Experiment set1IT067 for Magnetospirillum magneticum AMB-1

Compare to:

30_initial_2

200 most important genes:

  gene name fitness t score description  
AMB_RS01190 -1.9 -6.9 UbiD family decarboxylase compare
AMB_RS11740 -1.8 -12.7 ubiquinone-binding protein compare
AMB_RS21290 -1.7 -2.2 DUF4139 domain-containing protein compare
AMB_RS19545 -1.7 -4.4 elongation factor 4 compare
AMB_RS14035 -1.7 -5.8 endopeptidase La compare
AMB_RS20120 -1.7 -4.7 VOC family protein compare
AMB_RS07745 -1.6 -4.1 disulfide bond formation protein B compare
AMB_RS17350 -1.6 -2.3 rubrerythrin compare
AMB_RS19790 -1.6 -5.4 NAD(P)-dependent oxidoreductase compare
AMB_RS22800 -1.6 -3.5 glutathione synthase compare
AMB_RS02025 -1.6 -2.1 hypothetical protein compare
AMB_RS00355 -1.6 -8.7 radical SAM protein compare
AMB_RS20350 -1.5 -5.7 aspartate 1-decarboxylase compare
AMB_RS11195 -1.4 -1.4 sulfate adenylyltransferase subunit 2 compare
AMB_RS11640 -1.4 -2.5 UbiX family flavin prenyltransferase compare
AMB_RS00010 -1.4 -1.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
AMB_RS15295 -1.4 -2.2 iron donor protein CyaY compare
AMB_RS01605 -1.3 -2.6 aspartate aminotransferase family protein compare
AMB_RS05530 -1.3 -6.0 glycosyltransferase compare
AMB_RS14175 -1.2 -1.4 COQ9 family protein compare
AMB_RS07010 -1.2 -5.8 ATP-dependent helicase compare
AMB_RS04050 -1.2 -9.0 thiamine pyrophosphate-binding protein compare
AMB_RS14245 -1.2 -1.0 DUF1849 domain-containing protein compare
AMB_RS16100 -1.2 -4.9 RNA polymerase sigma factor RpoH compare
AMB_RS03835 -1.1 -1.5 YicC family protein compare
AMB_RS19880 -1.1 -3.9 site-specific tyrosine recombinase XerD compare
AMB_RS13920 -1.1 -2.2 molybdopterin-guanine dinucleotide biosynthesis protein B compare
AMB_RS04045 -1.1 -7.6 B12-binding domain-containing radical SAM protein compare
AMB_RS16080 -1.1 -2.4 tRNA-Glu compare
AMB_RS12395 -1.0 -2.1 succinate dehydrogenase assembly factor 2 compare
AMB_RS04060 -1.0 -7.7 pyridoxal phosphate-dependent aminotransferase compare
AMB_RS00820 -1.0 -3.4 GDP-L-fucose synthase compare
AMB_RS07865 -1.0 -4.9 ATP-dependent chaperone ClpB compare
AMB_RS21455 -1.0 -4.4 XRE family transcriptional regulator compare
AMB_RS02240 -0.9 -2.2 surface lipoprotein compare
AMB_RS00795 -0.9 -6.8 LPS biosynthesis protein compare
AMB_RS03510 -0.9 -4.6 flagellin-like protein compare
AMB_RS02485 -0.9 -1.9 hypothetical protein compare
AMB_RS16375 -0.9 -2.3 MFS transporter compare
AMB_RS07110 -0.9 -2.0 Lrp/AsnC family transcriptional regulator compare
AMB_RS03205 -0.9 -1.7 DNA recombination/repair protein RecA compare
AMB_RS05435 -0.9 -2.1 ABC transporter permease compare
AMB_RS21385 -0.8 -4.2 helix-turn-helix transcriptional regulator compare
AMB_RS17585 -0.8 -5.3 type I secretion system ATPase compare
AMB_RS12885 -0.8 -1.6 hypothetical protein compare
AMB_RS24000 -0.8 -1.5 glycosyltransferase family 1 protein compare
AMB_RS03135 -0.8 -2.6 NADP-dependent isocitrate dehydrogenase compare
AMB_RS17850 -0.8 -1.5 nuclease compare
AMB_RS14025 -0.8 -1.7 tRNA-Val compare
AMB_RS11535 -0.8 -1.4 ChbG/HpnK family deacetylase compare
AMB_RS00815 -0.8 -5.4 hypothetical protein compare
AMB_RS20020 -0.8 -1.3 cell division protein ZapE compare
AMB_RS23065 -0.8 -2.4 hypothetical protein compare
AMB_RS13400 -0.8 -3.8 formylglycine-generating enzyme family protein compare
AMB_RS15410 -0.8 -4.9 outer membrane protein compare
AMB_RS15550 -0.8 -5.0 copper chaperone PCu(A)C compare
AMB_RS12320 -0.8 -1.9 septal ring lytic transglycosylase RlpA family protein compare
AMB_RS12090 -0.8 -2.0 hypothetical protein compare
AMB_RS11295 -0.8 -2.7 hypothetical protein compare
AMB_RS23195 -0.7 -2.5 ABC transporter ATP-binding protein compare
AMB_RS20770 -0.7 -2.0 TrkH family potassium uptake protein compare
AMB_RS14525 -0.7 -0.8 xylanase/chitin deacetylase compare
AMB_RS15610 -0.7 -3.0 hypothetical protein compare
AMB_RS22450 -0.7 -4.8 electron transfer flavoprotein-ubiquinone oxidoreductase compare
AMB_RS23090 -0.7 -3.5 NAD(P)-dependent oxidoreductase compare
AMB_RS01330 -0.7 -2.5 glycosyltransferase family 39 protein compare
AMB_RS16680 -0.7 -1.9 organic hydroperoxide resistance protein compare
AMB_RS04460 -0.7 -1.3 hypothetical protein compare
AMB_RS12325 -0.7 -2.3 lytic murein transglycosylase compare
AMB_RS06005 -0.7 -2.3 hypothetical protein compare
AMB_RS02660 -0.7 -2.8 SCO family protein compare
AMB_RS20750 -0.7 -4.6 YbaB/EbfC family nucleoid-associated protein compare
AMB_RS23015 -0.7 -2.2 septum formation protein Maf compare
AMB_RS02125 -0.7 -1.1 LemA family protein compare
AMB_RS07115 -0.7 -2.2 Lrp/AsnC family transcriptional regulator compare
AMB_RS18590 -0.7 -1.7 glycosyltransferase family 2 protein compare
AMB_RS22150 -0.7 -1.2 MarR family transcriptional regulator compare
AMB_RS13510 -0.7 -2.8 cytochrome C protein NapC compare
AMB_RS04680 -0.7 -2.1 transposase compare
AMB_RS14595 -0.7 -3.1 acetoin utilization protein compare
AMB_RS13415 -0.7 -4.0 sulfurtransferase FdhD compare
AMB_RS24445 -0.7 -2.5 hypothetical protein compare
AMB_RS02815 -0.7 -4.3 hypothetical protein compare
AMB_RS11300 -0.7 -4.9 adenylate/guanylate cyclase domain-containing protein compare
AMB_RS22085 -0.7 -6.5 cytochrome c oxidase accessory protein CcoG compare
AMB_RS10350 -0.7 -1.4 DNA polymerase III subunit epsilon compare
AMB_RS21725 -0.7 -1.4 hemerythrin compare
AMB_RS24620 -0.7 -3.0 hypothetical protein compare
AMB_RS22315 -0.7 -2.8 membrane protein compare
AMB_RS00075 -0.7 -0.9 P-II family nitrogen regulator compare
AMB_RS00800 -0.7 -3.2 nucleoside-diphosphate-sugar pyrophosphorylase compare
AMB_RS22235 -0.7 -1.4 RNase adaptor protein RapZ compare
AMB_RS15540 -0.7 -2.8 SCO family protein compare
AMB_RS17625 -0.7 -4.7 hopanoid biosynthesis associated radical SAM protein HpnJ compare
AMB_RS05495 -0.6 -5.1 hypothetical protein compare
AMB_RS08455 -0.6 -4.6 branched-chain amino acid ABC transporter permease compare
AMB_RS12615 -0.6 -2.7 phytoene/squalene synthetase compare
AMB_RS01305 -0.6 -4.4 protocatechuate 4,5-dioxygenase subunit alpha compare
AMB_RS23865 -0.6 -2.0 DUF2786 domain-containing protein compare
AMB_RS24670 -0.6 -3.4 DUF2813 domain-containing protein compare
AMB_RS14620 -0.6 -2.0 ArsR family transcriptional regulator compare
AMB_RS04280 -0.6 -4.8 polyhydroxyalkanoate synthesis repressor PhaR compare
AMB_RS18110 -0.6 -1.0 cAMP-binding protein compare
AMB_RS07240 -0.6 -4.2 PAS domain-containing sensor histidine kinase compare
AMB_RS14855 -0.6 -1.4 molybdate ABC transporter substrate-binding protein compare
AMB_RS08460 -0.6 -3.9 branched-chain amino acid ABC transporter permease compare
AMB_RS16130 -0.6 -1.4 phosphoglycerate dehydrogenase compare
AMB_RS03920 -0.6 -2.0 hypothetical protein compare
AMB_RS22770 -0.6 -2.4 radical SAM protein compare
AMB_RS11305 -0.6 -4.5 CHAT domain-containing protein compare
AMB_RS21750 -0.6 -1.0 DNA-binding response regulator compare
AMB_RS02650 -0.6 -3.0 uroporphyrinogen-III C-methyltransferase compare
AMB_RS20870 -0.6 -0.9 gamma-glutamyl-gamma-aminobutyrate hydrolase compare
AMB_RS13525 -0.6 -1.4 ferredoxin-type protein NapG compare
AMB_RS04630 -0.6 -0.7 tRNA-Met compare
AMB_RS21210 -0.6 -2.4 hydroxyacylglutathione hydrolase compare
AMB_RS07075 -0.6 -4.0 cytochrome c-552 precursor compare
AMB_RS23055 -0.6 -1.8 methylated-DNA--protein-cysteine methyltransferase compare
AMB_RS14270 -0.6 -2.1 response regulator compare
AMB_RS09095 -0.6 -2.4 hypothetical protein compare
AMB_RS06370 -0.6 -1.8 DNA-binding response regulator compare
AMB_RS00480 -0.6 -3.0 methyltransferase domain-containing protein compare
AMB_RS17800 -0.6 -1.6 anti-sigma factor antagonist compare
AMB_RS00810 -0.6 -2.9 hypothetical protein compare
AMB_RS23950 -0.6 -2.1 hemerythrin compare
AMB_RS03655 -0.6 -2.4 hypothetical protein compare
AMB_RS12855 -0.6 -1.8 hypothetical protein compare
AMB_RS21050 -0.6 -1.0 CoA pyrophosphatase compare
AMB_RS17310 -0.6 -5.3 tandem-95 repeat protein compare
AMB_RS13325 -0.5 -1.2 response regulator compare
AMB_RS00130 -0.5 -1.9 tetratricopeptide repeat protein compare
AMB_RS02100 -0.5 -2.6 transposase compare
AMB_RS21310 -0.5 -1.0 zinc-finger domain-containing protein compare
AMB_RS21265 -0.5 -2.0 c-type cytochrome biogenesis protein CcmI compare
AMB_RS10685 -0.5 -2.9 hypothetical protein compare
AMB_RS08115 -0.5 -3.0 carbon-nitrogen hydrolase family protein compare
AMB_RS17590 -0.5 -3.4 HlyD family type I secretion periplasmic adaptor subunit compare
AMB_RS00805 -0.5 -4.3 haloacid dehalogenase compare
AMB_RS02685 -0.5 -4.4 glutamate synthase large subunit compare
AMB_RS09150 -0.5 -1.6 Cu(I)-responsive transcriptional regulator compare
AMB_RS01855 -0.5 -2.4 hypothetical protein compare
AMB_RS00080 -0.5 -1.6 ammonium transporter compare
AMB_RS00850 -0.5 -2.5 LD-carboxypeptidase compare
AMB_RS08450 -0.5 -4.0 ABC transporter substrate-binding protein compare
AMB_RS09280 -0.5 -1.8 ArsR family transcriptional regulator compare
AMB_RS09845 -0.5 -1.3 hypothetical protein compare
AMB_RS21280 -0.5 -1.7 TVP38/TMEM64 family protein compare
AMB_RS04035 -0.5 -1.5 hypothetical protein compare
AMB_RS20015 -0.5 -3.7 exopolyphosphatase compare
AMB_RS19255 -0.5 -3.5 excinuclease ABC subunit UvrB compare
AMB_RS10115 -0.5 -1.8 aminoacyl-tRNA hydrolase compare
AMB_RS14505 -0.5 -2.3 carbon monoxide dehydrogenase compare
AMB_RS21445 -0.5 -3.1 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha compare
AMB_RS05095 -0.5 -3.0 hemerythrin compare
AMB_RS05485 -0.5 -2.9 kinase compare
AMB_RS03725 -0.5 -2.2 DNA helicase II compare
AMB_RS13520 -0.5 -2.5 quinol dehydrogenase ferredoxin subunit NapH compare
AMB_RS21435 -0.5 -4.4 methylmalonyl-CoA mutase compare
AMB_RS24555 -0.5 -1.3 chemotaxis protein compare
AMB_RS20755 -0.5 -1.5 recombination protein RecR compare
AMB_RS24475 -0.5 -2.8 hypothetical protein compare
AMB_RS15605 -0.5 -2.8 ChbG/HpnK family deacetylase compare
AMB_RS07875 -0.5 -2.2 homocitrate synthase compare
AMB_RS17450 -0.5 -1.3 DUF1987 domain-containing protein compare
AMB_RS17405 -0.5 -1.4 hypothetical protein compare
AMB_RS04740 -0.5 -1.7 hypothetical protein compare
AMB_RS05090 -0.5 -2.4 hypothetical protein compare
AMB_RS23070 -0.5 -1.4 ferredoxin compare
AMB_RS21825 -0.5 -1.9 chitin deacetylase compare
AMB_RS15930 -0.5 -1.2 hypothetical protein compare
AMB_RS04885 -0.5 -0.8 hypothetical protein compare
AMB_RS07570 -0.5 -0.7 hypothetical protein compare
AMB_RS01325 -0.5 -1.2 phosphatase PAP2 family protein compare
AMB_RS18330 -0.5 -2.7 glycosyl transferase family protein compare
AMB_RS01185 -0.5 -3.1 HD domain-containing protein compare
AMB_RS17980 -0.5 -2.4 biopolymer transporter ExbD compare
AMB_RS13535 -0.5 -1.6 hypothetical protein compare
AMB_RS03105 -0.5 -1.4 hypothetical protein compare
AMB_RS18850 -0.5 -1.4 class I poly(R)-hydroxyalkanoic acid synthase compare
AMB_RS00180 -0.5 -2.2 hypothetical protein compare
AMB_RS02560 -0.5 -2.1 GTP-binding protein compare
AMB_RS09120 -0.5 -2.1 ABC transporter ATP-binding protein compare
AMB_RS12785 -0.5 -1.7 murein transglycosylase compare
AMB_RS09565 -0.5 -1.6 hypothetical protein compare
AMB_RS23330 -0.4 -2.3 hypothetical protein compare
AMB_RS04325 -0.4 -2.2 TetR/AcrR family transcriptional regulator compare
AMB_RS00745 -0.4 -1.6 MFS transporter compare
AMB_RS12390 -0.4 -2.7 transcription-repair coupling factor compare
AMB_RS24680 -0.4 -1.3 hypothetical protein compare
AMB_RS24520 -0.4 -2.7 phosphodiesterase compare
AMB_RS21185 -0.4 -2.1 GntR family transcriptional regulator compare
AMB_RS08465 -0.4 -3.2 ABC transporter ATP-binding protein compare
AMB_RS17645 -0.4 -3.4 iron-sulfur cluster carrier protein ApbC compare
AMB_RS11910 -0.4 -3.1 tetratricopeptide repeat protein compare
AMB_RS10985 -0.4 -0.7 hypothetical protein compare
AMB_RS01795 -0.4 -2.0 DUF669 domain-containing protein compare
AMB_RS02675 -0.4 -2.3 YcgN family cysteine cluster protein compare
AMB_RS04455 -0.4 -3.1 energy-dependent translational throttle protein EttA compare
AMB_RS14800 -0.4 -0.5 hypothetical protein compare
AMB_RS12880 -0.4 -1.1 membrane protein compare


Specific Phenotypes

None in this experiment

For Magnetospirillum magneticum AMB-1 in magnetic pulldown experiments

For magnetic pulldown Iron across organisms