Experiment set1IT064 for Pontibacter actiniarum KMM 6156, DSM 19842

Compare to:

marine broth with Sodium nitrite 20 mM

200 most detrimental genes:

  gene name fitness t score description  
CA264_12410 +2.3 1.9 serine acetyltransferase compare
CA264_15000 +1.5 1.1 single-stranded DNA-binding protein compare
CA264_19555 +1.3 8.5 GNAT family N-acetyltransferase compare
CA264_10920 +1.1 7.4 helix-turn-helix-type transcriptional regulator compare
CA264_06355 +1.1 8.2 ergothioneine biosynthesis protein EgtB compare
CA264_01390 +1.0 7.9 iron ABC transporter permease compare
CA264_12150 +1.0 3.4 hypothetical protein compare
CA264_02025 +1.0 5.7 nitroreductase compare
CA264_12440 +1.0 1.9 methionyl-tRNA formyltransferase compare
CA264_16100 +1.0 1.3 hypothetical protein compare
CA264_15745 +0.9 1.4 tRNA-Arg compare
CA264_01385 +0.9 7.2 iron ABC transporter substrate-binding protein compare
CA264_19545 +0.9 5.3 oxidoreductase compare
CA264_12155 +0.9 2.4 histidine phosphatase family protein compare
CA264_19540 +0.9 6.2 hypothetical protein compare
CA264_07245 +0.9 5.4 hypothetical protein compare
CA264_18945 +0.8 2.1 hypothetical protein compare
CA264_18345 +0.8 1.5 hypothetical protein compare
CA264_21225 +0.8 1.5 hypothetical protein compare
CA264_08075 +0.8 3.2 gliding motility-associated ABC transporter permease subunit GldF compare
CA264_01985 +0.8 1.3 tRNA-Lys compare
CA264_06070 +0.8 1.3 kinase compare
CA264_18135 +0.8 4.4 ABC transporter ATP-binding protein compare
CA264_19150 +0.7 5.8 TonB dependent receptor compare
CA264_19875 +0.7 1.3 RNA methyltransferase compare
CA264_03605 +0.7 1.2 DNA-binding protein compare
CA264_06095 +0.7 2.1 hypothetical protein compare
CA264_15165 +0.7 3.4 flagellar motor protein MotA compare
CA264_13015 +0.7 5.3 sensor histidine kinase compare
CA264_16360 +0.6 3.7 gliding motility protein GldM compare
CA264_20635 +0.6 1.1 thioredoxin family protein compare
CA264_00170 +0.6 2.3 ATP:cob(I)alamin adenosyltransferase compare
CA264_18970 +0.6 2.8 hypothetical protein compare
CA264_18245 +0.6 1.7 NADH-quinone oxidoreductase subunit A compare
CA264_10305 +0.6 1.0 hypothetical protein compare
CA264_10005 +0.6 1.7 hypothetical protein compare
CA264_14190 +0.6 2.5 hypothetical protein compare
CA264_17235 +0.6 3.9 gliding motility lipoprotein GldJ compare
CA264_19005 +0.6 4.9 SusC/RagA family TonB-linked outer membrane protein compare
CA264_10980 +0.6 2.2 peptidase M23 compare
CA264_10955 +0.6 1.0 phenylacetate-CoA oxygenase subunit PaaJ compare
CA264_08080 +0.5 2.2 gliding motility-associated ABC transporter ATP-binding subunit GldA compare
CA264_20465 +0.5 0.6 aspartate carbamoyltransferase compare
CA264_02030 +0.5 2.9 hypothetical protein compare
CA264_14350 +0.5 3.3 hemolysin compare
CA264_02685 +0.5 2.4 hypothetical protein compare
CA264_16175 +0.5 1.9 hypothetical protein compare
CA264_11715 +0.5 1.6 hypothetical protein compare
CA264_06700 +0.5 2.9 hypothetical protein compare
CA264_20570 +0.5 1.3 inorganic pyrophosphatase compare
CA264_02180 +0.5 0.7 response regulator compare
CA264_14420 +0.5 2.0 hypothetical protein compare
CA264_20285 +0.5 0.9 hypothetical protein compare
CA264_16370 +0.5 3.0 gliding motility lipoprotein GldK compare
CA264_16130 +0.5 2.1 TetR family transcriptional regulator compare
CA264_08105 +0.5 2.8 NupC/NupG family nucleoside CNT transporter compare
CA264_06925 +0.5 1.7 acetolactate synthase small subunit compare
CA264_03835 +0.5 1.5 hypothetical protein compare
CA264_18030 +0.5 3.1 cation transporter compare
CA264_15170 +0.5 2.2 biopolymer transporter ExbD compare
CA264_09735 +0.5 1.0 5-hydroxyisourate hydrolase compare
CA264_10910 +0.5 3.6 phytoene dehydrogenase compare
CA264_08780 +0.5 3.3 hypothetical protein compare
CA264_06250 +0.5 1.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
CA264_13480 +0.5 2.2 hypothetical protein compare
CA264_06845 +0.5 1.2 hypothetical protein compare
CA264_21045 +0.5 1.8 hypothetical protein compare
CA264_12935 +0.5 2.5 serine hydrolase compare
CA264_05930 +0.5 1.4 glyoxalase compare
CA264_21040 +0.4 1.1 transcriptional regulator compare
CA264_06330 +0.4 1.1 cation:proton antiporter compare
CA264_07645 +0.4 2.0 hypothetical protein compare
CA264_17565 +0.4 0.8 hypothetical protein compare
CA264_19215 +0.4 2.0 RNA polymerase subunit sigma compare
CA264_11620 +0.4 3.6 hypothetical protein compare
CA264_09545 +0.4 1.1 hypothetical protein compare
CA264_06530 +0.4 1.5 peptidase compare
CA264_20120 +0.4 1.3 hypothetical protein compare
CA264_06445 +0.4 2.0 NUDIX hydrolase compare
CA264_03300 +0.4 0.8 hypothetical protein compare
CA264_14805 +0.4 0.7 DNA-binding protein compare
CA264_01090 +0.4 1.2 hypothetical protein compare
CA264_03385 +0.4 2.0 hypothetical protein compare
CA264_13870 +0.4 1.8 hypothetical protein compare
CA264_20520 +0.4 1.1 hypothetical protein compare
CA264_18640 +0.4 0.8 ATPase compare
CA264_20795 +0.4 2.0 hypothetical protein compare
CA264_18215 +0.4 1.6 hypothetical protein compare
CA264_09185 +0.4 2.0 hypothetical protein compare
CA264_02565 +0.4 1.3 hypothetical protein compare
CA264_14930 +0.4 1.2 hypothetical protein compare
CA264_06335 +0.4 1.1 Na+/H+ antiporter subunit G compare
CA264_01935 +0.4 2.0 DNA-binding response regulator compare
CA264_14675 +0.4 1.8 hypothetical protein compare
CA264_08945 +0.4 1.6 type 1 glutamine amidotransferase domain-containing protein compare
CA264_07485 +0.4 1.7 septal ring lytic transglycosylase RlpA family lipoprotein compare
CA264_13070 +0.4 2.9 ribonuclease bn compare
CA264_17685 +0.4 2.2 hypothetical protein compare
CA264_19010 +0.4 3.3 SusD/RagB family nutrient-binding outer membrane lipoprotein compare
CA264_06835 +0.4 2.5 copper ABC transporter ATP-binding protein compare
CA264_04820 +0.4 2.4 deoxyhypusine synthase compare
CA264_02570 +0.4 1.6 hypothetical protein compare
CA264_20760 +0.4 1.9 hypothetical protein compare
CA264_16590 +0.4 0.9 site-2 protease family protein compare
CA264_19045 +0.4 1.2 acyl-CoA dehydrogenase compare
CA264_12600 +0.4 2.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
CA264_01425 +0.4 3.0 RelA/SpoT family protein compare
CA264_12165 +0.4 2.2 hypothetical protein compare
CA264_08510 +0.4 1.5 thiol oxidoreductase compare
CA264_16365 +0.4 1.6 gliding motility protein GldL compare
CA264_10715 +0.4 1.2 hypothetical protein compare
CA264_14360 +0.4 1.7 gamma carbonic anhydrase family protein compare
CA264_16425 +0.4 2.0 hypothetical protein compare
CA264_01225 +0.4 1.9 X-Pro dipeptidyl-peptidase compare
CA264_17095 +0.4 0.5 FeoB-associated Cys-rich membrane protein compare
CA264_04095 +0.4 1.9 GAF domain-containing protein compare
CA264_18670 +0.4 1.9 cold-shock protein compare
CA264_06375 +0.4 2.0 hypothetical protein compare
CA264_01485 +0.4 1.8 hypothetical protein compare
CA264_08435 +0.4 1.3 transcription elongation factor GreAB compare
CA264_16985 +0.3 0.6 hypothetical protein compare
CA264_17905 +0.3 2.6 UDP-glucose 4-epimerase GalE compare
CA264_11990 +0.3 1.6 hypothetical protein compare
CA264_10610 +0.3 1.5 tRNA-Pro compare
CA264_01850 +0.3 1.3 hypothetical protein compare
CA264_15010 +0.3 1.7 gliding motility lipoprotein GldD compare
CA264_10275 +0.3 1.2 transcriptional regulator compare
CA264_09800 +0.3 2.3 DNA-binding response regulator compare
CA264_21385 +0.3 1.3 hypothetical protein compare
CA264_04540 +0.3 1.7 PspC family transcriptional regulator compare
CA264_20505 +0.3 1.2 hypothetical protein compare
CA264_08665 +0.3 1.6 N-acetylmuramoyl-L-alanine amidase compare
CA264_12160 +0.3 0.9 transcriptional regulator compare
CA264_03620 +0.3 2.3 acyl-CoA desaturase compare
CA264_12780 +0.3 1.7 DUF3221 domain-containing protein compare
CA264_13145 +0.3 1.7 hypothetical protein compare
CA264_20935 +0.3 0.6 transcriptional regulator compare
CA264_02035 +0.3 2.1 hypothetical protein compare
CA264_00560 +0.3 1.7 hypothetical protein compare
CA264_07570 +0.3 1.9 hypothetical protein compare
CA264_16710 +0.3 0.9 transcriptional regulator compare
CA264_21030 +0.3 1.7 hypothetical protein compare
CA264_10905 +0.3 2.5 phytoene synthase compare
CA264_09730 +0.3 1.2 hypothetical protein compare
CA264_21255 +0.3 1.3 hypothetical protein compare
CA264_11995 +0.3 0.8 hypothetical protein compare
CA264_01595 +0.3 1.7 hypothetical protein compare
CA264_17320 +0.3 2.8 hypothetical protein compare
CA264_12735 +0.3 1.5 hypothetical protein compare
CA264_00265 +0.3 1.4 YigZ family protein compare
CA264_01545 +0.3 0.8 3-deoxy-7-phosphoheptulonate synthase compare
CA264_03330 +0.3 0.8 peptide-methionine (R)-S-oxide reductase compare
CA264_06610 +0.3 0.9 iron-dependent repressor compare
CA264_18060 +0.3 2.1 hypothetical protein compare
CA264_14590 +0.3 2.1 phosphoribosylformylglycinamidine synthase I compare
CA264_04900 +0.3 1.2 bacillithiol biosynthesis deacetylase BshB1 compare
CA264_12345 +0.3 1.3 lipid carrier--UDP-N-acetylgalactosaminyltransferase compare
CA264_14580 +0.3 1.2 hypothetical protein compare
CA264_13420 +0.3 1.1 hypothetical protein compare
CA264_05535 +0.3 2.3 hypothetical protein compare
CA264_13315 +0.3 2.2 N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA compare
CA264_08975 +0.3 1.2 hypothetical protein compare
CA264_00250 +0.3 2.1 hypothetical protein compare
CA264_12370 +0.3 2.4 hypothetical protein compare
CA264_20355 +0.3 0.9 DUF421 domain-containing protein compare
CA264_02910 +0.3 1.2 hypothetical protein compare
CA264_10070 +0.3 1.4 hypothetical protein compare
CA264_07975 +0.3 2.2 pseudaminic acid synthase compare
CA264_06540 +0.3 2.0 hypothetical protein compare
CA264_16575 +0.3 1.1 hypothetical protein compare
CA264_09270 +0.3 1.5 tRNA-specific adenosine deaminase compare
CA264_16465 +0.3 1.6 hypothetical protein compare
CA264_15760 +0.3 1.3 hypothetical protein compare
CA264_12910 +0.3 1.0 acyl-CoA-binding protein compare
CA264_03990 +0.3 1.9 alkyl hydroperoxide reductase compare
CA264_20660 +0.3 1.4 methylmalonyl Co-A mutase-associated GTPase MeaB compare
CA264_10695 +0.3 0.8 anti-sigma regulatory factor compare
CA264_08070 +0.3 1.5 gliding motility-associated ABC transporter substrate-binding protein GldG compare
CA264_16570 +0.3 1.4 hypothetical protein compare
CA264_05025 +0.3 1.2 ATP phosphoribosyltransferase compare
CA264_19885 +0.3 1.7 uridine kinase compare
CA264_21200 +0.3 1.8 hypothetical protein compare
CA264_19995 +0.3 0.9 hypothetical protein compare
CA264_10575 +0.3 0.9 hypothetical protein compare
CA264_17780 +0.3 0.6 hypothetical protein compare
CA264_02500 +0.3 0.7 hypothetical protein compare
CA264_05530 +0.3 2.1 phosphoenolpyruvate carboxylase compare
CA264_05415 +0.3 0.8 DsbA family protein compare
CA264_17100 +0.3 0.5 hypothetical protein compare
CA264_11605 +0.3 1.0 hypothetical protein compare
CA264_02195 +0.3 1.5 dioxygenase compare
CA264_10625 +0.3 1.8 glyoxalase/bleomycin resistance/dioxygenase family protein compare
CA264_02465 +0.3 0.8 hypothetical protein compare
CA264_15875 +0.3 2.3 bacillithiol biosynthesis cysteine-adding enzyme BshC compare
CA264_00430 +0.3 1.3 hypothetical protein compare
CA264_03410 +0.3 1.7 glutamine amidotransferase compare
CA264_03710 +0.3 1.5 AraC family transcriptional regulator compare
CA264_13605 +0.3 1.5 hypothetical protein compare
CA264_08800 +0.3 1.5 kinase inhibitor compare
CA264_04795 +0.3 1.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pontibacter actiniarum KMM 6156, DSM 19842 in stress experiments

For stress Sodium nitrite across organisms