Experiment set1IT063 for Pseudomonas sp. RS175

Compare to:

D-Ribose carbon 10 mM

200 most important genes:

  gene name fitness t score description  
PFR28_02737 -6.5 -4.5 Ribose import binding protein RbsB compare
PFR28_02983 -4.7 -12.2 HTH-type transcriptional regulator XynR compare
PFR28_04933 -4.6 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PFR28_02733 -4.5 -6.4 Ribokinase compare
PFR28_04929 -4.3 -8.2 Histidine biosynthesis bifunctional protein HisB compare
PFR28_05015 -4.3 -25.4 Glutamate synthase [NADPH] large chain compare
PFR28_04278 -4.2 -13.9 Dihydroxy-acid dehydratase compare
PFR28_03724 -4.1 -10.3 Glucose-6-phosphate isomerase compare
PFR28_00186 -4.1 -6.9 ATP phosphoribosyltransferase compare
PFR28_02824 -4.0 -10.3 3-isopropylmalate dehydratase large subunit compare
PFR28_03860 -4.0 -5.7 putative murein peptide carboxypeptidase compare
PFR28_02821 -3.9 -19.7 3-isopropylmalate dehydrogenase compare
PFR28_04930 -3.8 -11.4 Imidazole glycerol phosphate synthase subunit HisH compare
PFR28_05016 -3.7 -15.3 Glutamate synthase [NADPH] small chain compare
PFR28_03217 -3.6 -3.5 Phosphoribosylformylglycinamidine cyclo-ligase compare
PFR28_00573 -3.6 -11.0 Glucose-6-phosphate 1-dehydrogenase compare
PFR28_04932 -3.6 -5.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PFR28_04308 -3.5 -5.3 Amino-acid acetyltransferase compare
PFR28_04986 -3.5 -7.9 Phosphoribosyl-AMP cyclohydrolase compare
PFR28_03699 -3.4 -11.1 Acetolactate synthase isozyme 3 large subunit compare
PFR28_02734 -3.4 -4.8 Ribose operon repressor compare
PFR28_03714 -3.3 -14.6 RNA polymerase-binding transcription factor DksA compare
PFR28_01930 -3.3 -5.4 HTH-type transcriptional regulator McbR compare
PFR28_03697 -3.3 -12.6 Ketol-acid reductoisomerase (NADP(+)) compare
PFR28_05125 -3.1 -7.9 ATP phosphoribosyltransferase regulatory subunit compare
PFR28_00187 -3.1 -11.6 Histidinol dehydrogenase compare
PFR28_04842 -3.0 -6.1 D-3-phosphoglycerate dehydrogenase compare
PFR28_04245 -3.0 -14.9 Homoserine O-succinyltransferase compare
PFR28_02811 -3.0 -8.3 Amidophosphoribosyltransferase compare
PFR28_04064 -3.0 -5.5 Ribosomal RNA small subunit methyltransferase A compare
PFR28_04202 -2.9 -8.6 5,10-methylenetetrahydrofolate reductase compare
PFR28_03718 -2.9 -6.0 Transcriptional regulatory protein ZraR compare
PFR28_03698 -2.7 -9.7 Acetolactate synthase isozyme 3 small subunit compare
PFR28_02736 -2.7 -9.1 Arabinose import ATP-binding protein AraG compare
PFR28_02735 -2.5 -5.1 Ribose import permease protein RbsC compare
PFR28_00089 -2.5 -2.5 Transcription termination/antitermination protein NusA compare
PFR28_02810 -2.5 -12.6 O-succinylhomoserine sulfhydrylase compare
PFR28_00561 -2.5 -3.7 Phosphogluconate dehydratase compare
PFR28_00851 -2.4 -2.3 Flagellum site-determining protein YlxH compare
PFR28_01142 -2.4 -12.5 Transaldolase compare
PFR28_00926 -2.4 -3.0 hypothetical protein compare
PFR28_02823 -2.4 -2.7 3-isopropylmalate dehydratase small subunit 1 compare
PFR28_04485 -2.3 -3.5 Phosphate-specific transport system accessory protein PhoU compare
PFR28_05105 -2.3 -8.7 Phosphoserine phosphatase SerB2 compare
PFR28_01410 -2.3 -9.3 Response regulator GacA compare
PFR28_04246 -2.2 -9.6 Bifunctional methionine biosynthesis protein MetXA/MetW compare
PFR28_05139 -2.1 -2.9 hypothetical protein compare
PFR28_01366 -2.1 -7.8 Sulfite reductase [ferredoxin] compare
PFR28_00427 -2.0 -12.7 RNA polymerase sigma factor RpoS compare
PFR28_01118 -2.0 -4.5 hypothetical protein compare
PFR28_02613 -2.0 -9.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
PFR28_00305 -1.9 -6.6 2-isopropylmalate synthase compare
PFR28_04831 -1.9 -3.7 RNA pyrophosphohydrolase compare
PFR28_02603 -1.8 -6.5 Siroheme synthase compare
PFR28_03202 -1.8 -2.8 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFR28_03227 -1.7 -8.2 Signal transduction histidine-protein kinase BarA compare
PFR28_01581 -1.7 -6.3 hypothetical protein compare
PFR28_01365 -1.7 -3.9 hypothetical protein compare
PFR28_04782 -1.6 -9.6 hypothetical protein compare
PFR28_05212 -1.6 -8.5 Sensor histidine kinase RcsC compare
PFR28_03223 -1.6 -8.8 GTP pyrophosphokinase compare
PFR28_03413 -1.6 -3.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PFR28_04071 -1.5 -1.6 Multifunctional CCA protein compare
PFR28_05160 -1.5 -1.8 hypothetical protein compare
PFR28_05000 -1.4 -1.4 Cell division protein FtsN compare
PFR28_02210 -1.4 -1.6 cAMP-activated global transcriptional regulator CRP compare
PFR28_04436 -1.4 -5.9 hypothetical protein compare
PFR28_03902 -1.4 -1.1 hypothetical protein compare
PFR28_01672 -1.4 -2.5 hypothetical protein compare
PFR28_01876 -1.4 -1.3 hypothetical protein compare
PFR28_04992 -1.3 -1.6 hypothetical protein compare
PFR28_02127 -1.3 -1.9 hypothetical protein compare
PFR28_00572 -1.3 -5.4 HTH-type transcriptional regulator HexR compare
PFR28_04958 -1.3 -1.2 hypothetical protein compare
PFR28_01173 -1.3 -1.9 hypothetical protein compare
PFR28_04403 -1.2 -1.8 hypothetical protein compare
PFR28_03822 -1.2 -1.6 Acetyltransferase compare
PFR28_02283 -1.2 -2.4 hypothetical protein compare
PFR28_00988 -1.2 -6.6 Sensor histidine kinase RcsC compare
PFR28_03666 -1.2 -1.8 hypothetical protein compare
PFR28_02201 -1.2 -1.6 Chaperone SurA compare
PFR28_03749 -1.2 -1.5 Outer membrane protein assembly factor BamD compare
PFR28_03282 -1.2 -4.3 Arginine N-succinyltransferase subunit alpha compare
PFR28_00990 -1.1 -1.6 Free methionine-R-sulfoxide reductase compare
PFR28_03463 -1.1 -1.6 hypothetical protein compare
PFR28_04345 -1.1 -8.2 Polyphosphate kinase compare
PFR28_00873 -1.1 -4.2 hypothetical protein compare
PFR28_01427 -1.1 -2.3 hypothetical protein compare
PFR28_00069 -1.1 -3.0 Outer membrane protein assembly factor BamE compare
PFR28_01359 -1.1 -1.4 hypothetical protein compare
PFR28_04120 -1.0 -1.5 hypothetical protein compare
PFR28_01313 -1.0 -3.4 hypothetical protein compare
PFR28_04585 -1.0 -4.3 Chromosome partitioning protein ParA compare
PFR28_03420 -1.0 -2.9 hypothetical protein compare
PFR28_01230 -1.0 -3.2 Lon protease compare
PFR28_00188 -1.0 -6.2 Histidinol-phosphate aminotransferase compare
PFR28_01156 -1.0 -4.3 hypothetical protein compare
PFR28_00033 -1.0 -1.4 hypothetical protein compare
PFR28_03530 -1.0 -1.1 hypothetical protein compare
PFR28_03240 -1.0 -1.2 IS110 family transposase ISPfl1 compare
PFR28_00856 -0.9 -4.3 Protein-glutamate methylesterase/protein-glutamine glutaminase 1 compare
PFR28_05120 -0.9 -5.0 tRNA dimethylallyltransferase compare
PFR28_02975 -0.9 -2.5 hypothetical protein compare
PFR28_02719 -0.9 -2.9 Integration host factor subunit alpha compare
PFR28_02174 -0.9 -2.2 RNA pyrophosphohydrolase compare
PFR28_01845 -0.9 -3.1 Cysteine/O-acetylserine efflux protein compare
PFR28_02846 -0.9 -4.0 Adaptive-response sensory-kinase SasA compare
PFR28_00838 -0.9 -5.6 Sensor histidine kinase RcsC compare
PFR28_05223 -0.9 -1.8 Methyl-accepting chemotaxis protein CtpL compare
PFR28_04830 -0.9 -5.5 Phosphoenolpyruvate-dependent phosphotransferase system compare
PFR28_04924 -0.9 -1.6 putative Fe(2+)-trafficking protein compare
PFR28_04052 -0.9 -7.0 hypothetical protein compare
PFR28_00764 -0.9 -1.8 hypothetical protein compare
PFR28_00837 -0.9 -3.2 hypothetical protein compare
PFR28_02449 -0.9 -5.5 putative branched-chain-amino-acid aminotransferase compare
PFR28_03244 -0.9 -4.3 Transcriptional regulatory protein PhoP compare
PFR28_02776 -0.9 -1.3 Putative mycofactocin biosynthesis glycosyltransferase MftF compare
PFR28_01081 -0.8 -3.1 hypothetical protein compare
PFR28_05244 -0.8 -5.4 Copper-exporting P-type ATPase compare
PFR28_01646 -0.8 -2.7 hypothetical protein compare
PFR28_00476 -0.8 -1.5 hypothetical protein compare
PFR28_00602 -0.8 -1.2 hypothetical protein compare
PFR28_04518 -0.8 -5.2 2-oxoglutarate carboxylase small subunit compare
PFR28_05146 -0.8 -2.1 hypothetical protein compare
PFR28_03344 -0.8 -0.7 Ion-translocating oxidoreductase complex subunit A compare
PFR28_00095 -0.8 -1.4 tRNA-Thr compare
PFR28_03412 -0.8 -2.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PFR28_04089 -0.8 -0.8 PqqA binding protein compare
PFR28_01060 -0.8 -3.6 HTH-type transcriptional repressor NanR compare
PFR28_02426 -0.8 -4.9 HTH-type transcriptional regulator MurR compare
PFR28_00403 -0.8 -2.9 Regulator of sigma-E protease RseP compare
PFR28_05176 -0.8 -1.6 Chaperone modulatory protein CbpM compare
PFR28_03844 -0.8 -2.6 Thiamine-phosphate synthase compare
PFR28_00839 -0.8 -2.6 hypothetical protein compare
PFR28_05006 -0.8 -6.8 Penicillin-binding protein 1A compare
PFR28_02307 -0.8 -2.2 hypothetical protein compare
PFR28_02478 -0.8 -1.2 hypothetical protein compare
PFR28_02688 -0.8 -1.0 hypothetical protein compare
PFR28_03596 -0.8 -1.2 Transcriptional regulator MraZ compare
PFR28_00730 -0.8 -1.6 5-oxoprolinase subunit C compare
PFR28_03704 -0.7 -4.8 hypothetical protein compare
PFR28_01816 -0.7 -1.0 hypothetical protein compare
PFR28_05036 -0.7 -0.7 Acyl carrier protein compare
PFR28_00857 -0.7 -4.1 Chemotaxis protein PomA compare
PFR28_00170 -0.7 -2.9 RNase adapter protein RapZ compare
PFR28_04262 -0.7 -2.8 Ribosomal RNA small subunit methyltransferase D compare
PFR28_00105 -0.7 -4.0 hypothetical protein compare
PFR28_04517 -0.7 -4.9 Oxaloacetate decarboxylase alpha chain compare
PFR28_03218 -0.7 -2.5 Phosphoribosylglycinamide formyltransferase compare
PFR28_03598 -0.7 -4.4 Penicillin-binding protein activator LpoA compare
PFR28_02205 -0.7 -1.9 hypothetical protein compare
PFR28_02577 -0.7 -2.3 hypothetical protein compare
PFR28_02990 -0.7 -1.9 hypothetical protein compare
PFR28_01809 -0.7 -0.7 hypothetical protein compare
PFR28_02154 -0.7 -2.7 hypothetical protein compare
PFR28_03359 -0.7 -4.2 Bacterioferritin compare
PFR28_02371 -0.7 -2.4 hypothetical protein compare
PFR28_00780 -0.7 -0.6 hypothetical protein compare
PFR28_01042 -0.7 -0.8 hypothetical protein compare
PFR28_04985 -0.7 -1.7 Phosphoribosyl-ATP pyrophosphatase compare
PFR28_04618 -0.7 -1.2 High-affinity zinc uptake system membrane protein ZnuB compare
PFR28_00194 -0.7 -4.1 Bifunctional enzyme CysN/CysC compare
PFR28_00206 -0.7 -2.6 'Dihydroneopterin triphosphate 2'-epimerase' transl_table=11 compare
PFR28_00472 -0.7 -1.7 Protein RecA compare
PFR28_05104 -0.7 -1.3 hypothetical protein compare
PFR28_03507 -0.7 -1.8 Protein YrdA compare
PFR28_01661 -0.7 -1.2 Delta(1)-pyrroline-2-carboxylate/Delta(1)- piperideine-2-carboxylate reductase compare
PFR28_03883 -0.7 -3.4 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase compare
PFR28_01312 -0.7 -1.3 HTH-type transcriptional regulator NorG compare
PFR28_02397 -0.7 -2.9 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare
PFR28_02226 -0.7 -2.2 Nitric oxide reductase subunit C compare
PFR28_00356 -0.7 -1.8 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
PFR28_05134 -0.7 -1.3 hypothetical protein compare
PFR28_04381 -0.6 -3.1 hypothetical protein compare
PFR28_03843 -0.6 -2.5 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFR28_04737 -0.6 -4.3 Protein YdgA compare
PFR28_04377 -0.6 -3.4 hypothetical protein compare
PFR28_04706 -0.6 -1.8 hypothetical protein compare
PFR28_01748 -0.6 -1.4 hypothetical protein compare
PFR28_04380 -0.6 -1.3 Transcriptional regulator SutA compare
PFR28_03276 -0.6 -2.1 6,7-dimethyl-8-ribityllumazine synthase compare
PFR28_02655 -0.6 -2.6 hypothetical protein compare
PFR28_04832 -0.6 -3.8 putative phosphatase compare
PFR28_02403 -0.6 -1.0 Na(+)/H(+) antiporter subunit C1 compare
PFR28_00148 -0.6 -1.2 hypothetical protein compare
PFR28_03429 -0.6 -2.4 Thiamine-phosphate synthase compare
PFR28_01719 -0.6 -3.9 Sensor histidine kinase RcsC compare
PFR28_04363 -0.6 -2.5 Protein HemY compare
PFR28_02686 -0.6 -2.2 Prophage DNA-packing protein NohA compare
PFR28_04584 -0.6 -1.3 putative chromosome-partitioning protein ParB compare
PFR28_03052 -0.6 -0.9 hypothetical protein compare
PFR28_00325 -0.6 -1.7 Inner membrane protein YpjD compare
PFR28_03012 -0.6 -2.8 Phosphate acyltransferase compare
PFR28_01080 -0.6 -4.0 Oxygen-independent coproporphyrinogen III oxidase compare
PFR28_02111 -0.6 -2.1 hypothetical protein compare
PFR28_04088 -0.6 -4.3 Pyrroloquinoline-quinone synthase compare
PFR28_00657 -0.6 -2.4 Glutathione transferase FosA compare
PFR28_02442 -0.6 -1.5 hypothetical protein compare
PFR28_02305 -0.6 -1.4 HTH-type transcriptional regulator PgrR compare
PFR28_03653 -0.6 -1.3 Molybdopterin-synthase adenylyltransferase compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source D-Ribose in Pseudomonas sp. RS175

For carbon source D-Ribose across organisms