Experiment set1IT062 for Agrobacterium fabrum C58

Compare to:

Sodium succinate dibasic hexahydrate carbon source

200 most important genes:

  gene name fitness t score description  
Atu1850 -8.4 -5.8 phosphoribosylformylglycinamidine synthetase II compare
Atu0679 -7.1 -6.9 ATP phosphoribosyltransferase compare
Atu2791 -7.0 -10.4 3-isopropylmalate dehydrogenase compare
Atu2289 -7.0 -20.6 anthranilate synthase component I and II compare
Atu1688 -6.8 -6.6 indole-3-glycerol-phosphate synthase compare
Atu3707 -6.8 -4.7 phosphoserine aminotransferase compare
Atu0400 -6.7 -4.6 orotate phosphoribosyltransferase compare
Atu0099 -6.7 -15.6 prephenate dehydratase compare
Atu1687 -6.6 -13.5 anthranilate phosphoribosyltransferase compare
Atu3706 -6.5 -8.9 D-3-phosphoglycerate dehydrogenase compare
Atu2718 -6.5 -9.9 homoserine O-succinyltransferase compare
Atu0035 -6.4 -14.4 phosphoenolpyruvate carboxykinase compare
Atu0432 -6.3 -12.9 O-succinylhomoserine sulfhydrylase compare
Atu1075 -6.3 -9.6 amidophosphoribosyltransferase compare
Atu0038 -6.3 -7.7 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0298 -6.3 -7.4 orotidine 5 compare
Atu0017 -6.3 -4.3 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1141 -6.1 -10.1 Phosphoribosylglycinamide synthetase compare
Atu3740 -6.1 -13.5 fructose bisphosphate aldolase compare
Atu2709 -6.0 -22.5 3-isopropylmalate dehydratase, large subunit compare
Atu0537 -6.0 -9.2 histidinol dehydrogenase compare
Atu0043 -6.0 -4.1 imidazoleglycerol-phosphate dehydratase compare
Atu3739 -6.0 -3.2 phosphoglycerate kinase compare
Atu2040 -6.0 -9.1 phosphoserine phosphatase compare
Atu1750 -5.8 -8.0 phosphoribosyl c-AMP cyclohydrolase compare
Atu2036 -5.8 -18.3 acetolactate synthase III, large subunit compare
Atu0039 -5.8 -4.0 imidazoleglycerol-phosphate synthase cyclase compare
Atu4505 -5.7 -13.2 LacI family transcriptional regulator compare
Atu0399 -5.7 -7.8 dihydroorotase compare
Atu0678 -5.7 -8.6 histidyl-tRNA synthetase compare
Atu2264 -5.6 -15.4 2-isopropylmalate synthase compare
Atu1205 -5.5 -16.7 threonine dehydratase compare
Atu3469 -5.4 -3.7 phosphoglyceromutase compare
Atu3754 -5.4 -8.1 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2747 -5.4 -14.1 hypothetical protein compare
Atu2790 -5.4 -2.9 3-isopropylmalate dehydratase, small subunit compare
Atu1307 -5.3 -7.7 dihydroorotase compare
Atu0486 -5.3 -8.2 dihydroorotate dehydrogenase compare
Atu1844 -5.2 -5.0 Phosphoribosylformylglycinamidine synthetase compare
Atu1140 -5.2 -7.7 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3783 -5.1 -17.9 glutamate synthase subunit beta compare
Atu1686 -4.9 -18.1 peptidyl-prolyl cis-trans isomerse D compare
Atu3885 -4.9 -8.5 inositol monophosphatase compare
Atu0421 -4.9 -2.8 ABC transporter, membrane spanning protein compare
Atu1588 -4.9 -11.8 homoserine dehydrogenase compare
Atu1620 -4.7 -15.9 triosephosphate isomerase compare
Atu0647 -4.7 -10.4 phosphoribosylamine--glycine ligase compare
Atu3784 -4.6 -29.4 glutamate synthase large subunit compare
Atu3755 -4.6 -8.2 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1845 -4.5 -8.5 phosphoribosylformylglycinamidine synthase I compare
Atu0041 -4.4 -4.3 glutamine amidotransferase compare
Atu3483 -4.4 -9.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu2015 -4.3 -14.9 aminotransferase compare
Atu2115 -4.3 -13.0 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu1030 -4.2 -3.0 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3482 -4.1 -9.6 pantoate--beta-alanine ligase compare
Atu2650 -4.1 -16.5 glycerol-3-phosphate dehydrogenase compare
Atu0040 -4.1 -2.3 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1308 -4.0 -7.0 aspartate carbamoyl transferase catalytic subunit compare
Atu2548 -3.9 -20.5 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu0723 -3.9 -4.3 FAD dependent oxidoreductase compare
Atu0602 -3.9 -13.2 glutamine synthetase compare
Atu1589 -3.9 -10.8 aminotransferase, class I compare
Atu0422 -3.7 -3.3 ABC transporter, membrane spanning protein compare
Atu3731 -3.5 -11.7 5-formyltetrahydrofolate cyclo-ligase compare
Atu1446 -3.4 -3.0 two component response regulator compare
Atu4096 -3.3 -10.6 nicotinate-nucleotide pyrophosphorylase compare
Atu0434 -3.2 -3.2 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1464 -3.2 -12.2 glycine cleavage system T protein, aminomethyltransferase compare
Atu0601 -3.0 -12.1 oxidoreductase compare
Atu1359 -3.0 -2.0 dnaK deletion suppressor protein compare
Atu1463 -2.9 -7.2 glycine cleavage system component H compare
Atu1462 -2.7 -13.4 glycine cleavage system protein P2 compare
Atu4098 -2.7 -17.3 quinolinate synthetase compare
Atu0030 -2.7 -2.8 phosphocarrier protein HPr compare
Atu1456 -2.6 -13.1 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu2640 -2.6 -8.9 hypothetical protein compare
Atu4097 -2.5 -12.7 L-aspartate oxidase compare
Atu1685 -2.4 -2.1 hypothetical protein compare
Atu3730 -2.4 -3.5 hypothetical protein compare
Atu1454 -2.3 -8.7 siroheme synthase compare
Atu0332 -2.3 -10.2 RNA polymerase sigma-54 factor compare
Atu2155 -2.2 -16.3 methionine synthase compare
Atu1748 -2.1 -10.0 NIFU-like protein compare
Atu3997 -2.1 -15.4 biotin synthetase compare
Atu2569 -2.0 -13.6 thiamine biosynthesis protein compare
Atu2125 -2.0 -3.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu0659 -2.0 -6.0 NTP pyrophosphohydrolase, MutT family compare
Atu0999 -2.0 -10.6 magnesium transport protein compare
Atu0876 -2.0 -2.0 superoxide dismutase compare
Atu3998 -1.9 -11.9 8-amino-7-oxononanoate synthase compare
Atu2728 -1.8 -7.3 beta (1-->2) glucan export ATP-binding protein compare
Atu0971 -1.8 -6.6 two component sensor kinase compare
Atu4000 -1.8 -12.1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu3288 -1.7 -8.4 hydroxyethylthiazole kinase compare
Atu3289 -1.7 -3.3 thiamine-phosphate pyrophosphorylase compare
Atu0029 -1.7 -6.4 S-adenosylhomocysteine hydrolase compare
Atu2205 -1.7 -7.4 transcriptional regulator, MarR family compare
Atu8115 -1.7 -3.5 Hypothetical Protein compare
Atu6114 -1.7 -2.8 hypothetical protein compare
Atu2020 -1.6 -3.6 transcriptional regulator, TetR family compare
Atu2684 -1.6 -1.3 hypothetical protein compare
Atu3999 -1.6 -4.0 dithiobiotin synthetase compare
Atu3763 -1.6 -2.3 hypothetical protein compare
Atu3298 -1.6 -10.6 C4-dicarboxylate transporter DctA conserved
Atu3290 -1.6 -10.2 phosphomethylpyrimidine kinase compare
Atu4001 -1.6 -7.0 3-oxoacyl-ACP synthase compare
Atu0141 -1.5 -2.0 cytochrome O ubiquinol oxidase subunit I compare
Atu4217 -1.5 -1.2 TetR family transcriptional regulator compare
Atu3296 -1.4 -6.8 two component response regulator for C4-dicarboxylate transport conserved
Atu1455 -1.4 -3.4 hypothetical protein compare
Atu2209 -1.4 -5.4 pyrroline-5-carboxylate reductase compare
Atu0388 -1.4 -8.6 two component sensor kinase compare
Atu2127 -1.3 -7.5 L-carnitine dehydratase compare
Atu2832 -1.3 -4.5 tRNA modification GTPase compare
Atu1457 -1.3 -1.7 hypothetical protein compare
Atu0912 -1.3 -1.4 Na+/H+ antiporter compare
Atu0641 -1.3 -3.9 hypothetical protein compare
Atu1447 -1.3 -3.6 two component sensor kinase compare
Atu4173 -1.3 -3.5 phosphoenolpyruvate-protein phosphotransferase compare
Atu2044 -1.3 -7.4 HFLC protein compare
Atu0769 -1.2 -2.2 protoheme IX farnesyltransferase compare
Atu2682 -1.2 -5.5 hypothetical protein compare
Atu2045 -1.2 -6.2 HFLK protein compare
Atu3297 -1.2 -7.3 two component sensor kinase for C4-dicarboxylate transport compare
Atu1021 -1.1 -3.1 outer membrane protein compare
Atu2831 -1.1 -5.0 glucose inhibited division protein A compare
Atu1225 -1.1 -1.8 hypothetical protein compare
Atu1439 -1.1 -2.0 hypothetical protein compare
Atu0977 -1.1 -4.1 serine protease DO-like protease compare
Atu0188 -1.0 -2.4 ABC transporter, membrane spanning protein (peptide) compare
Atu0590 -1.0 -6.6 transcriptional regulator repressor compare
Atu0346 -1.0 -3.0 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0354 -1.0 -2.3 ferric uptake regulator compare
Atu0368 -1.0 -4.3 tRNA pseudouridine synthase I compare
Atu3910 -1.0 -4.0 LamB/YcsF family protein compare
Atu5164 -1.0 -0.9 type IV secretion protein AvhB3 compare
Atu4317 -1.0 -1.9 TetR family transcriptional regulator compare
Atu0190 -1.0 -6.3 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2827 -1.0 -2.3 hypothetical protein compare
Atu4711 -1.0 -3.7 two component sensor kinase compare
Atu5485 -1.0 -2.3 hypothetical protein compare
Atu1163 -1.0 -2.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2052 -1.0 -5.4 hypothetical protein compare
Atu1851 -0.9 -2.9 BolA/YrbA family protein compare
Atu0086 -0.9 -0.8 ribosome-binding factor A compare
Atu4773 -0.9 -1.8 two component response regulator compare
Atu0845 -0.9 -3.2 hypothetical protein compare
Atu1774 -0.9 -4.4 ABC transporter, substrate binding protein (peptide) compare
Atu3732 -0.9 -5.0 hemolysin compare
Atu2554 -0.9 -2.4 lysyl-tRNA synthetase compare
Atu2489 -0.9 -5.5 hypothetical protein compare
Atu0419 -0.9 -1.8 two component sensor kinase compare
Atu2207 -0.9 -2.1 two component sensor kinase compare
Atu0658 -0.8 -5.4 phosphate permease compare
Atu2239 -0.8 -2.6 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu3628 -0.8 -4.7 hypothetical protein compare
Atu1260 -0.8 -1.5 hypothetical protein compare
Atu6165 -0.8 -0.8 hypothetical protein compare
Atu5057 -0.8 -1.4 hypothetical protein compare
Atu0507 -0.8 -5.8 potassium efflux system protein compare
Atu0031 -0.8 -1.3 PTS system, IIA component compare
Atu1683 -0.7 -1.3 hypothetical protein compare
Atu1546 -0.7 -2.6 transcriptional regulator, MerR family compare
Atu2245 -0.7 -5.4 Na+/Pi-cotransporter compare
Atu0941 -0.7 -0.9 hypothetical protein compare
Atu1445 -0.7 -3.1 two component sensor kinase compare
Atu3727 -0.7 -2.0 hypothetical protein compare
Atu4079 -0.7 -3.0 hypothetical protein compare
Atu0225 -0.7 -0.9 hypothetical protein compare
Atu3295 -0.7 -2.8 hypothetical protein compare
Atu3613 -0.7 -3.5 hypothetical protein compare
Atu0149 -0.7 -2.2 enoyl-(acyl-carrier-protein) reductase compare
Atu5207 -0.7 -2.8 hypothetical protein compare
Atu1847 -0.7 -2.1 hypothetical protein compare
Atu6098 -0.7 -0.5 transcriptional regulator, HTH family compare
Atu3461 -0.7 -2.4 GntR family transcriptional regulator compare
Atu0375 -0.7 -1.4 small heat shock protein compare
Atu3572 -0.7 -5.3 transcriptional regulator compare
Atu3001 -0.6 -1.7 hypothetical protein compare
Atu2798 -0.6 -2.0 precorrin-6y methyltransferase compare
Atu1285 -0.6 -3.9 metal dependent hydrolase compare
Atu3775 -0.6 -2.5 hypothetical protein compare
Atu2803 -0.6 -3.2 Cobalamin biosynthesis associated protein compare
Atu1327 -0.6 -2.4 NADH-ubiquinone oxidoreductase compare
Atu0189 -0.6 -1.5 ABC transporter, membrane spanning protein (peptide) compare
Atu2662 -0.6 -1.3 acetyltransferase compare
Atu1679 -0.6 -1.3 peptidyl prolyl cis-trans isomerase compare
Atu3287 -0.6 -2.0 thiamine biosynthesis associated protein compare
Atu1085 -0.6 -2.5 transcriptional regulator, MarR family compare
Atu2376 -0.6 -0.4 hypothetical protein compare
Atu1513 -0.6 -3.1 ABC excinuclease subunit A compare
Atu1076 -0.6 -2.1 colicin V production protein compare
Atu5142 -0.6 -0.7 hypothetical protein compare
Atu0687 -0.6 -2.0 hypothetical protein compare
Atu3467 -0.6 -2.2 hypothetical protein compare
Atu0510 -0.6 -4.3 pH adaption potassium efflux system protein compare
Atu1810 -0.6 -1.0 hypothetical protein compare
Atu2464 -0.6 -1.8 formyltetrahydrofolate deformylase compare
Atu1891 -0.6 -2.7 cobalamin biosynthesis protein compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Sodium succinate dibasic hexahydrate in Agrobacterium fabrum C58

For carbon source Sodium succinate dibasic hexahydrate across organisms