Experiment set1IT060 for Pseudomonas sp. RS175

Compare to:

Inosine carbon 10 mM

200 most detrimental genes:

  gene name fitness t score description  
PFR28_03704 +10.6 51.5 hypothetical protein compare
PFR28_00918 +9.5 69.2 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
PFR28_02736 +8.6 34.8 Arabinose import ATP-binding protein AraG compare
PFR28_00560 +8.6 69.4 Glyceraldehyde-3-phosphate dehydrogenase 1 compare
PFR28_02484 +8.3 67.7 UTP--glucose-1-phosphate uridylyltransferase compare
PFR28_00106 +8.0 38.5 Tagatose-6-phosphate kinase compare
PFR28_02735 +7.8 44.9 Ribose import permease protein RbsC compare
PFR28_04110 +7.8 66.3 Malate synthase G compare
PFR28_02737 +7.7 25.7 Ribose import binding protein RbsB compare
PFR28_00633 +7.2 54.4 HTH-type transcriptional regulator TtgR compare
PFR28_01043 +7.1 22.5 hypothetical protein compare
PFR28_04830 +6.9 60.5 Phosphoenolpyruvate-dependent phosphotransferase system compare
PFR28_03125 +6.7 60.1 putative 3-phenylpropionic acid transporter compare
PFR28_00928 +6.5 23.0 putative sugar transferase EpsL compare
PFR28_03423 +6.4 53.1 Porin D compare
PFR28_03714 +6.3 57.7 RNA polymerase-binding transcription factor DksA compare
PFR28_00104 +6.3 43.5 Catabolite repressor/activator compare
PFR28_04485 +6.2 9.5 Phosphate-specific transport system accessory protein PhoU compare
PFR28_00927 +5.2 39.7 D-inositol-3-phosphate glycosyltransferase compare
PFR28_00296 +5.2 4.6 Cytoskeleton protein RodZ compare
PFR28_00930 +5.2 30.5 GDP-perosamine synthase compare
PFR28_05071 +5.1 37.4 D-inositol-3-phosphate glycosyltransferase compare
PFR28_01119 +5.1 33.4 Beta-hexosaminidase compare
PFR28_04345 +4.9 44.8 Polyphosphate kinase compare
PFR28_03223 +4.7 24.4 GTP pyrophosphokinase compare
PFR28_03723 +4.7 9.9 Aspartate 1-decarboxylase compare
PFR28_00913 +4.7 24.3 Integration host factor subunit beta compare
PFR28_05075 +4.6 38.8 hypothetical protein compare
PFR28_00917 +4.4 34.9 UDP-N-acetyl-D-mannosamine dehydrogenase compare
PFR28_02719 +4.4 17.7 Integration host factor subunit alpha compare
PFR28_00926 +4.4 8.4 hypothetical protein compare
PFR28_02733 +4.4 10.8 Ribokinase compare
PFR28_03224 +4.2 15.7 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PFR28_00916 +4.2 36.1 UDP-N-acetylglucosamine 2-epimerase compare
PFR28_04831 +4.1 14.3 RNA pyrophosphohydrolase compare
PFR28_01410 +4.1 33.0 Response regulator GacA compare
PFR28_00169 +4.1 15.3 Phosphocarrier protein NPr compare
PFR28_01709 +3.9 28.0 Polyol:NADP oxidoreductase compare
PFR28_04633 +3.7 14.9 Alginate biosynthesis sensor protein KinB compare
PFR28_01091 +3.7 33.6 Cbb3-type cytochrome c oxidase subunit CcoN1 conserved
PFR28_03227 +3.7 21.5 Signal transduction histidine-protein kinase BarA compare
PFR28_03846 +3.6 17.8 hypothetical protein compare
PFR28_01088 +3.5 24.7 Cbb3-type cytochrome c oxidase subunit CcoP2 conserved
PFR28_04436 +3.5 27.5 hypothetical protein compare
PFR28_01090 +3.3 21.6 hypothetical protein compare
PFR28_00156 +3.0 3.2 Rod shape-determining protein MreD compare
PFR28_05079 +3.0 21.7 hypothetical protein compare
PFR28_03869 +3.0 2.9 Ribosomal RNA large subunit methyltransferase H compare
PFR28_03387 +2.7 7.7 hypothetical protein compare
PFR28_04233 +2.6 12.8 hypothetical protein compare
PFR28_05062 +2.6 14.8 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme compare
PFR28_01527 +2.6 5.3 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PFR28_03748 +2.6 14.3 Ribosomal large subunit pseudouridine synthase D compare
PFR28_04904 +2.5 19.0 HTH-type transcriptional regulator HdfR compare
PFR28_04939 +2.5 13.3 putative protein YibN compare
PFR28_01037 +2.3 13.6 Phosphoenolpyruvate synthase regulatory protein compare
PFR28_00277 +2.3 7.2 Queuine tRNA-ribosyltransferase compare
PFR28_03066 +2.2 4.4 Adaptive-response sensory-kinase SasA compare
PFR28_00405 +2.2 2.9 hypothetical protein compare
PFR28_03137 +2.2 19.0 Adenine permease AdeQ conserved
PFR28_03729 +2.1 2.4 hypothetical protein compare
PFR28_03640 +2.1 13.0 Hypoxanthine-guanine phosphoribosyltransferase compare
PFR28_01553 +2.1 11.2 hypothetical protein compare
PFR28_00932 +2.1 19.6 UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase compare
PFR28_01084 +2.1 8.0 hypothetical protein compare
PFR28_03721 +2.0 10.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFR28_04903 +2.0 11.3 hypothetical protein compare
PFR28_03147 +2.0 17.1 hypothetical protein compare
PFR28_03549 +2.0 4.4 Molybdopterin synthase catalytic subunit compare
PFR28_04902 +2.0 12.5 Inner membrane protein YgaZ compare
PFR28_04647 +2.0 12.0 hypothetical protein compare
PFR28_04834 +1.9 16.6 L-threonine dehydratase biosynthetic IlvA compare
PFR28_01031 +1.9 5.5 Sensor protein QseC compare
PFR28_04900 +1.8 15.3 hypothetical protein compare
PFR28_05070 +1.8 3.6 nebramycin 5 compare
PFR28_01600 +1.8 2.8 HTH-type transcriptional regulator KdgR compare
PFR28_03000 +1.8 9.9 'GTP 3',8-cyclase' transl_table=11 compare
PFR28_03079 +1.7 13.9 Sensor histidine kinase RcsC compare
PFR28_00427 +1.7 14.9 RNA polymerase sigma factor RpoS compare
PFR28_02703 +1.7 4.0 hypothetical protein compare
PFR28_01123 +1.7 15.5 Transcription-repair-coupling factor compare
PFR28_01150 +1.7 1.9 hypothetical protein compare
PFR28_04030 +1.7 12.9 hypothetical protein compare
PFR28_04423 +1.7 4.4 DNA-directed RNA polymerase subunit omega compare
PFR28_05244 +1.7 13.7 Copper-exporting P-type ATPase compare
PFR28_03146 +1.7 9.3 Ureidoglycolate lyase compare
PFR28_02727 +1.7 3.9 Cold shock protein CapB compare
PFR28_03635 +1.6 7.4 Malate:quinone oxidoreductase compare
PFR28_02496 +1.6 8.4 Molybdate-binding protein ModA compare
PFR28_01270 +1.6 7.7 hypothetical protein compare
PFR28_03298 +1.6 11.0 Nucleoid occlusion factor SlmA compare
PFR28_00983 +1.6 9.5 Protease HtpX compare
PFR28_00105 +1.6 4.2 hypothetical protein compare
PFR28_01064 +1.6 11.7 hypothetical protein conserved
PFR28_03551 +1.6 7.7 Cyclic pyranopterin monophosphate synthase compare
PFR28_02734 +1.5 3.7 Ribose operon repressor compare
PFR28_00434 +1.5 3.2 hypothetical protein compare
PFR28_00403 +1.5 6.7 Regulator of sigma-E protease RseP compare
PFR28_03386 +1.5 5.1 Major cold shock protein CspA compare
PFR28_03077 +1.5 13.7 Vitamin B12 transporter BtuB compare
PFR28_01109 +1.5 4.5 hypothetical protein compare
PFR28_01181 +1.5 4.5 hypothetical protein compare
PFR28_01005 +1.5 7.5 Molybdenum cofactor biosynthesis protein B compare
PFR28_00966 +1.4 10.1 HTH-type transcriptional regulator CysB compare
PFR28_01063 +1.4 12.5 putative xanthine dehydrogenase subunit D conserved
PFR28_00276 +1.4 6.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PFR28_03612 +1.4 5.2 Cell division protein ZapE compare
PFR28_02497 +1.4 10.0 Molybdenum transport system permease protein ModB compare
PFR28_03142 +1.4 3.5 5-hydroxyisourate hydrolase compare
PFR28_05000 +1.4 2.3 Cell division protein FtsN compare
PFR28_01060 +1.3 4.7 HTH-type transcriptional repressor NanR compare
PFR28_02726 +1.3 3.3 hypothetical protein compare
PFR28_05077 +1.3 7.7 D-inositol-3-phosphate glycosyltransferase compare
PFR28_02131 +1.3 3.6 Response regulator protein TmoT compare
PFR28_00429 +1.3 7.9 DNA mismatch repair protein MutS compare
PFR28_01146 +1.3 3.0 hypothetical protein compare
PFR28_03130 +1.3 2.7 Streptothricin hydrolase compare
PFR28_01391 +1.3 2.2 Peptidyl-prolyl cis-trans isomerase C compare
PFR28_05119 +1.3 7.6 DNA mismatch repair protein MutL compare
PFR28_04992 +1.2 2.2 hypothetical protein compare
PFR28_00873 +1.2 7.0 hypothetical protein compare
PFR28_03615 +1.2 7.1 hypothetical protein compare
PFR28_05078 +1.2 2.3 hypothetical protein compare
PFR28_05118 +1.2 3.3 N-acetylmuramoyl-L-alanine amidase AmiC compare
PFR28_03784 +1.2 7.1 Energy-dependent translational throttle protein EttA compare
PFR28_03016 +1.2 6.3 hypothetical protein compare
PFR28_01062 +1.2 6.9 hypothetical protein conserved
PFR28_00900 +1.2 4.5 N-acetylmuramic acid 6-phosphate phosphatase compare
PFR28_01148 +1.2 3.3 hypothetical protein compare
PFR28_02846 +1.1 6.0 Adaptive-response sensory-kinase SasA compare
PFR28_02268 +1.1 1.9 hypothetical protein compare
PFR28_04626 +1.1 2.5 hypothetical protein compare
PFR28_02788 +1.1 1.9 hypothetical protein compare
PFR28_03232 +1.1 2.9 putative protein YfgD compare
PFR28_03350 +1.1 3.4 hypothetical protein compare
PFR28_00480 +1.1 3.7 HTH-type transcriptional activator CmpR compare
PFR28_01006 +1.1 6.4 Molybdopterin molybdenumtransferase compare
PFR28_03891 +1.1 7.7 Protein DedA compare
PFR28_00261 +1.1 2.3 hypothetical protein compare
PFR28_01144 +1.1 4.6 hypothetical protein compare
PFR28_04299 +1.0 1.8 hypothetical protein compare
PFR28_03082 +1.0 1.7 hypothetical protein compare
PFR28_00602 +1.0 1.1 hypothetical protein compare
PFR28_01152 +1.0 4.8 hypothetical protein compare
PFR28_01935 +1.0 1.2 Putative aldehyde dehydrogenase compare
PFR28_04108 +1.0 7.1 Protein RarD compare
PFR28_02678 +1.0 1.5 hypothetical protein compare
PFR28_00813 +1.0 6.5 CDP-glucose 4,6-dehydratase compare
PFR28_03138 +1.0 5.0 Homoserine/homoserine lactone efflux protein compare
PFR28_04556 +1.0 3.9 hypothetical protein compare
PFR28_04866 +1.0 1.9 1,4-dihydroxy-2-naphthoyl-CoA hydrolase compare
PFR28_03346 +1.0 3.4 Ion-translocating oxidoreductase complex subunit D compare
PFR28_02243 +1.0 2.5 putative ABC transporter ATP-binding protein NosF compare
PFR28_01315 +1.0 1.9 hypothetical protein compare
PFR28_02215 +1.0 2.6 Molybdopterin molybdenumtransferase compare
PFR28_02357 +1.0 1.7 Bicyclomycin resistance protein compare
PFR28_03831 +0.9 1.6 hypothetical protein compare
PFR28_04128 +0.9 1.6 Cold shock-like protein CspA compare
PFR28_05104 +0.9 2.7 hypothetical protein compare
PFR28_00184 +0.9 2.9 hypothetical protein compare
PFR28_04420 +0.9 6.1 Ribonuclease PH compare
PFR28_03657 +0.9 3.6 Beta-barrel assembly-enhancing protease compare
PFR28_00285 +0.9 2.2 HTH-type transcriptional regulator IscR compare
PFR28_03851 +0.9 4.7 Magnesium and cobalt efflux protein CorC compare
PFR28_04481 +0.9 5.8 hypothetical protein compare
PFR28_03391 +0.9 1.8 Copper resistance protein C compare
PFR28_03425 +0.9 2.0 hypothetical protein compare
PFR28_01656 +0.9 2.0 hypothetical protein compare
PFR28_03650 +0.9 1.6 hypothetical protein compare
PFR28_04242 +0.9 4.1 Pyridoxal phosphate homeostasis protein compare
PFR28_03749 +0.9 1.9 Outer membrane protein assembly factor BamD compare
PFR28_02201 +0.9 1.6 Chaperone SurA compare
PFR28_05123 +0.9 3.6 Modulator of FtsH protease HflK compare
PFR28_00915 +0.9 3.5 Chain length determinant protein compare
PFR28_01720 +0.9 2.3 Chemotaxis protein methyltransferase compare
PFR28_00961 +0.9 7.1 hypothetical protein compare
PFR28_00844 +0.9 1.1 hypothetical protein compare
PFR28_01269 +0.9 4.2 Putrescine importer PuuP compare
PFR28_05176 +0.9 1.4 Chaperone modulatory protein CbpM compare
PFR28_00924 +0.9 2.9 hypothetical protein compare
PFR28_00095 +0.9 0.9 tRNA-Thr compare
PFR28_04978 +0.8 4.2 Glucans biosynthesis protein G compare
PFR28_01981 +0.8 3.0 hypothetical protein compare
PFR28_02704 +0.8 1.0 hypothetical protein compare
PFR28_04068 +0.8 7.0 hypothetical protein compare
PFR28_00728 +0.8 5.0 5-oxoprolinase subunit A 3 compare
PFR28_05115 +0.8 5.7 Epoxyqueuosine reductase compare
PFR28_04048 +0.8 5.4 Phosphoglycolate phosphatase compare
PFR28_04144 +0.8 1.5 hypothetical protein compare
PFR28_05068 +0.8 2.3 hypothetical protein compare
PFR28_00601 +0.8 1.6 hypothetical protein compare
PFR28_02035 +0.8 3.6 putative oxidoreductase compare
PFR28_04335 +0.8 3.4 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PFR28_00267 +0.8 1.7 Protein rof compare
PFR28_05124 +0.8 2.4 Modulator of FtsH protease HflC compare
PFR28_05160 +0.8 0.8 hypothetical protein compare
PFR28_03404 +0.8 3.1 7-carboxy-7-deazaguanine synthase compare
PFR28_05182 +0.8 2.3 Urease accessory protein UreD compare
PFR28_01151 +0.8 2.4 hypothetical protein compare
PFR28_02129 +0.8 2.3 HTH-type transcriptional regulator CdhR compare


Specific Phenotypes

For 24 genes in this experiment

For carbon source Inosine in Pseudomonas sp. RS175

For carbon source Inosine across organisms