Experiment set1IT064 for Escherichia coli BL21

Compare to:

NophageControl

200 most important genes:

  gene name fitness t score description  
ECD_03685 -6.8 -6.6 diaminopimelate epimerase compare
ECD_03590 -3.9 -3.8 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase compare
ECD_03687 -3.2 -4.0 site-specific tyrosine recombinase compare
ECD_03067 -3.1 -2.9 RNA polymerase, sigma 54 (sigma N) factor compare
ECD_04038 -2.5 -2.4 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase compare
ECD_00014 -2.5 -3.1 chaperone Hsp70, with co-chaperone DnaJ compare
ECD_02459 -2.3 -2.7 gap repair protein compare
ECD_03238 -2.2 -4.3 D-ribulose-5-phosphate 3-epimerase compare
ECD_02399 -2.1 -4.2 GMP synthetase (glutamine aminotransferase) compare
ECD_02507 -2.0 -2.9 toxic UPF0083 family protein inhibitor of 70S ribosome formation compare
ECD_02738 -1.9 -3.7 2-octaprenylphenol hydroxylase, FAD-dependent compare
ECD_03625 -1.8 -6.3 5-methylaminomethyl-2-thiouridine modification at tRNA U34 compare
ECD_03075 -1.8 -7.7 aerobic respiration control sensor histidine protein kinase, cognate to two-component response regulators ArcA and RssB compare
ECD_02207 -1.7 -5.0 NADH:ubiquinone oxidoreductase, membrane subunit H compare
ECD_00933 -1.7 -5.5 outer membrane porin 1a (Ia compare
ECD_02549 -1.7 -8.3 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor compare
ECD_02726 -1.7 -5.5 site-specific tyrosine recombinase compare
ECD_02206 -1.5 -2.2 NADH:ubiquinone oxidoreductase, chain I compare
ECD_00681 -1.5 -1.7 succinate dehydrogenase, membrane subunit, binds cytochrome b556 compare
ECD_03731 -1.5 -3.7 TatABCE protein translocation system subunit compare
ECD_03119 -1.4 -2.4 global DNA-binding transcriptional dual regulator compare
ECD_03036 -1.4 -4.3 transcription termination/antitermination L factor compare
ECD_03571 -1.4 -1.1 DUF1375 family outer membrane protein compare
ECD_01162 -1.4 -2.8 fatty acid metabolism regulon transcriptional regulator compare
ECD_04070 -1.4 -3.0 50S ribosomal subunit protein L9 compare
ECD_01818 -1.4 -1.5 extracellular Colicin M immunity family protein compare
ECD_00682 -1.4 -3.2 succinate dehydrogenase, membrane subunit, binds cytochrome b556 compare
ECD_02765 -1.4 -4.7 transketolase 1, thiamine triphosphate-binding compare
ECD_03727 -1.3 -2.6 aerobic ubiquinone synthesis protein, SCP2 family protein compare
ECD_03037 -1.3 -4.1 ribosome maturation factor for 30S subunits compare
ECD_03897 -1.3 -5.1 glucosephosphate isomerase compare
ECD_03488 -1.3 -3.6 UDP-glucose:(heptosyl)lipopolysaccharide alpha-1,3-glucosyltransferase; lipopolysaccharide core biosynthesis protein; lipopolysaccharide glucosyltransferase I compare
ECD_04269 -1.3 -3.0 transcriptional repressor, tryptophan-binding compare
ECD_01250 -1.3 -2.6 DNA topoisomerase I, omega subunit compare
ECD_03017 -1.3 -1.5 outer membrane lipoprotein compare
ECD_03257 -1.3 -2.5 response regulator in two-component regulatory system with EnvZ compare
ECD_01826 -1.2 -2.5 myristoyl-acyl carrier protein (ACP)-dependent acyltransferase compare
ECD_01349 -1.2 -2.6 pyruvate-flavodoxin oxidoreductase compare
ECD_02470 -1.2 -4.0 ATP-dependent RNA helicase compare
ECD_02202 -1.2 -3.6 NADH:ubiquinone oxidoreductase, membrane subunit M compare
ECD_02889 -1.2 -3.6 septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts) compare
ECD_02203 -1.2 -5.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
ECD_00209 -1.1 -2.5 lipoprotein compare
ECD_03735 -1.1 -5.2 NAD(P)H-flavin reductase compare
ECD_01216 -1.1 -2.5 UPF0056 family inner membrane protein compare
ECD_02724 -1.1 -7.0 ssDNA exonuclease, 5 compare
ECD_00596 -1.1 -1.5 TatABCE protein translocation system subunit compare
ECD_01048 -1.1 -1.7 multicopy suppressor of secY and secA compare
ECD_01746 -1.1 -3.1 DUF1315 family protein compare
ECD_00021 -1.1 -2.2 putative usher protein compare
ECD_00018 -1.0 -2.4 sodium-proton antiporter compare
ECD_01898 -1.0 -1.4 nitrogen assimilation regulon transcriptional regulator; autorepressor compare
ECD_00006 -1.0 -5.4 peroxide resistance protein, lowers intracellular iron compare
ECD_00378 -1.0 -1.7 hypothetical protein compare
ECD_00480 -1.0 -2.7 FimA-like protein compare
ECD_01039 -1.0 -1.7 curlin subunit, amyloid curli fibers, cryptic compare
ECD_00260 -1.0 -1.9 reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide-dependent disulfide oxidoreductase family compare
ECD_03097 -1.0 -3.3 l-arginine-responsive arginine metabolism regulon transcriptional regulator compare
ECD_04030 -1.0 -1.3 phosphatidylserine decarboxylase compare
ECD_00683 -1.0 -4.0 succinate dehydrogenase, flavoprotein subunit compare
ECD_00501 -1.0 -2.4 uncharacterized protein, DLP12 prophage compare
ECD_00281 -1.0 -3.3 uncharacterized protein compare
ECD_00634 -1.0 -2.0 N-acetylglucosamine-6-phosphate deacetylase compare
ECD_01668 -1.0 -1.8 putative oxidoreductase compare
ECD_01221 -1.0 -2.1 oligopeptide ABC transporter ATPase compare
ECD_t00077 -1.0 -1.3 tRNA-Thr compare
ECD_00807 -0.9 -1.2 deoxyribose-5-phosphate-inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx compare
ECD_02736 -0.9 -2.3 glycine cleavage complex lipoylprotein compare
ECD_00380 -0.9 -1.2 cytochrome o ubiquinol oxidase subunit IV compare
ECD_01245 -0.9 -3.6 23S rRNA pseudouridine(2605) synthase compare
ECD_01664 -0.9 -1.1 putative acyl-CoA dehydrogenase compare
ECD_02109 -0.9 -2.7 microcin C ABC transporter permease compare
ECD_01153 -0.9 -1.7 periplasmic inhibitor of g-type lysozyme compare
ECD_00402 -0.9 -2.1 nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB compare
ECD_01577 -0.9 -0.9 response regulator of RstAB two-component system compare
ECD_02209 -0.9 -2.5 NADH:ubiquinone oxidoreductase, chain F compare
ECD_01915 -0.9 -2.5 putative TusA family sulfurtransferase compare
ECD_01957 -0.9 -1.8 GDP-mannose mannosyl hydrolase compare
ECD_03583 -0.9 -6.1 gap repair protein compare
ECD_00407 -0.9 -1.3 DUF1428 family protein compare
ECD_01101 -0.9 -2.0 OM lipoprotein stimulator of MrcB transpeptidase compare
ECD_02968 -0.9 -3.2 DUF1469 family inner membrane protein compare
ECD_01409 -0.9 -1.5 ATP-binding protein, periplasmic, function unknown compare
ECD_00552 -0.9 -1.6 stimulator of EntF adenylation activity, MbtH-like compare
ECD_01030 -0.9 -1.5 glyoxylate/hydroxypyruvate reductase A compare
ECD_00015 -0.9 -3.5 chaperone Hsp40, DnaK co-chaperone compare
ECD_00423 -0.9 -3.1 gap repair protein compare
ECD_02201 -0.9 -4.3 NADH:ubiquinone oxidoreductase, membrane subunit N compare
ECD_00687 -0.9 -3.2 succinyl-CoA synthetase, beta subunit compare
ECD_03509 -0.8 -3.5 ATP-dependent DNA helicase compare
ECD_00802 -0.8 -1.4 ribosomal protein S12 methylthiotransferase compare
ECD_t00059 -0.8 -1.4 tRNA-Thr compare
ECD_01966 -0.8 -2.6 colanic acid production tyrosine-protein kinase; autokinase; Ugd phosphorylase compare
ECD_01565 -0.8 -1.0 putative arabinose efflux transporter compare
ECD_02034 -0.8 -1.4 hypothetical protein compare
ECD_01253 -0.8 -2.9 aconitate hydratase 1; aconitase A compare
ECD_03669 -0.8 -3.0 TDP-4-oxo-6-deoxy-D-glucose transaminase compare
ECD_01972 -0.8 -1.6 uridine/cytidine kinase compare
ECD_02820 -0.8 -1.0 hypothetical protein compare
ECD_01770 -0.8 -2.2 D-malate oxidase, NAD-dependent; putative tartrate dehydrogenase compare
ECD_02710 -0.8 -1.2 CTP:molybdopterin cytidylyltransferase compare
ECD_01800 -0.8 -1.7 putative endopeptidase compare
ECD_02280 -0.8 -1.6 hybrid sensory histidine kinase in two-component regulatory system with EvgA compare
ECD_03999 -0.8 -1.4 antitoxin of GhoTS toxin-antitoxin pair; endonuclease for ghoT mRNA compare
ECD_02287 -0.8 -2.1 DUF2545 family putative inner membrane protein compare
ECD_00261 -0.8 -2.2 reactive chlorine species (RCS)-specific activator of the rcl genes compare
ECD_04265 -0.8 -3.3 DNA repair protein compare
ECD_01706 -0.8 -1.2 N,N'-diacetylchitobiose-specific enzyme IIC component of PTS compare
ECD_01241 -0.8 -1.4 putative RNA binding protein compare
ECD_03256 -0.8 -4.6 sensory histidine kinase in two-component regulatory system with OmpR compare
ECD_01642 -0.8 -2.7 putative oxidoreductase subunit compare
ECD_01964 -0.8 -2.0 putative acyl transferase compare
ECD_02297 -0.8 -1.4 putative enzyme IIB component of PTS compare
ECD_01878 -0.8 -2.9 excinuclease UvrABC, endonuclease subunit compare
ECD_03818 -0.8 -1.7 essential cell division protein compare
ECD_04074 -0.8 -3.1 hypothetical protein compare
ECD_02226 -0.8 -1.1 glutathione S-transferase compare
ECD_03241 -0.8 -3.5 3-dehydroquinate synthase compare
ECD_03121 -0.7 -0.9 putative membrane protein compare
ECD_01486 -0.7 -0.9 UPF0056 family inner membrane protein compare
ECD_04346 -0.7 -1.9 hypothetical protein compare
ECD_02398 -0.7 -1.1 nalidixic acid resistance protein, putative periplasmic protein compare
ECD_02907 -0.7 -3.0 transport channel compare
ECD_04107 -0.7 -1.9 trehalose-6-P hydrolase compare
ECD_02211 -0.7 -3.4 NADH:ubiquinone oxidoreductase, fused CD subunit compare
ECD_01489 -0.7 -2.2 transcriptional repressor of multiple antibiotic resistance compare
ECD_01775 -0.7 -1.4 acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) compare
ECD_00849 -0.7 -0.8 putative DNA-invertase compare
ECD_02998 -0.7 -1.8 N-acetylgalactosamine-specific enzyme IIB component of PTS compare
ECD_00835 -0.7 -1.3 hypothetical protein compare
ECD_01479 -0.7 -1.6 putative membrane-bound diguanylate cyclase compare
ECD_03489 -0.7 -4.2 lipopolysaccharide core biosynthesis protein compare
ECD_00593 -0.7 -2.5 constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA-binding protein compare
ECD_01353 -0.7 -1.6 putative membrane-anchored protein, function unknown compare
ECD_02456 -0.7 -1.3 putative 4Fe-4S cluster-containing protein compare
ECD_01019 -0.7 -1.9 putative membrane protein compare
ECD_04062 -0.7 -1.8 L-ascorbate-specific enzyme IIA component of PTS compare
ECD_03671 -0.7 -1.7 TDP-Fuc4NAc:lipidIIFuc4NAc transferase compare
ECD_00438 -0.7 -1.0 copper-responsive regulon transcriptional regulator compare
ECD_02111 -0.7 -2.0 uncharacterized protein compare
ECD_00053 -0.7 -2.4 diadenosine tetraphosphatase compare
ECD_01584 -0.7 -1.5 putative outer membrane porin for beta-glucuronides porin protein compare
ECD_01681 -0.7 -1.2 integration host factor (IHF), DNA-binding protein, alpha subunit compare
ECD_03817 -0.7 -1.9 peptidase component of the HslUV protease compare
ECD_00684 -0.7 -1.6 succinate dehydrogenase, FeS subunit compare
ECD_01812 -0.7 -1.0 CopC family protein compare
ECD_03031 -0.7 -3.4 polynucleotide phosphorylase/polyadenylase compare
ECD_02194 -0.7 -1.5 GNAT family putative N-acetyltransferase compare
ECD_00836 -0.7 -0.7 putative Regulatory protein compare
ECD_01947 -0.6 -1.6 dTDP-glucose 4,6 dehydratase, NAD(P)-binding compare
ECD_00811 -0.6 -2.0 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis compare
ECD_01012 -0.6 -0.9 putative reactive intermediate detoxifying aminoacrylate hydrolase compare
ECD_02204 -0.6 -1.1 NADH:ubiquinone oxidoreductase, membrane subunit K compare
ECD_02208 -0.6 -3.1 NADH:ubiquinone oxidoreductase, chain G compare
ECD_04018 -0.6 -1.0 entericidin A membrane lipoprotein, antidote entericidin B compare
ECD_02324 -0.6 -2.5 sulfate/thiosulfate ABC transporter permease compare
ECD_01032 -0.6 -0.9 redox enzyme maturation protein (REMP) chaperone for YcdX compare
ECD_00019 -0.6 -3.0 transcriptional activator of nhaA compare
ECD_t00083 -0.6 -2.3 tRNA-Leu compare
ECD_03729 -0.6 -1.3 TatABCE protein translocation system subunit compare
ECD_02038 -0.6 -0.8 hypothetical protein compare
ECD_02302 -0.6 -2.3 nucleoside (except guanosine) transporter compare
ECD_02740 -0.6 -2.9 proline aminopeptidase P II compare
ECD_01910 -0.6 -0.9 UPF0265 family protein compare
ECD_02944 -0.6 -4.0 transcriptional repressor compare
ECD_00791 -0.6 -1.8 putative pyruvate formate lyase activating enzyme compare
ECD_00688 -0.6 -2.0 succinyl-CoA synthetase, NAD(P)-binding, alpha subunit compare
ECD_02443 -0.6 -2.3 serine hydroxymethyltransferase compare
ECD_04119 -0.6 -0.7 SopA-central-domain-like hexapeptide repeat protein compare
ECD_00707 -0.6 -1.9 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible compare
ECD_02212 -0.6 -3.5 NADH:ubiquinone oxidoreductase, chain B compare
ECD_02100 -0.6 -2.2 UPF0153 cysteine cluster protein compare
ECD_03086 -0.6 -2.3 sialic acid-inducible nan operon repressor compare
ECD_01954 -0.6 -1.1 phosphomannomutase compare
ECD_01081 -0.6 -1.3 uncharacterized protein compare
ECD_01051 -0.6 -2.6 putative rhodanese-related sulfurtransferase compare
ECD_02464 -0.6 -2.9 SoxR iron-sulfur cluster reduction factor component compare
ECD_04045 -0.6 -1.8 nitric oxide-sensitive repressor for NO regulon compare
ECD_02401 -0.6 -2.3 exonuclease VII, large subunit compare
ECD_02254 -0.6 -1.3 chorismate synthase compare
ECD_01195 -0.6 -0.6 cation transport regulator compare
ECD_00165 -0.6 -1.9 uridylyltransferase compare
ECD_01974 -0.6 -1.5 3-methyl-adenine DNA glycosylase II compare
ECD_02247 -0.6 -2.7 putative arabinose efflux transporter compare
ECD_02106 -0.6 -1.7 resistance protein for phages lambda and N4, putative membrane-anchored cyclic-di-GMP phosphodiesterase compare
ECD_00680 -0.6 -2.9 citrate synthase compare
ECD_01896 -0.6 -0.8 putative multdrug exporter, MATE family compare
ECD_00909 -0.6 -2.6 ribosomal protein S12 methylthiotransferase accessory factor compare
ECD_00575 -0.6 -1.8 alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)-binding compare
ECD_00881 -0.6 -1.9 putative OLD family ATP-dependent endonuclease; DUF2813 family protein compare
ECD_03813 -0.6 -1.5 FtsZ stabilizer, septal ring assembly factor, cell division stimulator compare
ECD_02432 -0.6 -1.0 3-phenylpropionate dioxygenase, ferredoxin subunit compare
ECD_00779 -0.6 -1.3 Fe-binding and storage protein; stress-inducible DNA-binding protein compare
ECD_03436 -0.6 -1.4 putative regulatory protein compare
ECD_01763 -0.6 -1.1 diguanylate cyclase compare
ECD_03407 -0.6 -1.3 toxic polypeptide, small compare
ECD_01300 -0.6 -2.0 aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase compare
ECD_00956 -0.6 -1.1 DUF330 family putative lipoprotein compare
ECD_01026 -0.6 -1.2 biofilm adhesin polysaccharide PGA secretin; OM porin; poly-beta-1,6-N-acetyl-D-glucosamine export protein compare
ECD_04051 -0.6 -0.9 UPF0719 family inner membrane protein compare


Specific Phenotypes

None in this experiment

For Escherichia coli BL21 in lb_plus_sm_buffer experiments