Experiment set1IT068 for Caulobacter crescentus NA1000 Δfur

Compare to:

PYE with CHIR-090 4 ug/mL

200 most important genes:

  gene name fitness t score description  
CCNA_03927 -4.4 -2.7 hypothetical protein compare
CCNA_03783 -4.2 -2.7 cytochrome c biogenesis ABC transporter permease component CcmB compare
CCNA_03337 -4.0 -2.8 peptidoglycan-associated lipoprotein pal compare
CCNA_01496 -3.5 -2.3 2-dehydro-3-deoxyphosphooctonate aldolase compare
CCNA_03859 -3.4 -2.4 two-component response regulator cenR compare
CCNA_01212 -3.4 -13.9 dATP pyrophosphohydrolase compare
CCNA_01211 -3.3 -5.5 MobA-like NTP transferase domain protein compare
CCNA_03072 -3.3 -2.3 TetR-family transcriptional regulator compare
CCNA_01222 -3.3 -11.6 NADH-ubiquinone oxidoreductase compare
CCNA_01218 -3.2 -10.7 sphingosine kinase/diacylglycerol kinase-related protein compare
CCNA_03790 -3.2 -3.7 hypothetical protein compare
CCNA_01217 -3.1 -16.0 phosphatidylglycerophosphate synthase compare
CCNA_01279 -2.9 -2.8 inorganic polyphosphate/ATP-NAD kinase compare
CCNA_01223 -2.9 -17.3 acyl-CoA synthetase compare
CCNA_02085 -2.9 -3.4 anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase compare
CCNA_03336 -2.9 -6.1 Tol system periplasmic component YbgF compare
CCNA_01213 -2.9 -5.8 YjgP/YjgQ family membrane permease compare
CCNA_01220 -2.8 -11.0 7-keto-8-aminopelargonate synthetase compare
CCNA_00976 -2.8 -1.9 signal peptide peptidase A compare
CCNA_02650 -2.7 -3.6 N-acetyl-anhydromuramyl-L-alanine amidase compare
CCNA_00293 -2.6 -3.2 phosphate transport system permease protein pstA compare
CCNA_01538 -2.6 -1.8 pyruvate phosphate dikinase compare
CCNA_01224 -2.6 -9.1 O-antigen membrane transport protein compare
CCNA_01676 -2.6 -1.8 hypothetical protein compare
CCNA_03755 -2.6 -7.0 bifunctional D-glycero-D-manno-heptose-7-phosphate 1-kinase/D-glycero-D-manno-heptose-1-phosphate adenylyltransferase compare
CCNA_02329 -2.5 -1.7 exodeoxyribonuclease VII large subunit compare
CCNA_03650 -2.4 -2.3 mannose-1-phosphate guanyltransferase compare
CCNA_02344 -2.4 -2.3 phosphoglycerate mutase compare
CCNA_01221 -2.3 -3.5 acyl carrier protein compare
CCNA_01795 -2.3 -3.1 phosphopyruvate hydratase compare
CCNA_01988 -2.2 -2.1 UDP-N-acetylglucosamine O-acyltransferase LpxA compare
CCNA_02818 -2.2 -1.7 hypothetical protein compare
CCNA_02278 -2.2 -1.2 hypothetical protein compare
CCNA_01130 -2.2 -3.9 flagellar biosynthesis protein FliR compare
CCNA_01817 -2.2 -5.7 nitrogen assimilation regulatory protein ntrX compare
CCNA_01210 -2.1 -7.1 nucleotidyltransferase family protein compare
CCNA_02094 -2.1 -3.2 MviM-like NAD-dependent oxidoreductase compare
CCNA_01214 -2.1 -3.7 YjgP/YjgQ family membrane permease compare
CCNA_00304 -2.1 -3.7 3-deoxy-D-manno-octulosonic-acid transferase compare
CCNA_00708 -2.1 -2.5 cobaltochelatase cobT subunit compare
CCNA_03277 -2.1 -4.6 glycosyltransferase compare
CCNA_01118 -2.1 -1.9 hypothetical protein compare
CCNA_00128 -2.0 -2.4 argininosuccinate synthase compare
CCNA_01964 -2.0 -1.5 NADH dehydrogenase compare
CCNA_03548 -2.0 -6.5 carboxy-terminal processing protease precursor compare
CCNA_03052 -2.0 -4.6 acyltransferase compare
CCNA_02962 -2.0 -1.3 HicB-family RNAse H fold protein compare
CCNA_00306 -1.9 -5.1 lysophospholipid acyltransferase compare
CCNA_00217 -1.8 -1.6 thiol:disulfide interchange protein DsbD compare
CCNA_01060 -1.8 -2.9 type I protein secretion ATP-binding protein RsaD compare
CCNA_02664 -1.8 -1.4 flagellar assembly regulator FliX compare
CCNA_02387 -1.8 -1.6 glutathione reductase compare
CCNA_00893 -1.7 -2.9 helix-turn-helix DNA-binding protein compare
CCNA_00134 -1.7 -5.6 surface protein compare
CCNA_01732 -1.7 -2.4 DNA repair protein RadA compare
CCNA_03704 -1.7 -1.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
CCNA_03786 -1.7 -3.5 heme chaperone heme-lyase compare
CCNA_01802 -1.7 -0.9 hypothetical protein compare
CCNA_02320 -1.7 -4.6 2'-deoxycytidine 5'-triphosphate deaminase compare
CCNA_01103 -1.6 -5.1 ADP-heptose--LPS heptosyltransferase compare
CCNA_01129 -1.6 -2.4 flagellar biosynthesis protein FliQ compare
CCNA_03358 -1.6 -2.6 glyceraldehyde 3-phosphate dehydrogenase compare
CCNA_01219 -1.6 -4.4 putative cytosolic protein compare
CCNA_01971 -1.6 -2.3 peptidyl-prolyl cis-trans isomerase compare
CCNA_01556 -1.6 -2.3 LacI-family transcriptional regulator compare
CCNA_03782 -1.5 -1.8 cytochrome c biogenesis ATP-binding export protein CcmA compare
CCNA_00952 -1.5 -4.2 flagellar assembly protein FlbE/FliH compare
CCNA_01910 -1.5 -4.8 ABC transporter substrate-binding protein compare
CCNA_02075 -1.5 -5.2 peptidoglycan binding endopeptidase DipM compare
CCNA_00057 -1.5 -1.3 glycoprotease family protein compare
CCNA_00135 -1.5 -5.2 trypsin-like peptidase compare
CCNA_03835 -1.5 -2.6 3-oxoacyl-(acyl-carrier-protein) synthase compare
CCNA_03878 -1.5 -2.7 ferrochelatase compare
CCNA_00252 -1.5 -7.3 multimodular transpeptidase-transglycosylase PbpX compare
CCNA_00294 -1.5 -2.1 phosphate transport ATP-binding protein pstB compare
CCNA_00956 -1.4 -5.2 flagellar biosynthesis protein FlhA compare
CCNA_00273 -1.4 -0.9 peptide deformylase compare
CCNA_01955 -1.4 -6.4 zinc metalloprotease compare
CCNA_02704 -1.4 -2.9 NADP-dependent malic enzyme compare
CCNA_01226 -1.4 -7.0 hypothetical protein compare
CCNA_02645 -1.4 -2.0 S-adenosyl-methyltransferase MraW compare
CCNA_00379 -1.3 -1.5 thiol:disulfide interchange protein dsbA compare
CCNA_03683 -1.3 -2.2 maleylpyruvate isomerase compare
CCNA_03516 -1.3 -2.2 protoheme IX farnesyltransferase coxE compare
CCNA_00953 -1.3 -1.9 flagellar motor switch protein FliN compare
CCNA_00257 -1.3 -6.0 adenosylhomocysteinase compare
CCNA_02941 -1.3 -1.3 transcription elongation factor greA compare
CCNA_03577 -1.3 -1.2 DNA polymerase I compare
CCNA_01896 -1.3 -1.0 hypothetical protein compare
CCNA_03910 -1.3 -1.7 hypothetical protein compare
CCNA_00667 -1.3 -5.4 lipopolysaccharide biosynthesis protein compare
CCNA_01638 -1.3 -6.2 beta-lactamase family protein compare
CCNA_01784 -1.3 -1.4 hypothetical protein compare
CCNA_01061 -1.3 -3.2 type I secretion adaptor protein RsaE compare
CCNA_03135 -1.3 -4.7 flagellum-specific ATP synthase fliL compare
CCNA_00512 -1.2 -4.5 GTP-binding protein, probable translation factor compare
CCNA_00240 -1.2 -1.8 PTS system, IIA component compare
CCNA_02062 -1.2 -3.4 DNA repair protein recN compare
CCNA_03013 -1.2 -4.7 alkyl hydroperoxide reductase subunit F compare
CCNA_03101 -1.2 -2.8 site-specific tyrosine recombinase XerD compare
CCNA_03651 -1.2 -2.4 ATP-dependent nuclease subunit B compare
CCNA_03960 -1.2 -1.0 hypothetical protein compare
CCNA_03871 -1.2 -1.8 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
CCNA_00011 -1.2 -3.4 chaperone protein DnaJ compare
CCNA_03732 -1.2 -3.3 N-acyl-D-glucosamine 2-epimerase compare
CCNA_02848 -1.2 -3.5 heme chaperone-apocytochrome heme-lyase compare
CCNA_01430 -1.2 -2.2 hypothetical protein compare
CCNA_03942 -1.1 -2.4 hypothetical protein compare
CCNA_03787 -1.1 -1.4 heme exporter protein D CcmD compare
CCNA_02390 -1.1 -2.1 phosphoglycolate phosphatase compare
CCNA_02346 -1.1 -3.2 arabinose-5-phosphate isomerase compare
CCNA_01844 -1.1 -4.0 DNA integration/recombination/inversion protein compare
CCNA_00502 -1.1 -3.9 glycosyl transferase family protein compare
CCNA_03114 -1.1 -3.1 hypothetical protein compare
CCNA_01805 -1.1 -1.4 dihydrolipoamide dehydrogenase compare
CCNA_00001 -1.1 -5.1 ATP/GTP-binding protein compare
CCNA_02140 -1.1 -3.3 flagellar motor switch protein fliM compare
CCNA_01474 -1.1 -3.6 cytochrome cbb3 oxidase maturation protein ccoS compare
CCNA_R0047 -1.0 -1.7 tRNA-Val compare
CCNA_03609 -1.0 -4.7 outer membrane protein compare
CCNA_03705 -1.0 -1.6 hypothetical protein compare
CCNA_03861 -1.0 -3.2 pyridoxal 5'-phosphate dependent enzyme class III compare
CCNA_02449 -1.0 -4.0 hypothetical protein compare
CCNA_00349 -1.0 -1.3 integrase/recombinase, XerC-CodV family compare
CCNA_03026 -1.0 -3.2 two-component response regulator petR compare
CCNA_01939 -1.0 -1.6 ADP-ribosylglycohydrolase compare
CCNA_02333 -1.0 -1.7 lipid A biosynthesis lauroyl acyltransferase compare
CCNA_03354 -1.0 -3.7 5-formyltetrahydrofolate cyclo-ligase compare
CCNA_01407 -0.9 -2.1 hypothetical protein compare
CCNA_02599 -0.9 -1.6 antitoxin protein relB-2 compare
CCNA_01120 -0.9 -2.1 hypothetical protein compare
CCNA_00950 -0.9 -4.6 flagellar M-ring protein FliF compare
CCNA_02468 -0.9 -2.3 hypothetical protein compare
CCNA_00296 -0.9 -4.3 phosphate regulon response regulator PhoB compare
CCNA_01883 -0.9 -4.6 acyl-CoA dehydrogenase compare
CCNA_01968 -0.9 -1.0 pentapeptide repeats containing protein compare
CCNA_01837 -0.9 -3.8 transposase, IS30 family compare
CCNA_02847 -0.9 -2.4 cytochrome c-type biogenesis protein ccmH compare
CCNA_01692 -0.9 -1.6 GMP synthase GuaA compare
CCNA_01467 -0.9 -5.9 cytochrome cbb3 oxidase subunit I ccoN compare
CCNA_03273 -0.9 -5.8 hypothetical protein compare
CCNA_02487 -0.9 -4.9 4-hydroxybenzoate 3-monooxygenase compare
CCNA_02934 -0.9 -3.9 hypothetical protein compare
CCNA_01085 -0.9 -2.2 DNA-cytosine methyltransferase compare
CCNA_01131 -0.9 -3.4 flagellar biosynthesis protein FlhB compare
CCNA_01275 -0.9 -1.3 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase compare
CCNA_03201 -0.9 -6.2 adenylosuccinate synthetase compare
CCNA_01889 -0.9 -4.8 long-chain-fatty-acid--CoA ligase compare
CCNA_03916 -0.9 -1.4 hypothetical protein compare
CCNA_01367 -0.8 -2.8 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
CCNA_03652 -0.8 -2.7 ATP-dependent nuclease subunit A compare
CCNA_02644 -0.8 -1.1 cell division protein FtsL compare
CCNA_02521 -0.8 -0.8 endonuclease involved in recombination compare
CCNA_00641 -0.8 -2.1 hypothetical protein compare
CCNA_00063 -0.8 -0.7 MviN-family integral membrane protein compare
CCNA_02250 -0.8 -4.9 methylcrotonyl-CoA carboxylase biotin-containing subunit compare
CCNA_01551 -0.8 -1.4 hypothetical protein compare
CCNA_03980 -0.8 -2.2 hypothetical protein compare
CCNA_01552 -0.8 -3.1 polar localization protein TipN compare
CCNA_01270 -0.8 -0.9 hypothetical protein compare
CCNA_02552 -0.8 -0.8 ATP-dependent Clp protease adaptor protein ClpS compare
CCNA_02481 -0.8 -6.0 TonB-dependent receptor compare
CCNA_03329 -0.8 -0.7 hypothetical protein compare
CCNA_02778 -0.8 -2.6 hypothetical protein compare
CCNA_02488 -0.8 -3.5 acetate/3-ketoacid CoA transferase, subunit A compare
CCNA_01461 -0.8 -4.1 hypothetical protein compare
CCNA_00951 -0.8 -1.9 flagellar motor switch protein FliG compare
CCNA_02565 -0.8 -3.5 hypothetical protein compare
CCNA_01469 -0.8 -2.2 cytochrome cbb3 oxidase, subunit ccoQ compare
CCNA_00573 -0.7 -5.9 TonB-dependent receptor compare
CCNA_R0010 -0.7 -3.1 tRNA-Arg compare
CCNA_02479 -0.7 -4.3 aryl-alcohol dehydrogenase compare
CCNA_00747 -0.7 -2.6 cyclic-di-GMP phosphodiesterase, flagellum assembly factor TipF compare
CCNA_02138 -0.7 -1.8 hypothetical protein compare
CCNA_01675 -0.7 -0.9 outer membrane protein compare
CCNA_03399 -0.7 -2.6 3-polyprenyl-4-hydroxybenzoate decarboxylase compare
CCNA_02892 -0.7 -0.8 hypothetical protein compare
CCNA_02572 -0.7 -2.5 adenylosuccinate lyase compare
CCNA_00543 -0.7 -3.1 methyl-accepting chemotaxis protein compare
CCNA_02232 -0.7 -5.2 TonB-dependent receptor compare
CCNA_03988 -0.7 -1.0 hypothetical protein compare
CCNA_02655 -0.7 -3.3 NTF2 superfamily protein compare
CCNA_01677 -0.7 -1.9 carboxypeptidase G2 precursor compare
CCNA_03649 -0.7 -3.2 Ser/Thr kinase-related phosphotransferase compare
CCNA_01868 -0.7 -3.7 2H phosphodiesterase family protein compare
CCNA_00292 -0.7 -1.4 phosphate transport system permease protein pstC compare
CCNA_01047 -0.7 -5.4 TonB-dependent receptor compare
CCNA_03542 -0.7 -1.8 hypothetical protein compare
CCNA_02925 -0.7 -1.9 carbamoyl-phosphate synthase small chain compare
CCNA_01003 -0.7 -2.2 flagellar biosynthesis protein FliO compare
CCNA_02830 -0.7 -1.8 MPN domain protein compare
CCNA_00197 -0.7 -0.9 LSU ribosomal protein L19P compare
CCNA_02252 -0.7 -3.4 methylcrotonyl-CoA carboxylase carboxyl transferase subunit compare
CCNA_00670 -0.7 -1.9 ABC-type polysaccharide/polyol phosphate transport system, ATPase component compare
CCNA_01609 -0.7 -4.6 alkyl sulfatase compare
CCNA_01879 -0.7 -2.9 NADH:flavin oxidoreductases, old yellow enzyme family compare
CCNA_02497 -0.7 -4.8 hypothetical protein compare
CCNA_01523 -0.7 -3.7 acetyltransferase flmH compare
CCNA_01757 -0.7 -1.2 dimethyladenosine transferase compare
CCNA_01171 -0.6 -3.1 histidine phosphotransferase ShpA compare


Specific Phenotypes

None in this experiment

For Caulobacter crescentus NA1000 Δfur in stress experiments

For stress CHIR-090 across organisms