Experiment set1IT065 for Pontibacter actiniarum KMM 6156, DSM 19842

Compare to:

marine broth with Sodium nitrite 30 mM

200 most detrimental genes:

  gene name fitness t score description  
CA264_16360 +1.5 10.1 gliding motility protein GldM compare
CA264_15010 +1.4 8.7 gliding motility lipoprotein GldD compare
CA264_08070 +1.4 8.2 gliding motility-associated ABC transporter substrate-binding protein GldG compare
CA264_19555 +1.4 7.1 GNAT family N-acetyltransferase compare
CA264_08075 +1.4 7.0 gliding motility-associated ABC transporter permease subunit GldF compare
CA264_17235 +1.4 10.0 gliding motility lipoprotein GldJ compare
CA264_16370 +1.4 9.9 gliding motility lipoprotein GldK compare
CA264_06355 +1.3 10.1 ergothioneine biosynthesis protein EgtB compare
CA264_10920 +1.3 9.5 helix-turn-helix-type transcriptional regulator compare
CA264_16355 +1.3 5.6 gliding motility protein GldN compare
CA264_02025 +1.2 7.7 nitroreductase compare
CA264_08080 +1.2 6.3 gliding motility-associated ABC transporter ATP-binding subunit GldA compare
CA264_16365 +1.1 4.4 gliding motility protein GldL compare
CA264_15745 +1.1 1.6 tRNA-Arg compare
CA264_19540 +1.0 6.2 hypothetical protein compare
CA264_01390 +1.0 5.8 iron ABC transporter permease compare
CA264_15170 +1.0 5.9 biopolymer transporter ExbD compare
CA264_19150 +1.0 7.3 TonB dependent receptor compare
CA264_20010 +0.9 5.0 gliding motility lipoprotein GldH compare
CA264_14970 +0.9 6.7 gliding motility lipoprotein GldB compare
CA264_12150 +0.9 2.7 hypothetical protein compare
CA264_15165 +0.9 4.3 flagellar motor protein MotA compare
CA264_15000 +0.8 1.3 single-stranded DNA-binding protein compare
CA264_18135 +0.8 4.3 ABC transporter ATP-binding protein compare
CA264_01065 +0.8 2.0 MarR family transcriptional regulator compare
CA264_19005 +0.8 7.2 SusC/RagA family TonB-linked outer membrane protein compare
CA264_03810 +0.8 2.1 hypothetical protein compare
CA264_21040 +0.8 3.5 transcriptional regulator compare
CA264_14635 +0.8 5.8 hypothetical protein compare
CA264_07245 +0.8 4.1 hypothetical protein compare
CA264_02685 +0.8 4.7 hypothetical protein compare
CA264_00455 +0.8 5.3 PorT-like protein compare
CA264_14550 +0.8 7.2 cell surface protein SprA compare
CA264_00295 +0.7 2.9 hypothetical protein compare
CA264_16410 +0.7 5.8 hypothetical protein compare
CA264_10255 +0.7 1.9 hypothetical protein compare
CA264_06335 +0.7 1.3 Na+/H+ antiporter subunit G compare
CA264_15175 +0.7 1.2 biopolymer transporter ExbD compare
CA264_19750 +0.7 2.5 IMP dehydrogenase compare
CA264_01385 +0.7 5.0 iron ABC transporter substrate-binding protein compare
CA264_15230 +0.7 4.8 hypothetical protein compare
CA264_12160 +0.7 1.9 transcriptional regulator compare
CA264_14350 +0.7 3.2 hemolysin compare
CA264_13015 +0.7 5.0 sensor histidine kinase compare
CA264_05785 +0.7 1.6 cbb3-type cytochrome oxidase assembly protein CcoS compare
CA264_09735 +0.6 1.9 5-hydroxyisourate hydrolase compare
CA264_19545 +0.6 3.9 oxidoreductase compare
CA264_16340 +0.6 5.4 hypothetical protein compare
CA264_13420 +0.6 1.9 hypothetical protein compare
CA264_14805 +0.6 1.3 DNA-binding protein compare
CA264_18480 +0.6 1.0 hypothetical protein compare
CA264_02595 +0.6 1.6 oxidoreductase compare
CA264_03330 +0.6 1.8 peptide-methionine (R)-S-oxide reductase compare
CA264_15215 +0.6 3.8 hypothetical protein compare
CA264_08945 +0.6 2.8 type 1 glutamine amidotransferase domain-containing protein compare
CA264_06330 +0.6 1.2 cation:proton antiporter compare
CA264_01795 +0.6 2.8 hypothetical protein compare
CA264_12155 +0.6 1.2 histidine phosphatase family protein compare
CA264_19215 +0.6 2.9 RNA polymerase subunit sigma compare
CA264_04900 +0.6 3.1 bacillithiol biosynthesis deacetylase BshB1 compare
CA264_12085 +0.6 1.1 hypothetical protein compare
CA264_19840 +0.5 1.5 hypothetical protein compare
CA264_10285 +0.5 1.3 hypothetical protein compare
CA264_13535 +0.5 3.6 AraC family transcriptional regulator compare
CA264_04285 +0.5 2.1 hypothetical protein compare
CA264_10305 +0.5 0.9 hypothetical protein compare
CA264_18775 +0.5 1.0 hypothetical protein compare
CA264_01435 +0.5 2.7 anti-anti-sigma factor compare
CA264_20570 +0.5 1.3 inorganic pyrophosphatase compare
CA264_19220 +0.5 2.3 hypothetical protein compare
CA264_18030 +0.5 2.8 cation transporter compare
CA264_17320 +0.5 4.2 hypothetical protein compare
CA264_15045 +0.5 2.6 acetyl-CoA acetyltransferase compare
CA264_17305 +0.5 1.5 hypothetical protein compare
CA264_09070 +0.5 1.3 hypothetical protein compare
CA264_19920 +0.5 3.0 alanine glycine permease compare
CA264_00660 +0.5 3.2 hypothetical protein compare
CA264_09280 +0.5 2.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
CA264_01715 +0.5 1.6 4Fe-4S ferredoxin compare
CA264_12910 +0.5 1.0 acyl-CoA-binding protein compare
CA264_08120 +0.5 3.1 electron transfer flavoprotein subunit alpha compare
CA264_18970 +0.4 2.3 hypothetical protein compare
CA264_11970 +0.4 0.8 hypothetical protein compare
CA264_05225 +0.4 2.9 MBL fold metallo-hydrolase compare
CA264_19045 +0.4 1.7 acyl-CoA dehydrogenase compare
CA264_03385 +0.4 0.9 hypothetical protein compare
CA264_19010 +0.4 3.8 SusD/RagB family nutrient-binding outer membrane lipoprotein compare
CA264_14125 +0.4 2.6 endonuclease V compare
CA264_02690 +0.4 2.7 rhodanese compare
CA264_20660 +0.4 2.0 methylmalonyl Co-A mutase-associated GTPase MeaB compare
CA264_17640 +0.4 2.2 acyl-CoA dehydrogenase compare
CA264_09800 +0.4 2.7 DNA-binding response regulator compare
CA264_03905 +0.4 1.5 polysaccharide deacetylase family protein compare
CA264_21065 +0.4 1.6 transcriptional regulator compare
CA264_02035 +0.4 2.8 hypothetical protein compare
CA264_05005 +0.4 3.2 colicin receptor compare
CA264_10910 +0.4 3.2 phytoene dehydrogenase compare
CA264_10465 +0.4 0.6 organic hydroperoxide resistance protein compare
CA264_21185 +0.4 2.1 hypothetical protein compare
CA264_12935 +0.4 1.5 serine hydrolase compare
CA264_21255 +0.4 1.4 hypothetical protein compare
CA264_02150 +0.4 2.0 hypothetical protein compare
CA264_14590 +0.4 2.4 phosphoribosylformylglycinamidine synthase I compare
CA264_05630 +0.4 1.7 glycerol-3-phosphate dehydrogenase compare
CA264_15050 +0.4 3.5 3-hydroxyacyl-CoA dehydrogenase compare
CA264_19700 +0.4 2.6 hypothetical protein compare
CA264_16130 +0.4 0.9 TetR family transcriptional regulator compare
CA264_09430 +0.4 1.8 2-isopropylmalate synthase compare
CA264_20420 +0.4 1.2 thiazole synthase compare
CA264_19885 +0.4 2.3 uridine kinase compare
CA264_10275 +0.4 1.0 transcriptional regulator compare
CA264_10715 +0.4 1.7 hypothetical protein compare
CA264_09375 +0.4 1.1 transcriptional regulator compare
CA264_17595 +0.4 2.3 3-hydroxyacyl-CoA dehydrogenase compare
CA264_02450 +0.4 1.7 hypothetical protein compare
CA264_08105 +0.4 2.2 NupC/NupG family nucleoside CNT transporter compare
CA264_18215 +0.4 1.0 hypothetical protein compare
CA264_19815 +0.4 2.0 hypothetical protein compare
CA264_16100 +0.4 0.9 hypothetical protein compare
CA264_14110 +0.4 1.1 phosphoribosyltransferase compare
CA264_06325 +0.4 2.6 cation:proton antiporter compare
CA264_17095 +0.4 1.0 FeoB-associated Cys-rich membrane protein compare
CA264_05535 +0.4 2.8 hypothetical protein compare
CA264_14120 +0.4 2.0 hypothetical protein compare
CA264_06310 +0.4 2.2 cation:proton antiporter compare
CA264_10160 +0.4 1.5 STAS/SEC14 domain-containing protein compare
CA264_14360 +0.4 2.2 gamma carbonic anhydrase family protein compare
CA264_01265 +0.4 1.0 50S ribosomal protein L9 compare
CA264_04985 +0.4 2.3 hypothetical protein compare
CA264_21070 +0.4 2.1 transcriptional repressor compare
CA264_08420 +0.4 2.2 AraC family transcriptional regulator compare
CA264_06315 +0.4 1.7 cation:proton antiporter compare
CA264_12370 +0.4 2.6 hypothetical protein compare
CA264_12300 +0.3 0.8 RNase III inhibitor compare
CA264_14830 +0.3 3.1 DNA methyltransferase compare
CA264_14115 +0.3 1.4 hydrolase compare
CA264_03480 +0.3 1.8 hypothetical protein compare
CA264_00040 +0.3 2.4 hypothetical protein compare
CA264_06095 +0.3 0.8 hypothetical protein compare
CA264_06320 +0.3 2.5 Na+/H+ antiporter subunit D compare
CA264_08780 +0.3 2.5 hypothetical protein compare
CA264_02030 +0.3 1.5 hypothetical protein compare
CA264_03395 +0.3 2.5 phospholipase compare
CA264_11725 +0.3 0.8 hypothetical protein compare
CA264_05655 +0.3 2.5 FAD-binding protein compare
CA264_04710 +0.3 2.2 SAM-dependent methyltransferase compare
CA264_20120 +0.3 0.6 hypothetical protein compare
CA264_17735 +0.3 2.6 antibiotic ABC transporter ATP-binding protein compare
CA264_03610 +0.3 1.8 hypothetical protein compare
CA264_18810 +0.3 1.6 hypothetical protein compare
CA264_18060 +0.3 1.9 hypothetical protein compare
CA264_21525 +0.3 2.0 DUF305 domain-containing protein compare
CA264_00815 +0.3 1.8 cytidine deaminase compare
CA264_04540 +0.3 0.7 PspC family transcriptional regulator compare
CA264_04030 +0.3 2.0 multiple antibiotic resistance (MarC)-like protein compare
CA264_00905 +0.3 1.1 hypothetical protein compare
CA264_09820 +0.3 1.2 hypothetical protein compare
CA264_11620 +0.3 2.5 hypothetical protein compare
CA264_15040 +0.3 2.3 four helix bundle protein compare
CA264_07495 +0.3 0.8 GTP-binding protein YchF compare
CA264_01720 +0.3 1.6 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 compare
CA264_06700 +0.3 1.5 hypothetical protein compare
CA264_02795 +0.3 1.4 hypothetical protein compare
CA264_07295 +0.3 1.5 helix-turn-helix transcriptional regulator compare
CA264_19685 +0.3 0.3 DNA-binding response regulator compare
CA264_13175 +0.3 2.0 tail-specific protease compare
CA264_04625 +0.3 1.8 succinyl-CoA--3-ketoacid-CoA transferase compare
CA264_10575 +0.3 0.7 hypothetical protein compare
CA264_11315 +0.3 1.2 glycerophosphodiester phosphodiesterase compare
CA264_09730 +0.3 0.9 hypothetical protein compare
CA264_12325 +0.3 2.2 polysaccharide biosynthesis protein compare
CA264_12775 +0.3 1.6 TIGR02453 family protein compare
CA264_02910 +0.3 1.0 hypothetical protein compare
CA264_12340 +0.3 1.3 acetyltransferase compare
CA264_08330 +0.3 1.4 hypothetical protein compare
CA264_00345 +0.3 1.3 peptidyl-prolyl cis-trans isomerase compare
CA264_13660 +0.3 1.3 putative DNA modification/repair radical SAM protein compare
CA264_17685 +0.3 1.8 hypothetical protein compare
CA264_04270 +0.3 1.4 NADH:ubiquinone oxidoreductase subunit A compare
CA264_14910 +0.3 1.1 30S ribosomal protein THX compare
CA264_01855 +0.3 1.2 carbonic anhydrase compare
CA264_09650 +0.3 1.6 hypothetical protein compare
CA264_17310 +0.3 1.7 hypothetical protein compare
CA264_04800 +0.3 1.4 hypothetical protein compare
CA264_09415 +0.3 1.8 hypothetical protein compare
CA264_06845 +0.3 0.9 hypothetical protein compare
CA264_15840 +0.3 1.5 hypothetical protein compare
CA264_06540 +0.3 2.0 hypothetical protein compare
CA264_13315 +0.3 2.0 N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA compare
CA264_05175 +0.3 1.1 hypothetical protein compare
CA264_02790 +0.3 2.1 DUF2807 domain-containing protein compare
CA264_01835 +0.3 1.2 GNAT family N-acetyltransferase compare
CA264_19625 +0.3 2.2 DNA mismatch repair protein MutS compare
CA264_11880 +0.3 1.6 HAD family hydrolase compare
CA264_15340 +0.3 1.0 hypothetical protein compare
CA264_13825 +0.3 0.6 hypothetical protein compare
CA264_21385 +0.3 1.7 hypothetical protein compare
CA264_02700 +0.3 1.3 TIGR02453 family protein compare
CA264_12350 +0.3 1.9 glycosyltransferase family 1 protein compare
CA264_06445 +0.3 1.3 NUDIX hydrolase compare


Specific Phenotypes

None in this experiment

For Pontibacter actiniarum KMM 6156, DSM 19842 in stress experiments

For stress Sodium nitrite across organisms