Experiment set1IT065 for Magnetospirillum magneticum AMB-1

Compare to:

150_nonmag_3

200 most important genes:

  gene name fitness t score description  
AMB_RS00010 -3.6 -2.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
AMB_RS04280 -2.7 -13.5 polyhydroxyalkanoate synthesis repressor PhaR compare
AMB_RS21290 -2.6 -2.1 DUF4139 domain-containing protein compare
AMB_RS21310 -2.5 -2.0 zinc-finger domain-containing protein compare
AMB_RS14035 -2.3 -6.6 endopeptidase La compare
AMB_RS07010 -2.1 -6.4 ATP-dependent helicase compare
AMB_RS20740 -1.9 -9.5 hypothetical protein compare
AMB_RS16025 -1.8 -4.8 MFS transporter compare
AMB_RS05435 -1.8 -3.5 ABC transporter permease compare
AMB_RS00355 -1.8 -7.1 radical SAM protein compare
AMB_RS15550 -1.7 -4.4 copper chaperone PCu(A)C compare
AMB_RS22280 -1.6 -8.1 hypothetical protein compare
AMB_RS03205 -1.6 -2.2 DNA recombination/repair protein RecA compare
AMB_RS04510 -1.6 -4.6 ferrous iron transporter compare
AMB_RS20770 -1.5 -3.0 TrkH family potassium uptake protein compare
AMB_RS07555 -1.5 -1.9 DUF1566 domain-containing protein compare
AMB_RS19790 -1.5 -2.9 NAD(P)-dependent oxidoreductase compare
AMB_RS22760 -1.5 -1.8 ribonuclease PH compare
AMB_RS23090 -1.5 -2.7 NAD(P)-dependent oxidoreductase compare
AMB_RS03610 -1.4 -5.9 transcription elongation factor GreA compare
AMB_RS00480 -1.4 -6.1 methyltransferase domain-containing protein compare
AMB_RS19880 -1.4 -2.4 site-specific tyrosine recombinase XerD compare
AMB_RS02660 -1.3 -2.8 SCO family protein compare
AMB_RS06005 -1.3 -1.7 hypothetical protein compare
AMB_RS00815 -1.3 -6.9 hypothetical protein compare
AMB_RS16810 -1.3 -1.1 IS66 family insertion sequence hypothetical protein compare
AMB_RS00795 -1.2 -7.4 LPS biosynthesis protein compare
AMB_RS14270 -1.2 -2.7 response regulator compare
AMB_RS14430 -1.2 -2.0 LexA repressor compare
AMB_RS22565 -1.2 -7.8 MucR family transcriptional regulator compare
AMB_RS20595 -1.2 -2.9 ribosome maturation factor compare
AMB_RS23015 -1.2 -2.2 septum formation protein Maf compare
AMB_RS18590 -1.2 -1.1 glycosyltransferase family 2 protein compare
AMB_RS12425 -1.2 -1.2 RNA methyltransferase compare
AMB_RS04885 -1.2 -1.6 hypothetical protein compare
AMB_RS09860 -1.2 -1.5 hypothetical protein compare
AMB_RS21005 -1.2 -1.8 hypothetical protein compare
AMB_RS03045 -1.2 -0.4 hydrogen peroxide-inducible genes activator compare
AMB_RS15295 -1.1 -1.4 iron donor protein CyaY compare
AMB_RS17985 -1.1 -6.2 sulfite exporter TauE/SafE family protein compare
AMB_RS24520 -1.1 -4.6 phosphodiesterase compare
AMB_RS18370 -1.1 -0.3 hypothetical protein compare
AMB_RS20350 -1.1 -3.7 aspartate 1-decarboxylase compare
AMB_RS14505 -1.1 -2.4 carbon monoxide dehydrogenase compare
AMB_RS02025 -1.1 -1.0 hypothetical protein compare
AMB_RS05670 -1.1 -1.1 response regulator compare
AMB_RS21435 -1.1 -8.5 methylmalonyl-CoA mutase compare
AMB_RS04245 -1.1 -5.2 (R)-hydratase compare
AMB_RS24000 -1.0 -1.3 glycosyltransferase family 1 protein compare
AMB_RS14800 -1.0 -0.7 hypothetical protein compare
AMB_RS00805 -1.0 -6.2 haloacid dehalogenase compare
AMB_RS01605 -1.0 -1.1 aspartate aminotransferase family protein compare
AMB_RS05405 -1.0 -1.1 4Fe-4S dicluster domain-containing protein compare
AMB_RS17765 -1.0 -1.6 2-isopropylmalate synthase compare
AMB_RS06435 -1.0 -2.6 glycosyltransferase compare
AMB_RS19545 -1.0 -1.8 elongation factor 4 compare
AMB_RS22315 -1.0 -3.4 membrane protein compare
AMB_RS18145 -1.0 -2.6 GntR family transcriptional regulator compare
AMB_RS08695 -1.0 -1.1 hypothetical protein compare
AMB_RS17795 -1.0 -0.6 hypothetical protein compare
AMB_RS24245 -1.0 -1.8 hypothetical protein compare
AMB_RS06840 -1.0 -1.9 hypothetical protein compare
AMB_RS12785 -1.0 -2.6 murein transglycosylase compare
AMB_RS10475 -1.0 -1.1 transcriptional regulator NrdR compare
AMB_RS10200 -1.0 -5.0 4-hydroxybenzoyl-CoA reductase subunit alpha compare
AMB_RS07115 -1.0 -2.0 Lrp/AsnC family transcriptional regulator compare
AMB_RS00745 -1.0 -2.5 MFS transporter compare
AMB_RS10120 -1.0 -3.2 DUF1476 domain-containing protein compare
AMB_RS21385 -1.0 -2.4 helix-turn-helix transcriptional regulator compare
AMB_RS02125 -0.9 -1.4 LemA family protein compare
AMB_RS01150 -0.9 -1.4 hemerythrin compare
AMB_RS06045 -0.9 -0.4 hypothetical protein compare
AMB_RS04360 -0.9 -1.1 thiosulfate oxidation carrier protein SoxY compare
AMB_RS01930 -0.9 -1.3 DUF4172 domain-containing protein compare
AMB_RS00240 -0.9 -1.7 hypothetical protein compare
AMB_RS13170 -0.9 -1.3 electron transport complex subunit RsxG compare
AMB_RS12855 -0.9 -1.7 hypothetical protein compare
AMB_RS03265 -0.9 -5.5 enoyl-CoA hydratase compare
AMB_RS09570 -0.9 -1.5 baseplate assembly protein compare
AMB_RS05505 -0.9 -3.6 GDP-mannose 4,6-dehydratase compare
AMB_RS14290 -0.9 -3.0 exopolyphosphatase compare
AMB_RS00855 -0.9 -4.1 helix-turn-helix domain-containing protein compare
AMB_RS12395 -0.9 -1.6 succinate dehydrogenase assembly factor 2 compare
AMB_RS09070 -0.9 -3.5 gamma carbonic anhydrase family protein compare
AMB_RS00245 -0.9 -1.8 transcriptional activator RfaH compare
AMB_RS07625 -0.9 -1.5 hypothetical protein compare
AMB_RS10850 -0.9 -1.0 hypothetical protein compare
AMB_RS23915 -0.9 -2.0 XRE family transcriptional regulator compare
AMB_RS23950 -0.8 -3.8 hemerythrin compare
AMB_RS07805 -0.8 -1.5 hypothetical protein compare
AMB_RS10640 -0.8 -3.4 endolytic transglycosylase MltG compare
AMB_RS20120 -0.8 -1.8 VOC family protein compare
AMB_RS00820 -0.8 -2.3 GDP-L-fucose synthase compare
AMB_RS06670 -0.8 -2.0 CidA/LrgA family protein compare
AMB_RS16080 -0.8 -1.0 tRNA-Glu compare
AMB_RS09055 -0.8 -1.5 AsmA family protein compare
AMB_RS06410 -0.8 -2.8 metal-sulfur cluster assembly factor compare
AMB_RS23890 -0.8 -2.8 hypothetical protein compare
AMB_RS03110 -0.8 -0.8 membrane protein compare
AMB_RS05510 -0.8 -3.6 glycosyltransferase compare
AMB_RS00130 -0.8 -2.6 tetratricopeptide repeat protein compare
AMB_RS02180 -0.8 -0.6 double-strand break repair protein AddB compare
AMB_RS23095 -0.8 -3.5 class I SAM-dependent methyltransferase compare
AMB_RS10210 -0.8 -5.0 xanthine and CO dehydrogenase maturation factor compare
AMB_RS21455 -0.8 -2.3 XRE family transcriptional regulator compare
AMB_RS17445 -0.8 -1.5 hypothetical protein compare
AMB_RS16035 -0.8 -1.2 L(+)-tartrate dehydratase subunit alpha compare
AMB_RS04035 -0.8 -1.9 hypothetical protein compare
AMB_RS22490 -0.8 -0.7 YdcF family protein compare
AMB_RS03905 -0.7 -2.8 ribonuclease H compare
AMB_RS24330 -0.7 -2.1 DNA-binding protein compare
AMB_RS23195 -0.7 -1.5 ABC transporter ATP-binding protein compare
AMB_RS02045 -0.7 -3.1 hypothetical protein compare
AMB_RS05605 -0.7 -2.1 hypothetical protein compare
AMB_RS22570 -0.7 -2.1 transcriptional repressor compare
AMB_RS15280 -0.7 -1.2 hypothetical protein compare
AMB_RS21705 -0.7 -3.0 site-specific integrase compare
AMB_RS16960 -0.7 -1.8 DUF2892 domain-containing protein compare
AMB_RS03835 -0.7 -0.7 YicC family protein compare
AMB_RS22765 -0.7 -1.8 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family compare
AMB_RS20835 -0.7 -0.8 DUF2132 domain-containing protein compare
AMB_RS11185 -0.7 -5.2 nitrite/sulfite reductase compare
AMB_RS04325 -0.7 -2.7 TetR/AcrR family transcriptional regulator compare
AMB_RS15620 -0.7 -2.2 RluA family pseudouridine synthase compare
AMB_RS18505 -0.7 -1.5 hypothetical protein compare
AMB_RS11535 -0.7 -1.1 ChbG/HpnK family deacetylase compare
AMB_RS23210 -0.7 -3.8 glycosyl transferase compare
AMB_RS19750 -0.7 -2.9 3-hydroxybutyryl-CoA dehydrogenase compare
AMB_RS24540 -0.7 -1.9 DUF465 domain-containing protein compare
AMB_RS24555 -0.7 -1.2 chemotaxis protein compare
AMB_RS09280 -0.7 -1.9 ArsR family transcriptional regulator compare
AMB_RS01305 -0.7 -3.9 protocatechuate 4,5-dioxygenase subunit alpha compare
AMB_RS04865 -0.7 -1.9 hypothetical protein compare
AMB_RS06155 -0.7 -1.9 hypothetical protein compare
AMB_RS20180 -0.7 -0.7 hypothetical protein compare
AMB_RS18330 -0.7 -2.5 glycosyl transferase family protein compare
AMB_RS12885 -0.7 -1.1 hypothetical protein compare
AMB_RS12665 -0.7 -2.5 M23 family peptidase compare
AMB_RS16425 -0.7 -1.5 hypothetical protein compare
AMB_RS18915 -0.7 -1.8 Flp family type IVb pilin compare
AMB_RS03725 -0.7 -1.8 DNA helicase II compare
AMB_RS08825 -0.7 -1.9 hypothetical protein compare
AMB_RS16705 -0.7 -0.8 LysR family transcriptional regulator compare
AMB_RS10205 -0.7 -3.9 4-hydroxybenzoyl-CoA reductase subunit beta compare
AMB_RS03105 -0.7 -1.6 hypothetical protein compare
AMB_RS17620 -0.7 -3.4 replication-associated recombination protein A compare
AMB_RS04740 -0.7 -1.7 hypothetical protein compare
AMB_RS01995 -0.7 -1.1 DUF1833 domain-containing protein compare
AMB_RS01875 -0.6 -2.0 hypothetical protein compare
AMB_RS02860 -0.6 -1.9 hypothetical protein compare
AMB_RS08320 -0.6 -1.3 Ni,Fe-hydrogenase I large subunit compare
AMB_RS07980 -0.6 -1.1 4Fe-4S ferredoxin compare
AMB_RS03405 -0.6 -0.4 LysR family transcriptional regulator compare
AMB_RS11065 -0.6 -2.2 hypothetical protein compare
AMB_RS21430 -0.6 -0.5 hypothetical protein compare
AMB_RS03215 -0.6 -2.8 alpha/beta hydrolase compare
AMB_RS03655 -0.6 -2.1 hypothetical protein compare
AMB_RS13575 -0.6 -2.5 hypothetical protein compare
AMB_RS17400 -0.6 -2.1 esterase compare
AMB_RS00800 -0.6 -2.6 nucleoside-diphosphate-sugar pyrophosphorylase compare
AMB_RS22085 -0.6 -5.8 cytochrome c oxidase accessory protein CcoG compare
AMB_RS24280 -0.6 -2.9 sel1 repeat family protein compare
AMB_RS19405 -0.6 -1.1 DUF1491 domain-containing protein compare
AMB_RS07745 -0.6 -1.2 disulfide bond formation protein B compare
AMB_RS17455 -0.6 -3.5 histidine kinase compare
AMB_RS12670 -0.6 -1.2 protein-L-isoaspartate O-methyltransferase compare
AMB_RS02915 -0.6 -0.8 hypothetical protein compare
AMB_RS06130 -0.6 -1.6 hypothetical protein compare
AMB_RS07100 -0.6 -1.3 Lrp/AsnC family transcriptional regulator compare
AMB_RS02085 -0.6 -1.9 hypothetical protein compare
AMB_RS08270 -0.6 -2.3 hypothetical protein compare
AMB_RS11775 -0.6 -5.1 glutamate synthase large subunit compare
AMB_RS24700 -0.6 -2.3 hypothetical protein compare
AMB_RS08205 -0.6 -2.6 hypothetical protein compare
AMB_RS01575 -0.6 -0.9 arsenate reductase (glutaredoxin) compare
AMB_RS03135 -0.6 -1.3 NADP-dependent isocitrate dehydrogenase compare
AMB_RS06290 -0.6 -1.9 hypothetical protein compare
AMB_RS13915 -0.6 -3.5 DNA-binding response regulator compare
AMB_RS18100 -0.6 -0.9 DUF2249 domain-containing protein compare
AMB_RS24475 -0.6 -2.2 hypothetical protein compare
AMB_RS23500 -0.6 -1.9 hypothetical protein compare
AMB_RS17995 -0.6 -3.3 hypothetical protein compare
AMB_RS02815 -0.6 -2.4 hypothetical protein compare
AMB_RS15555 -0.6 -1.1 hypothetical protein compare
AMB_RS12410 -0.6 -2.9 excinuclease ABC subunit UvrA compare
AMB_RS20020 -0.6 -0.9 cell division protein ZapE compare
AMB_RS07865 -0.6 -2.7 ATP-dependent chaperone ClpB compare
AMB_RS14635 -0.6 -1.5 hypothetical protein compare
AMB_RS04850 -0.6 -1.5 hypothetical protein compare
AMB_RS02140 -0.6 -2.9 PIG-L family deacetylase compare
AMB_RS16715 -0.6 -1.1 hypothetical protein compare
AMB_RS00710 -0.6 -1.8 cupin domain-containing protein compare
AMB_RS22970 -0.6 -0.8 hypothetical protein compare
AMB_RS08630 -0.6 -1.4 hypothetical protein compare
AMB_RS17735 -0.6 -2.6 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
AMB_RS23920 -0.6 -2.5 transcriptional repressor compare
AMB_RS23065 -0.6 -1.4 hypothetical protein compare
AMB_RS20200 -0.6 -2.3 methyl-accepting chemotaxis protein compare
AMB_RS10265 -0.6 -1.5 hypothetical protein compare
AMB_RS04220 -0.6 -1.3 transcriptional regulator GcvA compare


Specific Phenotypes

None in this experiment

For Magnetospirillum magneticum AMB-1 in magnetic pulldown experiments

For magnetic pulldown Iron across organisms