Experiment set1IT064 for Variovorax sp. OAS795

Compare to:

Sodium L-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS08015 -7.5 -5.1 LysR substrate-binding domain-containing protein compare
ABID97_RS15375 -7.0 -6.6 DUF934 domain-containing protein compare
ABID97_RS10815 -6.8 -15.2 phosphoenolpyruvate synthase compare
ABID97_RS16595 -6.6 -5.5 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS01565 -6.6 -10.1 DNA starvation/stationary phase protection protein compare
ABID97_RS06575 -6.5 -6.3 trehalose-phosphatase compare
ABID97_RS23225 -6.2 -14.9 glutamate synthase-related protein compare
ABID97_RS20615 -6.0 -8.9 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS08010 -5.9 -8.1 alpha-hydroxy acid oxidase compare
ABID97_RS15380 -5.8 -10.4 nitrite/sulfite reductase compare
ABID97_RS08220 -5.8 -8.8 phosphoenolpyruvate carboxylase compare
ABID97_RS16600 -5.7 -8.7 CysB family HTH-type transcriptional regulator compare
ABID97_RS02290 -4.9 -16.5 sensor histidine kinase N-terminal domain-containing protein compare
ABID97_RS25080 -4.8 -18.4 MFS transporter compare
ABID97_RS14105 -4.8 -3.3 dihydrolipoyllysine-residue acetyltransferase compare
ABID97_RS05260 -4.7 -2.0 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS05250 -4.7 -4.5 anthranilate synthase component I compare
ABID97_RS10885 -4.6 -6.3 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS02285 -4.6 -17.7 response regulator transcription factor compare
ABID97_RS14095 -4.4 -12.1 PAS domain S-box protein compare
ABID97_RS08425 -4.4 -4.3 tryptophan synthase subunit alpha compare
ABID97_RS09180 -4.3 -4.2 DNA polymerase I compare
ABID97_RS07405 -4.3 -10.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS23425 -4.3 -2.9 tRNA-Pro compare
ABID97_RS07775 -4.2 -5.2 phosphoribosylglycinamide formyltransferase compare
ABID97_RS14100 -4.2 -8.5 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABID97_RS25015 -4.1 -2.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS23230 -4.1 -13.1 transposase compare
ABID97_RS14115 -4.1 -6.2 dihydrolipoyl dehydrogenase compare
ABID97_RS13990 -4.1 -2.8 amino acid aminotransferase compare
ABID97_RS25525 -4.0 -4.9 LacI family DNA-binding transcriptional regulator compare
ABID97_RS06345 -3.9 -2.7 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS07430 -3.9 -8.3 pantoate--beta-alanine ligase compare
ABID97_RS07000 -3.8 -11.0 threonine ammonia-lyase, biosynthetic compare
ABID97_RS13860 -3.8 -5.4 hypothetical protein compare
ABID97_RS03680 -3.8 -8.3 lysophospholipid transporter LplT compare
ABID97_RS07435 -3.7 -5.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS15370 -3.7 -13.8 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS08775 -3.7 -2.5 ribosome small subunit-dependent GTPase A compare
ABID97_RS12180 -3.6 -2.5 hypothetical protein compare
ABID97_RS23220 -3.5 -1.9 glutamate synthase subunit beta compare
ABID97_RS07500 -3.5 -2.4 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS05275 -3.4 -2.3 anthranilate phosphoribosyltransferase compare
ABID97_RS23915 -3.4 -4.6 heme o synthase compare
ABID97_RS15665 -3.4 -9.2 [protein-PII] uridylyltransferase compare
ABID97_RS02600 -3.3 -4.6 homoserine O-acetyltransferase compare
ABID97_RS15360 -3.3 -9.2 GTP-binding protein compare
ABID97_RS23455 -3.3 -3.2 hypothetical protein compare
ABID97_RS16535 -3.2 -8.8 arginine/lysine/ornithine decarboxylase compare
ABID97_RS15465 -3.2 -15.8 sulfate ABC transporter substrate-binding protein compare
ABID97_RS04760 -3.2 -2.2 SPOR domain-containing protein compare
ABID97_RS17635 -3.2 -5.7 presqualene diphosphate synthase HpnD compare
ABID97_RS14090 -3.2 -1.9 response regulator transcription factor compare
ABID97_RS03805 -3.0 -1.8 ATP-binding protein compare
ABID97_RS23450 -3.0 -4.1 MBOAT family protein compare
ABID97_RS03800 -2.9 -2.0 O-antigen ligase family protein compare
ABID97_RS21150 -2.8 -7.3 FAD-dependent oxidoreductase compare
ABID97_RS05280 -2.7 -1.9 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS28990 -2.7 -7.6 aspartate 1-decarboxylase compare
ABID97_RS03910 -2.7 -1.8 orotate phosphoribosyltransferase compare
ABID97_RS15365 -2.7 -6.0 sulfate adenylyltransferase subunit CysD compare
ABID97_RS08435 -2.7 -1.8 phosphoribosylanthranilate isomerase compare
ABID97_RS05750 -2.7 -2.6 glycosyltransferase compare
ABID97_RS05765 -2.6 -1.8 UDP-glucose 4-epimerase GalE compare
ABID97_RS06450 -2.6 -1.8 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS05755 -2.6 -2.5 glycosyltransferase compare
ABID97_RS06460 -2.6 -1.8 sigma 54-interacting transcriptional regulator compare
ABID97_RS04500 -2.5 -1.7 HPr(Ser) kinase/phosphatase compare
ABID97_RS04885 -2.5 -14.5 YbdK family carboxylate-amine ligase compare
ABID97_RS14160 -2.5 -7.5 cell division protein ZapE compare
ABID97_RS15490 -2.4 -9.0 FMNH2-dependent alkanesulfonate monooxygenase compare
ABID97_RS17850 -2.4 -1.3 tetratricopeptide repeat protein compare
ABID97_RS00255 -2.4 -15.3 type IV pilus twitching motility protein PilT compare
ABID97_RS05365 -2.4 -4.4 DUF4390 domain-containing protein compare
ABID97_RS24170 -2.4 -6.8 ATP-binding protein compare
ABID97_RS24045 -2.4 -3.4 type II toxin-antitoxin system prevent-host-death family antitoxin compare
ABID97_RS07415 -2.3 -13.3 quinolinate synthase NadA compare
ABID97_RS09620 -2.3 -4.0 hypothetical protein compare
ABID97_RS19375 -2.3 -4.9 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
ABID97_RS12140 -2.3 -8.2 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS02115 -2.3 -11.0 PilW family protein compare
ABID97_RS04890 -2.2 -9.4 cation:proton antiporter compare
ABID97_RS13870 -2.2 -5.6 hypothetical protein compare
ABID97_RS02120 -2.2 -13.4 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS07410 -2.1 -4.3 carboxylating nicotinate-nucleotide diphosphorylase compare
ABID97_RS05370 -2.1 -5.5 ATP-binding protein compare
ABID97_RS13865 -2.1 -5.3 hypothetical protein compare
ABID97_RS23440 -2.1 -10.7 A24 family peptidase compare
ABID97_RS02125 -2.1 -17.7 PilC/PilY family type IV pilus protein compare
ABID97_RS02110 -2.1 -13.1 type IV pilus modification protein PilV compare
ABID97_RS16750 -2.1 -11.7 Rid family hydrolase compare
ABID97_RS08480 -2.0 -1.4 citrate synthase compare
ABID97_RS05670 -2.0 -1.4 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS08445 -2.0 -8.6 FimV/HubP family polar landmark protein compare
ABID97_RS17590 -2.0 -10.9 endopeptidase La compare
ABID97_RS08430 -2.0 -1.3 tryptophan synthase subunit beta compare
ABID97_RS14625 -1.9 -7.1 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS14920 -1.9 -10.5 IclR family transcriptional regulator compare
ABID97_RS02135 -1.9 -6.4 GspH/FimT family pseudopilin compare
ABID97_RS02455 -1.9 -5.1 nucleotidyltransferase family protein compare
ABID97_RS09935 -1.9 -7.6 hypothetical protein compare
ABID97_RS24705 -1.9 -5.6 response regulator compare
ABID97_RS20520 -1.9 -2.4 polyribonucleotide nucleotidyltransferase compare
ABID97_RS23435 -1.9 -11.7 type II secretion system F family protein compare
ABID97_RS08710 -1.9 -6.9 polynucleotide adenylyltransferase PcnB compare
ABID97_RS15995 -1.9 -7.4 PilZ domain-containing protein compare
ABID97_RS09940 -1.8 -6.0 nitrogen regulation protein NR(II) compare
ABID97_RS01650 -1.8 -1.2 orotidine-5'-phosphate decarboxylase compare
ABID97_RS23430 -1.8 -11.4 type IV-A pilus assembly ATPase PilB compare
ABID97_RS28635 -1.8 -2.3 IclR family transcriptional regulator compare
ABID97_RS06520 -1.7 -1.6 SAM-dependent methyltransferase compare
ABID97_RS15100 -1.7 -2.1 helix-turn-helix transcriptional regulator compare
ABID97_RS03915 -1.7 -6.6 DUF4124 domain-containing protein compare
ABID97_RS01840 -1.7 -9.7 DUF1631 family protein compare
ABID97_RS16690 -1.7 -5.8 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS07440 -1.7 -10.7 L-aspartate oxidase compare
ABID97_RS24730 -1.7 -2.7 Fis family transcriptional regulator compare
ABID97_RS12460 -1.7 -3.1 acetoacetyl-CoA reductase compare
ABID97_RS14975 -1.7 -5.1 hypothetical protein compare
ABID97_RS20265 -1.7 -3.1 site-specific tyrosine recombinase XerD compare
ABID97_RS27720 -1.7 -1.7 fumarate reductase/succinate dehydrogenase flavoprotein subunit compare
ABID97_RS17970 -1.6 -7.5 protein TolQ compare
ABID97_RS15470 -1.6 -3.3 NADPH-dependent FMN reductase compare
ABID97_RS03110 -1.6 -5.5 helix-turn-helix transcriptional regulator compare
ABID97_RS25085 -1.6 -2.8 2-hydroxychromene-2-carboxylate isomerase compare
ABID97_RS15480 -1.6 -6.0 sulfonate ABC transporter substrate-binding protein compare
ABID97_RS03125 -1.6 -8.6 benzoyl-CoA 2,3-epoxidase subunit BoxA compare
ABID97_RS18205 -1.6 -3.1 XRE family transcriptional regulator compare
ABID97_RS09595 -1.6 -1.4 Arc family DNA-binding protein compare
ABID97_RS19065 -1.5 -6.0 GntR family transcriptional regulator compare
ABID97_RS27535 -1.5 -1.6 enoyl-CoA hydratase/isomerase family protein compare
ABID97_RS06175 -1.5 -11.2 STAS domain-containing protein compare
ABID97_RS19385 -1.5 -5.0 short-chain fatty acyl-CoA regulator family protein compare
ABID97_RS02130 -1.5 -8.7 type IV pilin protein compare
ABID97_RS01825 -1.5 -11.5 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS02145 -1.5 -6.8 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS27450 -1.5 -1.2 biotin-independent malonate decarboxylase subunit gamma compare
ABID97_RS22705 -1.5 -8.5 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS26160 -1.5 -1.3 nuclear transport factor 2 family protein compare
ABID97_RS10295 -1.5 -1.5 winged helix-turn-helix transcriptional regulator compare
ABID97_RS20610 -1.5 -6.7 DNA-binding protein YbiB compare
ABID97_RS25900 -1.4 -2.3 ABC transporter permease compare
ABID97_RS27370 -1.4 -1.3 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
ABID97_RS23275 -1.4 -7.7 type 4a pilus biogenesis protein PilO compare
ABID97_RS16985 -1.4 -3.5 transcriptional repressor LexA compare
ABID97_RS10720 -1.4 -5.2 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABID97_RS16470 -1.4 -1.8 translational GTPase TypA compare
ABID97_RS28290 -1.4 -1.1 hypothetical protein compare
ABID97_RS06160 -1.4 -6.0 GTP-binding protein compare
ABID97_RS02140 -1.4 -5.8 sugar transferase compare
ABID97_RS23650 -1.4 -10.2 serine/threonine-protein kinase compare
ABID97_RS23380 -1.3 -7.9 lytic transglycosylase domain-containing protein compare
ABID97_RS23940 -1.3 -6.4 cytochrome c oxidase subunit 3 compare
ABID97_RS24920 -1.3 -1.3 Holliday junction branch migration protein RuvA compare
ABID97_RS12415 -1.3 -9.3 class I poly(R)-hydroxyalkanoic acid synthase compare
ABID97_RS19955 -1.3 -1.4 glycerol-3-phosphate dehydrogenase compare
ABID97_RS02210 -1.3 -7.5 pilin compare
ABID97_RS06415 -1.3 -7.1 sigma-54 dependent transcriptional regulator compare
ABID97_RS06060 -1.3 -1.4 hypothetical protein compare
ABID97_RS02460 -1.2 -9.3 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS07630 -1.2 -2.5 cytochrome o ubiquinol oxidase subunit III compare
ABID97_RS24370 -1.2 -2.9 DUF1841 family protein compare
ABID97_RS18495 -1.2 -1.3 DUF2889 domain-containing protein compare
ABID97_RS03115 -1.2 -4.5 2,3-epoxybenzoyl-CoA dihydrolase compare
ABID97_RS02605 -1.2 -7.3 TMEM165/GDT1 family protein compare
ABID97_RS13450 -1.2 -2.5 TetR/AcrR family transcriptional regulator compare
ABID97_RS03630 -1.2 -3.4 P-II family nitrogen regulator compare
ABID97_RS17425 -1.2 -8.6 TonB-dependent receptor compare
ABID97_RS24690 -1.2 -6.4 methyl-accepting chemotaxis protein compare
ABID97_RS04610 -1.2 -6.3 potassium transporter Kup compare
ABID97_RS26990 -1.2 -1.5 ornithine carbamoyltransferase compare
ABID97_RS15585 -1.2 -2.6 sulfate ABC transporter ATP-binding protein compare
ABID97_RS19040 -1.2 -1.4 isocitrate/isopropylmalate dehydrogenase family protein compare
ABID97_RS11700 -1.2 -4.2 GntR family transcriptional regulator compare
ABID97_RS08440 -1.2 -4.1 tRNA pseudouridine(38-40) synthase TruA compare
ABID97_RS23280 -1.2 -4.9 PilN domain-containing protein compare
ABID97_RS02200 -1.2 -9.6 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABID97_RS14890 -1.2 -3.8 acetolactate synthase small subunit compare
ABID97_RS12590 -1.2 -1.3 triphosphoribosyl-dephospho-CoA synthase compare
ABID97_RS25345 -1.2 -5.4 transporter associated domain-containing protein compare
ABID97_RS23270 -1.2 -4.8 pilus assembly protein PilP compare
ABID97_RS14200 -1.2 -4.8 pseudouridine synthase compare
ABID97_RS29270 -1.2 -0.9 cytochrome b561 domain-containing protein compare
ABID97_RS16745 -1.2 -5.5 class I SAM-dependent methyltransferase compare
ABID97_RS14505 -1.1 -9.0 hypothetical protein compare
ABID97_RS17640 -1.1 -2.3 hydroxysqualene dehydroxylase HpnE compare
ABID97_RS10250 -1.1 -2.5 Rieske 2Fe-2S domain-containing protein compare
ABID97_RS16695 -1.1 -7.4 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS17225 -1.1 -6.7 polyhydroxyalkanoate synthesis repressor PhaR compare
ABID97_RS09275 -1.1 -4.1 polyprenyl synthetase family protein compare
ABID97_RS08360 -1.1 -6.8 DUF4845 domain-containing protein compare
ABID97_RS04960 -1.1 -0.9 ATP-binding protein compare
ABID97_RS06315 -1.1 -7.9 YqiA/YcfP family alpha/beta fold hydrolase compare
ABID97_RS10705 -1.1 -2.7 H-NS histone family protein compare
ABID97_RS08250 -1.1 -5.6 RluA family pseudouridine synthase compare
ABID97_RS10695 -1.1 -5.1 YbhB/YbcL family Raf kinase inhibitor-like protein compare
ABID97_RS09630 -1.1 -2.4 hypothetical protein compare
ABID97_RS14950 -1.1 -2.2 IclR family transcriptional regulator C-terminal domain-containing protein compare
ABID97_RS01725 -1.1 -1.1 META domain-containing protein compare
ABID97_RS03720 -1.1 -1.2 4-hydroxy-2-oxoheptanedioate aldolase compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Sodium L-Lactate in Variovorax sp. OAS795

For carbon source Sodium L-Lactate across organisms