Experiment set1IT065 for Echinicola vietnamensis KMM 6221, DSM 17526

Compare to:

marine broth with Zinc sulfate heptahydrate 0.5 mM

200 most detrimental genes:

  gene name fitness t score description  
Echvi_3193 +1.3 3.2 hypothetical protein compare
Echvi_2606 +1.1 2.2 hypothetical protein compare
Echvi_2257 +0.9 1.1 hypothetical protein compare
Echvi_1865 +0.9 1.9 hypothetical protein compare
Echvi_1765 +0.9 1.9 Cell wall-associated hydrolases (invasion-associated proteins) compare
Echvi_1764 +0.9 1.7 hypothetical protein compare
Echvi_0727 +0.8 1.2 hypothetical protein compare
Echvi_1607 +0.8 1.0 Acylphosphatases compare
Echvi_2249 +0.8 1.3 hypothetical protein compare
Echvi_0641 +0.8 1.1 Transposase and inactivated derivatives compare
Echvi_3813 +0.8 1.5 Uncharacterized protein conserved in bacteria compare
Echvi_3339 +0.7 1.8 hypothetical protein compare
Echvi_0359 +0.7 1.9 hypothetical protein compare
Echvi_2937 +0.7 2.3 Uncharacterized conserved protein compare
Echvi_3716 +0.7 1.4 rRNA methylases compare
Echvi_0591 +0.7 1.1 Molecular chaperone GrpE (heat shock protein) compare
Echvi_3070 +0.7 1.2 hypothetical protein compare
Echvi_0089 +0.7 1.8 methylmalonyl-CoA epimerase compare
Echvi_1227 +0.6 0.7 hypothetical protein compare
Echvi_4369 +0.6 1.0 hypothetical protein compare
Echvi_0096 +0.6 1.2 Predicted pyrophosphatase compare
Echvi_4465 +0.6 2.2 hypothetical protein compare
Echvi_0718 +0.6 1.5 segregation and condensation protein B compare
Echvi_4184 +0.6 2.5 Predicted transcriptional regulators compare
Echvi_3914 +0.6 5.1 Transcriptional regulators compare
Echvi_1844 +0.6 2.3 3-ketohexose reductase (NADH) (from data) compare
Echvi_2503 +0.6 1.3 hypothetical protein compare
Echvi_0298 +0.6 4.9 gliding-associated putative ABC transporter substrate-binding component GldG compare
Echvi_0622 +0.6 4.0 gliding motility-associated protein GldL compare
Echvi_2208 +0.5 2.2 Truncated hemoglobins compare
Echvi_0949 +0.5 4.6 Predicted glycosyltransferases compare
Echvi_4114 +0.5 1.8 hypothetical protein compare
Echvi_1825 +0.5 0.7 hypothetical protein compare
Echvi_1319 +0.5 4.8 gliding motility-associated lipoprotein GldB compare
Echvi_0299 +0.5 4.5 gliding motility-associated ABC transporter permease protein GldF compare
Echvi_4666 +0.5 1.5 Cold shock proteins compare
Echvi_3224 +0.5 1.9 hypothetical protein compare
Echvi_0623 +0.5 4.7 gliding motility-associated lipoprotein GldK compare
Echvi_0674 +0.5 4.6 hypothetical protein compare
Echvi_0732 +0.5 1.1 hypothetical protein compare
Echvi_1270 +0.5 2.2 DNA polymerase III, alpha subunit (gram-positive type) compare
Echvi_0300 +0.5 3.2 gliding motility-associated ABC transporter ATP-binding subunit GldA compare
Echvi_2586 +0.5 0.8 hypothetical protein compare
Echvi_1315 +0.5 4.2 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase compare
Echvi_1020 +0.5 1.1 hypothetical protein compare
Echvi_1752 +0.5 1.6 hypothetical protein compare
Echvi_4566 +0.5 3.2 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 compare
Echvi_0169 +0.5 4.3 hypothetical protein compare
Echvi_1224 +0.5 4.1 gliding motility-associated lipoprotein GldD compare
Echvi_0952 +0.5 4.0 hypothetical protein compare
Echvi_2346 +0.5 0.8 uncharacterized domain 1 compare
Echvi_0621 +0.5 4.5 gliding motility-associated protein GldM compare
Echvi_0620 +0.5 4.1 gliding motility associated protien GldN compare
Echvi_0436 +0.5 1.1 Bacterial mobilisation protein (MobC). compare
Echvi_4553 +0.5 1.2 hypothetical protein compare
Echvi_1718 +0.5 1.9 hypothetical protein compare
Echvi_4029 +0.5 2.1 Thiol:disulfide interchange protein compare
Echvi_2286 +0.5 2.0 hypothetical protein compare
Echvi_1925 +0.5 1.4 Fe2+-dicitrate sensor, membrane component compare
Echvi_0948 +0.5 4.2 hypothetical protein compare
Echvi_4265 +0.5 1.4 hypothetical protein compare
Echvi_0745 +0.5 3.5 Predicted aminopeptidases compare
Echvi_0953 +0.5 4.2 Periplasmic protein involved in polysaccharide export compare
Echvi_4485 +0.4 1.3 Transposase and inactivated derivatives compare
Echvi_1838 +0.4 0.5 hypothetical protein compare
Echvi_4218 +0.4 1.7 RND family efflux transporter, MFP subunit compare
Echvi_0951 +0.4 3.5 Membrane protein involved in the export of O-antigen and teichoic acid compare
Echvi_4389 +0.4 4.0 hypothetical protein compare
Echvi_2788 +0.4 2.1 hypothetical protein compare
Echvi_2334 +0.4 1.1 Uncharacterized conserved protein compare
Echvi_1950 +0.4 1.1 hypothetical protein compare
Echvi_1157 +0.4 1.8 hypothetical protein compare
Echvi_3485 +0.4 1.8 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 compare
Echvi_0950 +0.4 3.3 hypothetical protein compare
Echvi_0324 +0.4 2.1 Uncharacterized protein involved in methicillin resistance compare
Echvi_0813 +0.4 1.1 hypothetical protein compare
Echvi_1280 +0.4 1.4 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components compare
Echvi_1451 +0.4 1.9 Predicted membrane protein compare
Echvi_1311 +0.4 3.6 gliding motility-associated lipoprotein GldJ compare
Echvi_4391 +0.4 3.9 Nucleoside-diphosphate-sugar epimerases compare
Echvi_4585 +0.4 2.0 Mg-chelatase subunit ChlD compare
Echvi_4595 +0.4 1.0 hypothetical protein compare
Echvi_1693 +0.4 2.2 Uncharacterized protein conserved in bacteria compare
Echvi_2514 +0.4 1.9 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Echvi_4589 +0.4 1.0 MoxR-like ATPases compare
Echvi_4083 +0.4 3.9 hypothetical protein compare
Echvi_3952 +0.4 1.9 NAD-dependent aldehyde dehydrogenases compare
Echvi_3093 +0.4 1.1 hypothetical protein compare
Echvi_0655 +0.4 2.9 hypothetical protein compare
Echvi_0135 +0.4 1.9 Uncharacterized protein conserved in bacteria compare
Echvi_2955 +0.4 1.4 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Echvi_0034 +0.4 1.8 ATP-binding cassette protein, ChvD family compare
Echvi_1728 +0.4 0.8 pseudouridylate synthase I compare
Echvi_2624 +0.4 0.9 hypothetical protein compare
Echvi_1228 +0.4 2.3 Putative homoserine kinase type II (protein kinase fold) compare
Echvi_0527 +0.4 1.7 Predicted endonuclease containing a URI domain compare
Echvi_0940 +0.4 3.1 Glycosyltransferase compare
Echvi_0705 +0.4 2.5 hypothetical protein compare
Echvi_1119 +0.4 1.3 hypothetical protein compare
Echvi_4556 +0.4 2.2 hypothetical protein compare
Echvi_3680 +0.4 1.8 Predicted transcriptional regulators compare
Echvi_4640 +0.4 0.5 hypothetical protein compare
Echvi_3472 +0.4 2.0 Universal stress protein UspA and related nucleotide-binding proteins compare
Echvi_1646 +0.4 1.7 hypothetical protein compare
Echvi_1795 +0.4 1.7 hypothetical protein compare
Echvi_3196 +0.4 2.1 Copper chaperone compare
Echvi_0941 +0.4 3.3 Glycosyltransferase compare
Echvi_2251 +0.4 2.1 hypothetical protein compare
Echvi_2393 +0.4 1.0 uracil-DNA glycosylase compare
Echvi_0947 +0.4 3.1 Glycosyltransferase compare
Echvi_0551 +0.4 1.7 hypothetical protein compare
Echvi_2735 +0.4 1.3 hypothetical protein compare
Echvi_3209 +0.4 2.1 Predicted membrane protein compare
Echvi_1769 +0.4 1.4 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) compare
Echvi_2644 +0.4 1.7 hypothetical protein compare
Echvi_4573 +0.4 2.8 Glycosyltransferases, probably involved in cell wall biogenesis compare
Echvi_0582 +0.4 1.3 hypothetical protein compare
Echvi_1033 +0.4 1.1 hypothetical protein compare
Echvi_4193 +0.4 1.1 Transposase and inactivated derivatives compare
Echvi_2424 +0.4 1.5 hypothetical protein compare
Echvi_0822 +0.4 1.4 Acetyltransferases compare
Echvi_2546 +0.4 1.0 hypothetical protein compare
Echvi_1277 +0.4 1.1 Acetyltransferases, including N-acetylases of ribosomal proteins compare
Echvi_4034 +0.4 2.2 hypothetical protein compare
Echvi_3451 +0.3 0.8 hypothetical protein compare
Echvi_2728 +0.3 1.4 Plant Basic Secretory Protein. compare
Echvi_0648 +0.3 1.6 hypothetical protein compare
Echvi_3370 +0.3 1.0 Predicted membrane protein compare
Echvi_1821 +0.3 2.6 hypothetical protein compare
Echvi_1525 +0.3 2.4 hypothetical protein compare
Echvi_3243 +0.3 0.8 hypothetical protein compare
Echvi_0521 +0.3 1.6 hypothetical protein compare
Echvi_4327 +0.3 1.3 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 compare
Echvi_4264 +0.3 1.8 hypothetical protein compare
Echvi_3744 +0.3 1.2 hypothetical protein compare
Echvi_3310 +0.3 1.1 Predicted Fe-S-cluster oxidoreductase compare
Echvi_3517 +0.3 1.7 hypothetical protein compare
Echvi_1487 +0.3 2.9 hypothetical protein compare
Echvi_2649 +0.3 2.0 Predicted transcriptional regulators compare
Echvi_1726 +0.3 1.8 hypothetical protein compare
Echvi_2517 +0.3 1.0 phosphoribosyl-ATP pyrophosphohydrolase compare
Echvi_1488 +0.3 1.8 hypothetical protein compare
Echvi_2521 +0.3 1.9 Glucose/sorbosone dehydrogenases compare
Echvi_4001 +0.3 1.8 Uncharacterized protein conserved in bacteria compare
Echvi_1222 +0.3 2.0 Predicted beta-xylosidase compare
Echvi_0378 +0.3 1.0 hypothetical protein compare
Echvi_2720 +0.3 1.7 hypothetical protein compare
Echvi_2561 +0.3 1.6 Acyl-CoA hydrolase compare
Echvi_0176 +0.3 2.4 conserved repeat domain compare
Echvi_0136 +0.3 1.3 Membrane-bound serine protease (ClpP class) compare
Echvi_0617 +0.3 2.9 hypothetical protein compare
Echvi_2778 +0.3 0.9 hypothetical protein compare
Echvi_0080 +0.3 2.4 L-asparaginases, type I compare
Echvi_0721 +0.3 0.8 Uncharacterized protein conserved in bacteria compare
Echvi_2570 +0.3 1.6 Protein of unknown function (DUF664). compare
Echvi_1343 +0.3 0.5 Predicted endonuclease containing a URI domain compare
Echvi_1721 +0.3 1.8 hypothetical protein compare
Echvi_2310 +0.3 1.1 conserved hypothetical protein YidD compare
Echvi_3088 +0.3 1.6 Lactoylglutathione lyase and related lyases compare
Echvi_1037 +0.3 1.6 Protein of unknown function (DUF2752). compare
Echvi_1070 +0.3 1.1 S23 ribosomal protein. compare
Echvi_3020 +0.3 1.2 hypothetical protein compare
Echvi_2232 +0.3 0.8 Uncharacterized small membrane protein compare
Echvi_0333 +0.3 2.7 Bacteroidetes-specific putative membrane protein compare
Echvi_4403 +0.3 1.6 Predicted endonuclease containing a URI domain compare
Echvi_0569 +0.3 1.3 hypothetical protein compare
Echvi_1283 +0.3 0.7 Predicted periplasmic lipoprotein (DUF2291). compare
Echvi_1023 +0.3 0.9 hypothetical protein compare
Echvi_2236 +0.3 1.4 hypothetical protein compare
Echvi_0697 +0.3 2.1 Aldose 1-epimerase (EC 5.1.3.3) (from data) compare
Echvi_3341 +0.3 1.2 Predicted membrane protein compare
Echvi_4582 +0.3 0.7 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Echvi_1988 +0.3 1.1 Uncharacterized conserved protein compare
Echvi_2068 +0.3 2.0 hypothetical protein compare
Echvi_0848 +0.3 1.7 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family compare
Echvi_4257 +0.3 2.1 SusD family. compare
Echvi_1855 +0.3 1.6 Beta-glucanase/Beta-glucan synthetase compare
Echvi_1999 +0.3 1.1 hypothetical protein compare
Echvi_1114 +0.3 1.9 hypothetical protein compare
Echvi_4210 +0.3 2.1 RND family efflux transporter, MFP subunit compare
Echvi_3381 +0.3 2.8 Pregnancy-associated plasma protein-A. compare
Echvi_4000 +0.3 1.4 Metal-dependent hydrolase compare
Echvi_4308 +0.3 0.6 hypothetical protein compare
Echvi_2084 +0.3 2.6 Uncharacterized protein conserved in bacteria compare
Echvi_3165 +0.3 1.7 Predicted exonuclease of the beta-lactamase fold involved in RNA processing compare
Echvi_2703 +0.3 1.3 MerC mercury resistance protein. compare
Echvi_3298 +0.3 2.0 Polyketide cyclase / dehydrase and lipid transport. compare
Echvi_1900 +0.3 1.0 nitrite reductase [NAD(P)H], small subunit compare
Echvi_0197 +0.3 0.9 hypothetical protein compare
Echvi_3721 +0.3 1.2 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
Echvi_3361 +0.3 1.5 Predicted esterase of the alpha-beta hydrolase superfamily compare
Echvi_2408 +0.3 1.4 Nucleotidyltransferase/DNA polymerase involved in DNA repair compare
Echvi_3489 +0.3 1.8 Predicted periplasmic protein (DUF2233). compare
Echvi_2958 +0.3 2.0 amino acid/peptide transporter (Peptide:H+ symporter), bacterial compare
Echvi_2338 +0.3 1.6 Cytochrome bd-type quinol oxidase, subunit 2 compare
Echvi_0892 +0.3 1.0 Predicted transcriptional regulators compare
Echvi_2331 +0.3 1.9 Periplasmic protein involved in polysaccharide export compare
Echvi_2947 +0.3 1.3 hypothetical protein compare
Echvi_0203 +0.3 1.5 Transcriptional regulator compare
Echvi_0553 +0.3 1.7 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Echinicola vietnamensis KMM 6221, DSM 17526 in stress experiments

For stress Zinc sulfate heptahydrate across organisms