolase compare
IAI46_22305 -0.6 -3.4 YraN family protein compare
IAI46_15130 -0.6 -1.4 hypothetical protein compare
IAI46_11340 -0.6 -1.4 transcriptional regulator SlyA compare
IAI46_07745 -0.6 -1.8 molecular chaperone compare
IAI46_16805 -0.6 -1.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Serratia liquefaciens MT49 in no stress control experiments

For no stress control Sodium nitrate across organisms