Experiment set1IT061 for Variovorax sp. OAS795

Compare to:

Sodium Fumarate dibasic carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS16600 -6.2 -7.4 CysB family HTH-type transcriptional regulator compare
ABID97_RS23225 -6.2 -15.6 glutamate synthase-related protein compare
ABID97_RS06575 -6.1 -7.2 trehalose-phosphatase compare
ABID97_RS16595 -5.9 -6.7 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS20615 -5.5 -7.0 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS01565 -5.4 -12.1 DNA starvation/stationary phase protection protein compare
ABID97_RS15380 -4.9 -11.5 nitrite/sulfite reductase compare
ABID97_RS15375 -4.9 -5.5 DUF934 domain-containing protein compare
ABID97_RS05260 -4.8 -2.0 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS15365 -4.6 -5.1 sulfate adenylyltransferase subunit CysD compare
ABID97_RS05250 -4.5 -6.2 anthranilate synthase component I compare
ABID97_RS08425 -4.4 -4.3 tryptophan synthase subunit alpha compare
ABID97_RS16535 -4.4 -8.8 arginine/lysine/ornithine decarboxylase compare
ABID97_RS09180 -4.2 -5.0 DNA polymerase I compare
ABID97_RS25015 -4.2 -2.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS23230 -4.2 -14.1 transposase compare
ABID97_RS15360 -4.1 -8.2 GTP-binding protein compare
ABID97_RS15370 -4.0 -15.1 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS06345 -4.0 -2.7 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS10885 -3.9 -5.9 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS14095 -3.8 -12.8 PAS domain S-box protein compare
ABID97_RS12180 -3.7 -2.5 hypothetical protein compare
ABID97_RS02600 -3.7 -4.4 homoserine O-acetyltransferase compare
ABID97_RS23220 -3.6 -1.9 glutamate synthase subunit beta compare
ABID97_RS07405 -3.6 -11.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS13990 -3.5 -4.7 amino acid aminotransferase compare
ABID97_RS13860 -3.5 -9.5 hypothetical protein compare
ABID97_RS05275 -3.5 -2.4 anthranilate phosphoribosyltransferase compare
ABID97_RS23425 -3.5 -3.3 tRNA-Pro compare
ABID97_RS07000 -3.4 -11.7 threonine ammonia-lyase, biosynthetic compare
ABID97_RS26600 -3.4 -4.9 ATP-binding protein compare
ABID97_RS17635 -3.3 -5.5 presqualene diphosphate synthase HpnD compare
ABID97_RS23455 -3.0 -4.1 hypothetical protein compare
ABID97_RS02510 -2.9 -22.4 NADP-dependent malic enzyme compare
ABID97_RS23450 -2.9 -4.4 MBOAT family protein compare
ABID97_RS08775 -2.9 -2.7 ribosome small subunit-dependent GTPase A compare
ABID97_RS15665 -2.8 -8.0 [protein-PII] uridylyltransferase compare
ABID97_RS05280 -2.8 -1.9 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS21150 -2.8 -13.5 FAD-dependent oxidoreductase compare
ABID97_RS05370 -2.8 -5.6 ATP-binding protein compare
ABID97_RS14160 -2.8 -8.4 cell division protein ZapE compare
ABID97_RS08435 -2.8 -1.9 phosphoribosylanthranilate isomerase compare
ABID97_RS03910 -2.8 -1.9 orotate phosphoribosyltransferase compare
ABID97_RS15465 -2.8 -11.6 sulfate ABC transporter substrate-binding protein compare
ABID97_RS03680 -2.7 -8.7 lysophospholipid transporter LplT compare
ABID97_RS06365 -2.7 -2.3 TlpA disulfide reductase family protein compare
ABID97_RS07430 -2.7 -10.4 pantoate--beta-alanine ligase compare
ABID97_RS05755 -2.6 -2.5 glycosyltransferase compare
ABID97_RS05750 -2.6 -2.5 glycosyltransferase compare
ABID97_RS06460 -2.6 -1.8 sigma 54-interacting transcriptional regulator compare
ABID97_RS07775 -2.6 -4.3 phosphoribosylglycinamide formyltransferase compare
ABID97_RS03800 -2.6 -2.5 O-antigen ligase family protein compare
ABID97_RS04505 -2.6 -2.4 ferric iron uptake transcriptional regulator compare
ABID97_RS04500 -2.5 -1.7 HPr(Ser) kinase/phosphatase compare
ABID97_RS05365 -2.5 -4.4 DUF4390 domain-containing protein compare
ABID97_RS17850 -2.5 -1.3 tetratricopeptide repeat protein compare
ABID97_RS08445 -2.3 -11.7 FimV/HubP family polar landmark protein compare
ABID97_RS08710 -2.3 -7.5 polynucleotide adenylyltransferase PcnB compare
ABID97_RS00255 -2.2 -15.2 type IV pilus twitching motility protein PilT compare
ABID97_RS03805 -2.2 -1.8 ATP-binding protein compare
ABID97_RS05765 -2.2 -3.0 UDP-glucose 4-epimerase GalE compare
ABID97_RS06275 -2.2 -2.0 crossover junction endodeoxyribonuclease RuvC compare
ABID97_RS07410 -2.2 -8.5 carboxylating nicotinate-nucleotide diphosphorylase compare
ABID97_RS02455 -2.2 -4.0 nucleotidyltransferase family protein compare
ABID97_RS06450 -2.1 -2.5 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS08480 -2.1 -1.4 citrate synthase compare
ABID97_RS19375 -2.1 -5.9 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
ABID97_RS17590 -2.0 -11.7 endopeptidase La compare
ABID97_RS26605 -2.0 -2.7 sigma-54 dependent transcriptional regulator compare
ABID97_RS02135 -1.9 -8.8 GspH/FimT family pseudopilin compare
ABID97_RS24920 -1.9 -1.8 Holliday junction branch migration protein RuvA compare
ABID97_RS07435 -1.9 -6.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS27235 -1.8 -1.8 hypothetical protein compare
ABID97_RS14090 -1.8 -1.7 response regulator transcription factor compare
ABID97_RS26530 -1.8 -6.5 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABID97_RS10705 -1.7 -3.5 H-NS histone family protein compare
ABID97_RS07415 -1.7 -10.1 quinolinate synthase NadA compare
ABID97_RS03915 -1.7 -5.9 DUF4124 domain-containing protein compare
ABID97_RS07440 -1.7 -8.1 L-aspartate oxidase compare
ABID97_RS28990 -1.7 -4.0 aspartate 1-decarboxylase compare
ABID97_RS23440 -1.7 -8.9 A24 family peptidase compare
ABID97_RS02110 -1.7 -11.9 type IV pilus modification protein PilV compare
ABID97_RS02125 -1.7 -13.8 PilC/PilY family type IV pilus protein compare
ABID97_RS02115 -1.6 -7.8 PilW family protein compare
ABID97_RS23430 -1.6 -8.3 type IV-A pilus assembly ATPase PilB compare
ABID97_RS23915 -1.6 -4.0 heme o synthase compare
ABID97_RS23270 -1.6 -9.0 pilus assembly protein PilP compare
ABID97_RS15995 -1.6 -5.7 PilZ domain-containing protein compare
ABID97_RS06520 -1.6 -1.8 SAM-dependent methyltransferase compare
ABID97_RS12140 -1.6 -6.6 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS07500 -1.6 -2.2 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS08430 -1.6 -1.8 tryptophan synthase subunit beta compare
ABID97_RS22705 -1.6 -7.8 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS08220 -1.6 -9.1 phosphoenolpyruvate carboxylase compare
ABID97_RS27720 -1.5 -2.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit compare
ABID97_RS06175 -1.5 -12.0 STAS domain-containing protein compare
ABID97_RS15490 -1.5 -7.6 FMNH2-dependent alkanesulfonate monooxygenase compare
ABID97_RS02140 -1.5 -8.2 sugar transferase compare
ABID97_RS24705 -1.5 -5.2 response regulator compare
ABID97_RS24170 -1.5 -5.7 ATP-binding protein compare
ABID97_RS23935 -1.5 -1.8 twin transmembrane helix small protein compare
ABID97_RS15470 -1.5 -3.2 NADPH-dependent FMN reductase compare
ABID97_RS23435 -1.5 -11.7 type II secretion system F family protein compare
ABID97_RS08440 -1.5 -4.0 tRNA pseudouridine(38-40) synthase TruA compare
ABID97_RS08680 -1.5 -2.0 helix-turn-helix domain-containing protein compare
ABID97_RS02120 -1.5 -7.9 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS02145 -1.5 -7.3 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS13865 -1.5 -3.9 hypothetical protein compare
ABID97_RS02130 -1.5 -8.5 type IV pilin protein compare
ABID97_RS27140 -1.5 -1.8 winged helix-turn-helix domain-containing protein compare
ABID97_RS16690 -1.5 -5.2 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS26535 -1.5 -1.8 dihydrolipoyllysine-residue acetyltransferase compare
ABID97_RS04480 -1.5 -2.5 magnesium/cobalt transporter CorA compare
ABID97_RS04765 -1.4 -1.6 thiol:disulfide interchange protein DsbA/DsbL compare
ABID97_RS05020 -1.4 -1.5 hypothetical protein compare
ABID97_RS09935 -1.4 -6.2 hypothetical protein compare
ABID97_RS17895 -1.4 -6.3 transcriptional regulator NrdR compare
ABID97_RS17265 -1.4 -3.8 two-component system response regulator OmpR compare
ABID97_RS09595 -1.4 -1.4 Arc family DNA-binding protein compare
ABID97_RS09940 -1.4 -4.9 nitrogen regulation protein NR(II) compare
ABID97_RS25525 -1.4 -4.1 LacI family DNA-binding transcriptional regulator compare
ABID97_RS20610 -1.4 -4.9 DNA-binding protein YbiB compare
ABID97_RS28000 -1.4 -1.1 NADPH-dependent FMN reductase compare
ABID97_RS01840 -1.4 -10.1 DUF1631 family protein compare
ABID97_RS01650 -1.4 -1.3 orotidine-5'-phosphate decarboxylase compare
ABID97_RS24045 -1.3 -3.6 type II toxin-antitoxin system prevent-host-death family antitoxin compare
ABID97_RS26160 -1.3 -1.3 nuclear transport factor 2 family protein compare
ABID97_RS26550 -1.3 -2.8 NADP-dependent malic enzyme compare
ABID97_RS10295 -1.3 -1.3 winged helix-turn-helix transcriptional regulator compare
ABID97_RS26540 -1.3 -2.8 dihydrolipoyl dehydrogenase compare
ABID97_RS19380 -1.3 -3.3 2-methylcitrate synthase compare
ABID97_RS03110 -1.3 -6.3 helix-turn-helix transcriptional regulator compare
ABID97_RS23380 -1.3 -8.4 lytic transglycosylase domain-containing protein compare
ABID97_RS01825 -1.3 -8.1 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS16050 -1.3 -1.4 isochorismatase family cysteine hydrolase compare
ABID97_RS25085 -1.2 -2.3 2-hydroxychromene-2-carboxylate isomerase compare
ABID97_RS06415 -1.2 -8.1 sigma-54 dependent transcriptional regulator compare
ABID97_RS06160 -1.2 -5.6 GTP-binding protein compare
ABID97_RS23650 -1.2 -9.1 serine/threonine-protein kinase compare
ABID97_RS16470 -1.2 -1.6 translational GTPase TypA compare
ABID97_RS04885 -1.2 -7.8 YbdK family carboxylate-amine ligase compare
ABID97_RS02605 -1.2 -8.0 TMEM165/GDT1 family protein compare
ABID97_RS08250 -1.2 -6.5 RluA family pseudouridine synthase compare
ABID97_RS16695 -1.2 -8.7 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS15580 -1.2 -5.1 sulfate ABC transporter permease subunit CysW compare
ABID97_RS02460 -1.2 -9.8 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS25405 -1.2 -7.0 16S ribosomal RNA compare
ABID97_RS04960 -1.2 -0.9 ATP-binding protein compare
ABID97_RS24690 -1.2 -6.1 methyl-accepting chemotaxis protein compare
ABID97_RS17970 -1.2 -3.7 protein TolQ compare
ABID97_RS18205 -1.2 -2.0 XRE family transcriptional regulator compare
ABID97_RS25345 -1.2 -4.7 transporter associated domain-containing protein compare
ABID97_RS01105 -1.1 -1.5 AMP-binding protein compare
ABID97_RS02200 -1.1 -9.5 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABID97_RS19220 -1.1 -1.5 DNA polymerase Y family protein compare
ABID97_RS14100 -1.1 -7.3 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABID97_RS19350 -1.1 -4.2 group 1 truncated hemoglobin compare
ABID97_RS06095 -1.1 -6.6 MBL fold metallo-hydrolase compare
ABID97_RS21165 -1.1 -3.1 energy-dependent translational throttle protein EttA compare
ABID97_RS27635 -1.1 -0.9 NAD(P)H-dependent oxidoreductase compare
ABID97_RS02210 -1.1 -6.7 pilin compare
ABID97_RS13450 -1.1 -2.1 TetR/AcrR family transcriptional regulator compare
ABID97_RS16785 -1.1 -2.0 transporter compare
ABID97_RS22030 -1.1 -4.9 DEAD/DEAH box helicase compare
ABID97_RS10720 -1.1 -2.9 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABID97_RS15480 -1.1 -5.1 sulfonate ABC transporter substrate-binding protein compare
ABID97_RS10695 -1.1 -5.0 YbhB/YbcL family Raf kinase inhibitor-like protein compare
ABID97_RS08350 -1.1 -7.5 translation elongation factor 4 compare
ABID97_RS23790 -1.1 -4.7 ATP-binding cassette domain-containing protein compare
ABID97_RS06315 -1.1 -7.8 YqiA/YcfP family alpha/beta fold hydrolase compare
ABID97_RS15085 -1.1 -2.3 hypothetical protein compare
ABID97_RS06150 -1.1 -4.6 tyrosine recombinase XerC compare
ABID97_RS15495 -1.0 -3.0 aliphatic sulfonate ABC transporter permease SsuC compare
ABID97_RS17270 -1.0 -5.1 ATP-binding protein compare
ABID97_RS19065 -1.0 -2.6 GntR family transcriptional regulator compare
ABID97_RS14200 -1.0 -4.5 pseudouridine synthase compare
ABID97_RS19550 -1.0 -1.2 phosphatase PAP2 family protein compare
ABID97_RS14105 -1.0 -1.9 dihydrolipoyllysine-residue acetyltransferase compare
ABID97_RS24370 -1.0 -2.5 DUF1841 family protein compare
ABID97_RS20980 -1.0 -1.1 transcriptional repressor compare
ABID97_RS04890 -1.0 -3.6 cation:proton antiporter compare
ABID97_RS14625 -1.0 -3.0 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS04740 -1.0 -1.3 DUF2214 family protein compare
ABID97_RS11545 -1.0 -1.0 branched-chain amino acid ABC transporter permease compare
ABID97_RS23285 -1.0 -6.3 pilus assembly protein PilM compare
ABID97_RS18255 -1.0 -1.4 hypothetical protein compare
ABID97_RS01725 -1.0 -1.1 META domain-containing protein compare
ABID97_RS25900 -1.0 -2.0 ABC transporter permease compare
ABID97_RS23275 -1.0 -5.6 type 4a pilus biogenesis protein PilO compare
ABID97_RS04760 -1.0 -1.1 SPOR domain-containing protein compare
ABID97_RS14115 -1.0 -3.9 dihydrolipoyl dehydrogenase compare
ABID97_RS11235 -1.0 -2.6 NAD-dependent succinate-semialdehyde dehydrogenase compare
ABID97_RS08365 -1.0 -2.4 ribonuclease III compare
ABID97_RS25125 -1.0 -5.4 enoyl-CoA hydratase/isomerase family protein compare
ABID97_RS16920 -1.0 -6.3 NADP-dependent isocitrate dehydrogenase compare
ABID97_RS18445 -1.0 -1.3 helix-turn-helix transcriptional regulator compare
ABID97_RS03015 -0.9 -1.3 hotdog fold thioesterase compare
ABID97_RS24390 -0.9 -4.8 c-type cytochrome compare
ABID97_RS24055 -0.9 -1.6 TetR/AcrR family transcriptional regulator compare
ABID97_RS15575 -0.9 -3.4 sulfate ABC transporter permease subunit CysT compare


Specific Phenotypes

None in this experiment

For Variovorax sp. OAS795 in carbon source experiments

For carbon source Sodium Fumarate dibasic across organisms