Experiment set1IT062 for Magnetospirillum magneticum AMB-1

Compare to:

150_mag_3

200 most important genes:

  gene name fitness t score description  
AMB_RS11740 -4.3 -19.6 ubiquinone-binding protein compare
AMB_RS04970 -3.9 -18.6 PDZ domain-containing protein compare
AMB_RS04965 -3.9 -15.2 trypsin-like serine protease compare
AMB_RS04960 -3.6 -16.2 Na+/H+ antiporter NhaD compare
AMB_RS04930 -3.6 -27.3 PDZ domain-containing protein compare
AMB_RS04950 -3.5 -12.3 hypothetical protein compare
AMB_RS04955 -3.4 -24.1 cation transporter compare
AMB_RS04945 -3.3 -19.3 hypothetical protein compare
AMB_RS11640 -2.9 -2.0 UbiX family flavin prenyltransferase compare
AMB_RS04975 -2.8 -11.8 tetratricopeptide repeat protein compare
AMB_RS05000 -2.7 -9.5 hypothetical protein compare
AMB_RS20750 -2.6 -9.4 YbaB/EbfC family nucleoid-associated protein compare
AMB_RS21290 -2.2 -2.3 DUF4139 domain-containing protein compare
AMB_RS02725 -2.1 -3.3 phospholipid carrier-dependent glycosyltransferase compare
AMB_RS04995 -2.1 -9.5 hypothetical protein compare
AMB_RS24000 -2.1 -3.0 glycosyltransferase family 1 protein compare
AMB_RS01190 -1.9 -6.7 UbiD family decarboxylase compare
AMB_RS04900 -1.9 -5.0 hypothetical protein compare
AMB_RS21265 -1.8 -4.7 c-type cytochrome biogenesis protein CcmI compare
AMB_RS04895 -1.8 -6.0 hypothetical protein compare
AMB_RS24675 -1.8 -1.6 hypothetical protein compare
AMB_RS22800 -1.7 -3.3 glutathione synthase compare
AMB_RS13920 -1.7 -2.4 molybdopterin-guanine dinucleotide biosynthesis protein B compare
AMB_RS23090 -1.7 -5.5 NAD(P)-dependent oxidoreductase compare
AMB_RS19230 -1.7 -3.5 molybdopterin-guanine dinucleotide biosynthesis protein B compare
AMB_RS00355 -1.6 -8.0 radical SAM protein compare
AMB_RS03045 -1.6 -0.7 hydrogen peroxide-inducible genes activator compare
AMB_RS01830 -1.6 -0.6 hypothetical protein compare
AMB_RS07010 -1.5 -7.2 ATP-dependent helicase compare
AMB_RS12615 -1.4 -3.1 phytoene/squalene synthetase compare
AMB_RS07745 -1.4 -2.1 disulfide bond formation protein B compare
AMB_RS23165 -1.4 -1.5 hypothetical protein compare
AMB_RS17625 -1.3 -7.7 hopanoid biosynthesis associated radical SAM protein HpnJ compare
AMB_RS08465 -1.3 -7.6 ABC transporter ATP-binding protein compare
AMB_RS20350 -1.2 -5.0 aspartate 1-decarboxylase compare
AMB_RS15295 -1.2 -1.9 iron donor protein CyaY compare
AMB_RS19790 -1.2 -4.7 NAD(P)-dependent oxidoreductase compare
AMB_RS04905 -1.2 -1.7 hypothetical protein compare
AMB_RS07115 -1.2 -2.5 Lrp/AsnC family transcriptional regulator compare
AMB_RS15610 -1.2 -5.0 hypothetical protein compare
AMB_RS11195 -1.2 -1.6 sulfate adenylyltransferase subunit 2 compare
AMB_RS14035 -1.2 -4.5 endopeptidase La compare
AMB_RS17045 -1.2 -2.9 sulfurtransferase TusD compare
AMB_RS19880 -1.2 -3.2 site-specific tyrosine recombinase XerD compare
AMB_RS03835 -1.1 -2.0 YicC family protein compare
AMB_RS01330 -1.1 -3.7 glycosyltransferase family 39 protein compare
AMB_RS22150 -1.1 -1.7 MarR family transcriptional regulator compare
AMB_RS00010 -1.1 -1.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
AMB_RS22450 -1.1 -7.4 electron transfer flavoprotein-ubiquinone oxidoreductase compare
AMB_RS13415 -1.1 -6.4 sulfurtransferase FdhD compare
AMB_RS08455 -1.1 -7.4 branched-chain amino acid ABC transporter permease compare
AMB_RS20120 -1.1 -2.8 VOC family protein compare
AMB_RS02660 -1.1 -4.5 SCO family protein compare
AMB_RS08470 -1.1 -3.0 ABC transporter ATP-binding protein compare
AMB_RS05670 -1.1 -1.5 response regulator compare
AMB_RS22810 -1.0 -1.1 hypothetical protein compare
AMB_RS17935 -1.0 -6.1 DMSO reductase compare
AMB_RS16100 -1.0 -3.8 RNA polymerase sigma factor RpoH compare
AMB_RS05350 -1.0 -1.7 hypothetical protein compare
AMB_RS17925 -1.0 -8.2 formate dehydrogenase compare
AMB_RS14855 -1.0 -2.0 molybdate ABC transporter substrate-binding protein compare
AMB_RS08460 -1.0 -6.2 branched-chain amino acid ABC transporter permease compare
AMB_RS12295 -1.0 -1.6 TatD family deoxyribonuclease compare
AMB_RS17930 -1.0 -6.9 4Fe-4S dicluster domain-containing protein compare
AMB_RS05990 -1.0 -1.9 hypothetical protein compare
AMB_RS10555 -1.0 -2.6 DNA repair protein RadA compare
AMB_RS07865 -0.9 -4.2 ATP-dependent chaperone ClpB compare
AMB_RS10540 -0.9 -3.4 KR domain-containing protein compare
AMB_RS18015 -0.9 -3.3 ABC transporter ATP-binding protein compare
AMB_RS01305 -0.9 -5.3 protocatechuate 4,5-dioxygenase subunit alpha compare
AMB_RS07070 -0.9 -1.1 Crp/Fnr family transcriptional regulator compare
AMB_RS21385 -0.9 -3.9 helix-turn-helix transcriptional regulator compare
AMB_RS17645 -0.9 -6.3 iron-sulfur cluster carrier protein ApbC compare
AMB_RS23065 -0.9 -2.8 hypothetical protein compare
AMB_RS14270 -0.9 -1.6 response regulator compare
AMB_RS17335 -0.9 -1.4 N-acyl-L-homoserine lactone synthetase compare
AMB_RS08450 -0.9 -6.6 ABC transporter substrate-binding protein compare
AMB_RS22375 -0.8 -2.1 hypothetical protein compare
AMB_RS06300 -0.8 -6.6 phenylacetyl CoA compare
AMB_RS00820 -0.8 -3.2 GDP-L-fucose synthase compare
AMB_RS20145 -0.8 -2.3 chromosome segregation ATPase compare
AMB_RS00810 -0.8 -4.1 hypothetical protein compare
AMB_RS09095 -0.8 -2.5 hypothetical protein compare
AMB_RS07980 -0.8 -2.3 4Fe-4S ferredoxin compare
AMB_RS14620 -0.8 -2.4 ArsR family transcriptional regulator compare
AMB_RS00130 -0.8 -3.0 tetratricopeptide repeat protein compare
AMB_RS05405 -0.8 -0.7 4Fe-4S dicluster domain-containing protein compare
AMB_RS04920 -0.8 -2.8 MFS transporter compare
AMB_RS18220 -0.8 -1.0 universal stress protein compare
AMB_RS22490 -0.8 -1.6 YdcF family protein compare
AMB_RS10000 -0.8 -1.8 methyl-accepting chemotaxis protein compare
AMB_RS01655 -0.8 -1.5 hypothetical protein compare
AMB_RS20020 -0.7 -1.2 cell division protein ZapE compare
AMB_RS00815 -0.7 -5.1 hypothetical protein compare
AMB_RS17050 -0.7 -2.6 sulfurtransferase TusC compare
AMB_RS17795 -0.7 -0.6 hypothetical protein compare
AMB_RS22580 -0.7 -4.8 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
AMB_RS00795 -0.7 -5.2 LPS biosynthesis protein compare
AMB_RS02240 -0.7 -1.2 surface lipoprotein compare
AMB_RS11535 -0.7 -1.3 ChbG/HpnK family deacetylase compare
AMB_RS04910 -0.7 -1.4 hypothetical protein compare
AMB_RS03405 -0.7 -0.6 LysR family transcriptional regulator compare
AMB_RS22235 -0.7 -1.4 RNase adaptor protein RapZ compare
AMB_RS03205 -0.7 -1.3 DNA recombination/repair protein RecA compare
AMB_RS07100 -0.7 -2.5 Lrp/AsnC family transcriptional regulator compare
AMB_RS15605 -0.7 -3.4 ChbG/HpnK family deacetylase compare
AMB_RS09990 -0.7 -2.9 hypothetical protein compare
AMB_RS06885 -0.7 -6.3 peptide synthetase compare
AMB_RS21185 -0.7 -2.3 GntR family transcriptional regulator compare
AMB_RS18850 -0.7 -1.9 class I poly(R)-hydroxyalkanoic acid synthase compare
AMB_RS12785 -0.7 -2.3 murein transglycosylase compare
AMB_RS06295 -0.7 -3.3 LysR family transcriptional regulator compare
AMB_RS20770 -0.7 -2.2 TrkH family potassium uptake protein compare
AMB_RS18145 -0.7 -2.1 GntR family transcriptional regulator compare
AMB_RS17450 -0.7 -0.8 DUF1987 domain-containing protein compare
AMB_RS19630 -0.6 -1.3 chemotaxis protein CheB compare
AMB_RS06305 -0.6 -3.7 4Fe-4S dicluster domain-containing protein compare
AMB_RS22085 -0.6 -6.3 cytochrome c oxidase accessory protein CcoG compare
AMB_RS05245 -0.6 -5.1 ferrous iron transport protein B compare
AMB_RS00805 -0.6 -4.6 haloacid dehalogenase compare
AMB_RS14150 -0.6 -2.3 hypothetical protein compare
AMB_RS14025 -0.6 -1.3 tRNA-Val compare
AMB_RS03725 -0.6 -3.0 DNA helicase II compare
AMB_RS02835 -0.6 -1.2 two-component sensor histidine kinase compare
AMB_RS15560 -0.6 -1.0 hemerythrin compare
AMB_RS12290 -0.6 -2.4 MBL fold metallo-hydrolase compare
AMB_RS15550 -0.6 -2.0 copper chaperone PCu(A)C compare
AMB_RS06890 -0.6 -2.7 4'-phosphopantetheinyl transferase compare
AMB_RS01300 -0.6 -4.1 aldo/keto reductase compare
AMB_RS07840 -0.6 -4.4 ABC transporter substrate-binding protein compare
AMB_RS14810 -0.6 -4.1 VWA domain-containing protein compare
AMB_RS05235 -0.6 -1.9 hypothetical protein compare
AMB_RS13815 -0.6 -1.6 hypothetical protein compare
AMB_RS06755 -0.6 -1.2 hypothetical protein compare
AMB_RS06280 -0.6 -3.1 hypothetical protein compare
AMB_RS06310 -0.6 -2.4 phenylacetyl CoA compare
AMB_RS12325 -0.6 -2.7 lytic murein transglycosylase compare
AMB_RS14240 -0.6 -1.9 hypothetical protein compare
AMB_RS01285 -0.6 -3.8 dehydrogenase compare
AMB_RS11470 -0.6 -3.6 homospermidine synthase compare
AMB_RS05435 -0.6 -1.2 ABC transporter permease compare
AMB_RS10475 -0.6 -0.8 transcriptional regulator NrdR compare
AMB_RS08255 -0.6 -1.2 hypothetical protein compare
AMB_RS04885 -0.6 -1.2 hypothetical protein compare
AMB_RS05530 -0.6 -3.4 glycosyltransferase compare
AMB_RS01855 -0.6 -2.9 hypothetical protein compare
AMB_RS13530 -0.6 -3.9 periplasmic nitrate reductase subunit alpha compare
AMB_RS16375 -0.6 -1.4 MFS transporter compare
AMB_RS20665 -0.6 -1.0 class I SAM-dependent methyltransferase compare
AMB_RS02815 -0.6 -3.5 hypothetical protein compare
AMB_RS00915 -0.6 -3.9 indolepyruvate oxidoreductase subunit B compare
AMB_RS23195 -0.6 -1.4 ABC transporter ATP-binding protein compare
AMB_RS20830 -0.6 -2.2 peptide-methionine (R)-S-oxide reductase compare
AMB_RS00800 -0.6 -2.8 nucleoside-diphosphate-sugar pyrophosphorylase compare
AMB_RS19580 -0.5 -1.1 hypothetical protein compare
AMB_RS21125 -0.5 -3.3 YciI family protein compare
AMB_RS00910 -0.5 -4.8 indolepyruvate ferredoxin subunit alpha compare
AMB_RS01310 -0.5 -2.3 protocatechuate 3,4-dioxygenase subunit beta compare
AMB_RS03495 -0.5 -3.2 alpha/beta hydrolase compare
AMB_RS12655 -0.5 -3.3 DUF815 domain-containing protein compare
AMB_RS02530 -0.5 -3.3 U32 family peptidase compare
AMB_RS02650 -0.5 -2.6 uroporphyrinogen-III C-methyltransferase compare
AMB_RS09090 -0.5 -1.9 hypothetical protein compare
AMB_RS00695 -0.5 -2.1 gfo/Idh/MocA family oxidoreductase compare
AMB_RS20835 -0.5 -1.0 DUF2132 domain-containing protein compare
AMB_RS16955 -0.5 -1.7 Crp/Fnr family transcriptional regulator compare
AMB_RS01875 -0.5 -2.1 hypothetical protein compare
AMB_RS17355 -0.5 -1.2 membrane protein compare
AMB_RS16995 -0.5 -3.0 carboxymuconolactone decarboxylase family protein compare
AMB_RS07825 -0.5 -2.5 hemerythrin compare
AMB_RS12755 -0.5 -2.1 exodeoxyribonuclease III compare
AMB_RS08580 -0.5 -0.9 hypothetical protein compare
AMB_RS01700 -0.5 -2.1 hypothetical protein compare
AMB_RS07180 -0.5 -1.8 membrane protein compare
AMB_RS04740 -0.5 -2.2 hypothetical protein compare
AMB_RS13525 -0.5 -0.9 ferredoxin-type protein NapG compare
AMB_RS22575 -0.5 -3.8 GNAT family N-acetyltransferase compare
AMB_RS04280 -0.5 -4.0 polyhydroxyalkanoate synthesis repressor PhaR compare
AMB_RS18250 -0.5 -1.5 hypothetical protein compare
AMB_RS02700 -0.5 -2.6 carboxypeptidase compare
AMB_RS04050 -0.5 -3.6 thiamine pyrophosphate-binding protein compare
AMB_RS12320 -0.5 -1.1 septal ring lytic transglycosylase RlpA family protein compare
AMB_RS07120 -0.5 -2.0 heme d1 biosynthesis radical SAM protein NirJ compare
AMB_RS02085 -0.5 -2.0 hypothetical protein compare
AMB_RS19545 -0.5 -1.2 elongation factor 4 compare
AMB_RS04185 -0.5 -3.0 IMP dehydrogenase compare
AMB_RS21455 -0.5 -2.2 XRE family transcriptional regulator compare
AMB_RS06630 -0.5 -2.0 hypothetical protein compare
AMB_RS17755 -0.5 -0.8 TIGR02453 family protein compare
AMB_RS00455 -0.5 -3.1 KR domain-containing protein compare
AMB_RS17460 -0.5 -1.7 PAS domain S-box protein compare
AMB_RS08115 -0.5 -2.9 carbon-nitrogen hydrolase family protein compare
AMB_RS16130 -0.5 -1.2 phosphoglycerate dehydrogenase compare
AMB_RS04365 -0.5 -2.8 YeeE/YedE family protein compare
AMB_RS17345 -0.5 -1.4 rubredoxin compare
AMB_RS23070 -0.5 -1.8 ferredoxin compare
AMB_RS23460 -0.5 -2.4 hemerythrin compare
AMB_RS23500 -0.5 -1.6 hypothetical protein compare
AMB_RS06910 -0.5 -0.6 glycosyl transferase compare
AMB_RS07275 -0.5 -1.8 xylanase/chitin deacetylase compare


Specific Phenotypes

None in this experiment

For Magnetospirillum magneticum AMB-1 in magnetic pulldown experiments

For magnetic pulldown Iron across organisms