Experiment set1IT067 for Variovorax sp. OAS795

Compare to:

Sodium succinate dibasic hexahydrate carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS16600 -6.9 -6.7 CysB family HTH-type transcriptional regulator compare
ABID97_RS15380 -6.6 -14.1 nitrite/sulfite reductase compare
ABID97_RS06575 -6.4 -6.2 trehalose-phosphatase compare
ABID97_RS23225 -6.3 -15.7 glutamate synthase-related protein compare
ABID97_RS16595 -6.1 -5.0 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS20615 -6.1 -8.9 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS01565 -5.4 -12.1 DNA starvation/stationary phase protection protein compare
ABID97_RS10885 -5.1 -5.0 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS07405 -5.1 -10.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS08425 -5.0 -3.5 tryptophan synthase subunit alpha compare
ABID97_RS05260 -4.9 -2.0 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS05250 -4.7 -7.8 anthranilate synthase component I compare
ABID97_RS15375 -4.5 -5.3 DUF934 domain-containing protein compare
ABID97_RS15365 -4.5 -7.3 sulfate adenylyltransferase subunit CysD compare
ABID97_RS23425 -4.5 -3.1 tRNA-Pro compare
ABID97_RS23230 -4.4 -15.0 transposase compare
ABID97_RS25015 -4.3 -3.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS15370 -4.2 -13.0 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS07775 -4.2 -5.6 phosphoribosylglycinamide formyltransferase compare
ABID97_RS14160 -4.1 -8.4 cell division protein ZapE compare
ABID97_RS06345 -4.1 -2.8 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS23915 -4.1 -4.0 heme o synthase compare
ABID97_RS07000 -4.1 -11.7 threonine ammonia-lyase, biosynthetic compare
ABID97_RS15360 -4.0 -7.1 GTP-binding protein compare
ABID97_RS02510 -4.0 -27.2 NADP-dependent malic enzyme compare
ABID97_RS09180 -3.9 -6.0 DNA polymerase I compare
ABID97_RS02600 -3.9 -3.8 homoserine O-acetyltransferase compare
ABID97_RS16535 -3.8 -10.6 arginine/lysine/ornithine decarboxylase compare
ABID97_RS13990 -3.8 -4.5 amino acid aminotransferase compare
ABID97_RS13860 -3.7 -10.3 hypothetical protein compare
ABID97_RS23455 -3.7 -2.5 hypothetical protein compare
ABID97_RS23220 -3.7 -1.9 glutamate synthase subunit beta compare
ABID97_RS05275 -3.6 -2.5 anthranilate phosphoribosyltransferase compare
ABID97_RS03680 -3.6 -9.5 lysophospholipid transporter LplT compare
ABID97_RS21150 -3.2 -11.2 FAD-dependent oxidoreductase compare
ABID97_RS05370 -3.1 -5.6 ATP-binding protein compare
ABID97_RS07500 -3.1 -3.0 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS12180 -3.1 -2.9 hypothetical protein compare
ABID97_RS02455 -3.0 -6.3 nucleotidyltransferase family protein compare
ABID97_RS17970 -3.0 -9.2 protein TolQ compare
ABID97_RS05280 -2.9 -2.0 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS05755 -2.9 -2.8 glycosyltransferase compare
ABID97_RS08435 -2.9 -2.0 phosphoribosylanthranilate isomerase compare
ABID97_RS03800 -2.9 -2.8 O-antigen ligase family protein compare
ABID97_RS07430 -2.8 -10.1 pantoate--beta-alanine ligase compare
ABID97_RS15465 -2.8 -13.8 sulfate ABC transporter substrate-binding protein compare
ABID97_RS23450 -2.8 -5.6 MBOAT family protein compare
ABID97_RS06460 -2.8 -1.9 sigma 54-interacting transcriptional regulator compare
ABID97_RS04505 -2.7 -3.1 ferric iron uptake transcriptional regulator compare
ABID97_RS14095 -2.6 -12.7 PAS domain S-box protein compare
ABID97_RS26600 -2.6 -4.4 ATP-binding protein compare
ABID97_RS14090 -2.6 -2.0 response regulator transcription factor compare
ABID97_RS17850 -2.6 -1.3 tetratricopeptide repeat protein compare
ABID97_RS03910 -2.6 -2.4 orotate phosphoribosyltransferase compare
ABID97_RS08445 -2.5 -9.5 FimV/HubP family polar landmark protein compare
ABID97_RS00255 -2.5 -14.3 type IV pilus twitching motility protein PilT compare
ABID97_RS05365 -2.5 -4.6 DUF4390 domain-containing protein compare
ABID97_RS06450 -2.4 -2.3 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS28990 -2.4 -7.1 aspartate 1-decarboxylase compare
ABID97_RS15665 -2.3 -8.3 [protein-PII] uridylyltransferase compare
ABID97_RS24170 -2.3 -7.2 ATP-binding protein compare
ABID97_RS05750 -2.3 -3.0 glycosyltransferase compare
ABID97_RS02120 -2.3 -11.7 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS17590 -2.3 -13.3 endopeptidase La compare
ABID97_RS04500 -2.3 -2.1 HPr(Ser) kinase/phosphatase compare
ABID97_RS08480 -2.2 -1.5 citrate synthase compare
ABID97_RS08775 -2.2 -2.5 ribosome small subunit-dependent GTPase A compare
ABID97_RS05670 -2.2 -1.5 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS02110 -2.1 -16.3 type IV pilus modification protein PilV compare
ABID97_RS09935 -2.1 -11.8 hypothetical protein compare
ABID97_RS02115 -2.1 -10.5 PilW family protein compare
ABID97_RS12140 -2.1 -7.1 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS17635 -2.1 -3.8 presqualene diphosphate synthase HpnD compare
ABID97_RS05765 -2.1 -3.4 UDP-glucose 4-epimerase GalE compare
ABID97_RS04885 -2.1 -13.0 YbdK family carboxylate-amine ligase compare
ABID97_RS25525 -2.1 -5.2 LacI family DNA-binding transcriptional regulator compare
ABID97_RS06275 -2.0 -1.9 crossover junction endodeoxyribonuclease RuvC compare
ABID97_RS07435 -2.0 -6.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS26605 -1.9 -2.9 sigma-54 dependent transcriptional regulator compare
ABID97_RS01650 -1.9 -1.3 orotidine-5'-phosphate decarboxylase compare
ABID97_RS02125 -1.9 -15.5 PilC/PilY family type IV pilus protein compare
ABID97_RS23435 -1.9 -12.3 type II secretion system F family protein compare
ABID97_RS08430 -1.9 -1.8 tryptophan synthase subunit beta compare
ABID97_RS16695 -1.9 -12.7 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS09595 -1.9 -1.7 Arc family DNA-binding protein compare
ABID97_RS04890 -1.8 -6.5 cation:proton antiporter compare
ABID97_RS15995 -1.8 -8.1 PilZ domain-containing protein compare
ABID97_RS24705 -1.8 -5.7 response regulator compare
ABID97_RS23440 -1.8 -12.5 A24 family peptidase compare
ABID97_RS03915 -1.8 -7.6 DUF4124 domain-containing protein compare
ABID97_RS24920 -1.8 -2.1 Holliday junction branch migration protein RuvA compare
ABID97_RS02135 -1.8 -6.1 GspH/FimT family pseudopilin compare
ABID97_RS03805 -1.8 -1.6 ATP-binding protein compare
ABID97_RS07410 -1.8 -4.6 carboxylating nicotinate-nucleotide diphosphorylase compare
ABID97_RS23430 -1.8 -8.5 type IV-A pilus assembly ATPase PilB compare
ABID97_RS16690 -1.8 -7.5 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS02140 -1.7 -6.3 sugar transferase compare
ABID97_RS07415 -1.7 -10.6 quinolinate synthase NadA compare
ABID97_RS02130 -1.7 -9.6 type IV pilin protein compare
ABID97_RS06160 -1.7 -8.2 GTP-binding protein compare
ABID97_RS10705 -1.7 -3.8 H-NS histone family protein compare
ABID97_RS08710 -1.6 -6.7 polynucleotide adenylyltransferase PcnB compare
ABID97_RS18205 -1.6 -2.6 XRE family transcriptional regulator compare
ABID97_RS06175 -1.6 -12.9 STAS domain-containing protein compare
ABID97_RS19375 -1.6 -4.7 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
ABID97_RS23270 -1.6 -6.5 pilus assembly protein PilP compare
ABID97_RS20610 -1.6 -4.7 DNA-binding protein YbiB compare
ABID97_RS15490 -1.6 -5.9 FMNH2-dependent alkanesulfonate monooxygenase compare
ABID97_RS08360 -1.6 -6.9 DUF4845 domain-containing protein compare
ABID97_RS22705 -1.6 -8.4 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS25085 -1.5 -3.1 2-hydroxychromene-2-carboxylate isomerase compare
ABID97_RS01825 -1.5 -10.5 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS23650 -1.5 -11.4 serine/threonine-protein kinase compare
ABID97_RS14625 -1.5 -4.5 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS06365 -1.5 -1.5 TlpA disulfide reductase family protein compare
ABID97_RS14105 -1.5 -2.1 dihydrolipoyllysine-residue acetyltransferase compare
ABID97_RS28600 -1.5 -1.1 aspartate aminotransferase family protein compare
ABID97_RS06315 -1.5 -9.6 YqiA/YcfP family alpha/beta fold hydrolase compare
ABID97_RS06415 -1.5 -9.6 sigma-54 dependent transcriptional regulator compare
ABID97_RS28000 -1.5 -1.1 NADPH-dependent FMN reductase compare
ABID97_RS01840 -1.4 -8.4 DUF1631 family protein compare
ABID97_RS02145 -1.4 -7.5 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS04960 -1.4 -1.1 ATP-binding protein compare
ABID97_RS07440 -1.4 -8.4 L-aspartate oxidase compare
ABID97_RS26540 -1.4 -2.3 dihydrolipoyl dehydrogenase compare
ABID97_RS23380 -1.4 -8.6 lytic transglycosylase domain-containing protein compare
ABID97_RS26535 -1.4 -3.3 dihydrolipoyllysine-residue acetyltransferase compare
ABID97_RS23285 -1.4 -7.8 pilus assembly protein PilM compare
ABID97_RS02210 -1.4 -7.6 pilin compare
ABID97_RS15130 -1.4 -1.6 contractile injection system protein, VgrG/Pvc8 family compare
ABID97_RS24690 -1.4 -5.8 methyl-accepting chemotaxis protein compare
ABID97_RS15505 -1.4 -1.2 ATP-binding cassette domain-containing protein compare
ABID97_RS15495 -1.3 -3.7 aliphatic sulfonate ABC transporter permease SsuC compare
ABID97_RS13325 -1.3 -1.5 antibiotic biosynthesis monooxygenase compare
ABID97_RS02460 -1.3 -9.8 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS19010 -1.3 -1.3 hypothetical protein compare
ABID97_RS16470 -1.3 -1.9 translational GTPase TypA compare
ABID97_RS15470 -1.3 -2.6 NADPH-dependent FMN reductase compare
ABID97_RS10695 -1.3 -6.5 YbhB/YbcL family Raf kinase inhibitor-like protein compare
ABID97_RS14115 -1.3 -4.6 dihydrolipoyl dehydrogenase compare
ABID97_RS01415 -1.3 -2.5 DUF1840 domain-containing protein compare
ABID97_RS13865 -1.3 -3.5 hypothetical protein compare
ABID97_RS08220 -1.3 -8.6 phosphoenolpyruvate carboxylase compare
ABID97_RS10720 -1.3 -4.9 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABID97_RS16785 -1.3 -2.4 transporter compare
ABID97_RS14100 -1.3 -8.3 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABID97_RS02200 -1.3 -10.7 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABID97_RS23645 -1.3 -1.8 PP2C family serine/threonine-protein phosphatase compare
ABID97_RS25405 -1.2 -7.4 16S ribosomal RNA compare
ABID97_RS23265 -1.2 -7.2 type IV pilus secretin PilQ compare
ABID97_RS06600 -1.2 -5.7 5-formyltetrahydrofolate cyclo-ligase compare
ABID97_RS14215 -1.2 -5.3 type IV pilus biogenesis/stability protein PilW compare
ABID97_RS08440 -1.2 -5.1 tRNA pseudouridine(38-40) synthase TruA compare
ABID97_RS24370 -1.2 -2.4 DUF1841 family protein compare
ABID97_RS17425 -1.2 -7.4 TonB-dependent receptor compare
ABID97_RS23275 -1.2 -5.6 type 4a pilus biogenesis protein PilO compare
ABID97_RS17265 -1.2 -3.1 two-component system response regulator OmpR compare
ABID97_RS14200 -1.2 -4.3 pseudouridine synthase compare
ABID97_RS16985 -1.2 -3.4 transcriptional repressor LexA compare
ABID97_RS14700 -1.2 -2.4 recombination mediator RecR compare
ABID97_RS04765 -1.2 -1.7 thiol:disulfide interchange protein DsbA/DsbL compare
ABID97_RS06095 -1.2 -8.6 MBL fold metallo-hydrolase compare
ABID97_RS14665 -1.2 -2.6 UvrD-helicase domain-containing protein compare
ABID97_RS15480 -1.2 -5.2 sulfonate ABC transporter substrate-binding protein compare
ABID97_RS19380 -1.1 -2.5 2-methylcitrate synthase compare
ABID97_RS14850 -1.1 -3.0 P-II family nitrogen regulator compare
ABID97_RS24060 -1.1 -1.1 VOC family protein compare
ABID97_RS03110 -1.1 -4.3 helix-turn-helix transcriptional regulator compare
ABID97_RS20265 -1.1 -2.6 site-specific tyrosine recombinase XerD compare
ABID97_RS27450 -1.1 -1.0 biotin-independent malonate decarboxylase subunit gamma compare
ABID97_RS27760 -1.1 -1.1 DUF3237 domain-containing protein compare
ABID97_RS07630 -1.1 -1.9 cytochrome o ubiquinol oxidase subunit III compare
ABID97_RS17200 -1.1 -8.5 ribonuclease R compare
ABID97_RS19645 -1.1 -4.6 glycine cleavage system aminomethyltransferase GcvT compare
ABID97_RS25345 -1.1 -6.0 transporter associated domain-containing protein compare
ABID97_RS21165 -1.1 -3.1 energy-dependent translational throttle protein EttA compare
ABID97_RS16315 -1.1 -3.2 hypothetical protein compare
ABID97_RS10295 -1.1 -1.4 winged helix-turn-helix transcriptional regulator compare
ABID97_RS10685 -1.0 -5.0 hypothetical protein compare
ABID97_RS08195 -1.0 -5.1 histidine kinase compare
ABID97_RS08350 -1.0 -7.4 translation elongation factor 4 compare
ABID97_RS23280 -1.0 -3.6 PilN domain-containing protein compare
ABID97_RS25900 -1.0 -2.1 ABC transporter permease compare
ABID97_RS26530 -1.0 -4.5 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABID97_RS02605 -1.0 -7.2 TMEM165/GDT1 family protein compare
ABID97_RS03630 -1.0 -3.6 P-II family nitrogen regulator compare
ABID97_RS17595 -1.0 -5.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABID97_RS06180 -1.0 -3.4 ATP-dependent protease subunit HslV compare
ABID97_RS17895 -1.0 -6.0 transcriptional regulator NrdR compare
ABID97_RS15580 -1.0 -3.1 sulfate ABC transporter permease subunit CysW compare
ABID97_RS01195 -1.0 -0.8 2-hydroxyacid dehydrogenase compare
ABID97_RS19495 -1.0 -3.4 glucan biosynthesis protein D compare
ABID97_RS06565 -1.0 -7.5 alpha,alpha-trehalose-phosphate synthase (UDP-forming) compare
ABID97_RS07850 -1.0 -5.0 ABC transporter ATP-binding protein compare
ABID97_RS24045 -1.0 -2.1 type II toxin-antitoxin system prevent-host-death family antitoxin compare
ABID97_RS09940 -1.0 -2.3 nitrogen regulation protein NR(II) compare
ABID97_RS06150 -1.0 -4.7 tyrosine recombinase XerC compare
ABID97_RS05740 -1.0 -2.8 glycosyltransferase family A protein compare
ABID97_RS14505 -1.0 -8.0 hypothetical protein compare
ABID97_RS17550 -1.0 -6.0 fumarate hydratase compare


Specific Phenotypes

None in this experiment

For Variovorax sp. OAS795 in carbon source experiments

For carbon source Sodium succinate dibasic hexahydrate across organisms