Experiment set1IT060 for Enterobacter asburiae PDN3

Compare to:

M9 with casamino acids and trichloroethylene 76.3 uM

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_4544 -5.7 -2.0 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_0038 -5.4 -3.1 K+ transport systems, NAD-binding component compare
EX28DRAFT_2252 -4.3 -2.9 TolA protein compare
EX28DRAFT_2265 -4.2 -2.8 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_0292 -4.2 -4.0 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_3419 -4.0 -14.5 Fructose-1,6-bisphosphatase compare
EX28DRAFT_4271 -3.9 -1.3 glycerol-3-phosphate acyltransferase (EC 2.3.1.15) compare
EX28DRAFT_3285 -3.7 -6.8 malate dehydrogenase (NAD) (EC 1.1.1.37) compare
EX28DRAFT_4153 -3.6 -4.5 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_0933 -3.5 -12.0 tryptophan synthase, beta subunit compare
EX28DRAFT_0046 -3.5 -5.6 shikimate dehydrogenase compare
EX28DRAFT_0769 -3.4 -1.6 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF compare
EX28DRAFT_2027 -3.2 -7.4 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_0934 -3.2 -12.2 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_2270 -3.1 -1.5 succinate dehydrogenase subunit C (EC 1.3.5.1) compare
EX28DRAFT_0331 -3.0 -4.3 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_2425 -2.9 -1.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2958 -2.9 -1.4 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_0328 -2.9 -2.1 NADH:ubiquinone oxidoreductase subunit 1 (chain H) compare
EX28DRAFT_2267 -2.9 -6.5 succinate dehydrogenase and fumarate reductase iron-sulfur protein compare
EX28DRAFT_2531 -2.9 -5.2 endopeptidase La compare
EX28DRAFT_0935 -2.8 -7.9 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
EX28DRAFT_3336 -2.7 -12.4 aspartate ammonia-lyase compare
EX28DRAFT_2269 -2.7 -6.8 succinate dehydrogenase, hydrophobic membrane anchor protein compare
EX28DRAFT_0932 -2.6 -4.7 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
EX28DRAFT_3646 -2.6 -5.3 4-hydroxythreonine-4-phosphate dehydrogenase compare
EX28DRAFT_0324 -2.6 -3.7 NADH-quinone oxidoreductase, E subunit compare
EX28DRAFT_4507 -2.5 -5.5 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
EX28DRAFT_3710 -2.5 -5.9 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_0291 -2.4 -4.2 Uncharacterized membrane protein, required for colicin V production compare
EX28DRAFT_3647 -2.4 -5.1 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_0936 -2.3 -4.3 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_0092 -2.3 -2.4 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_2264 -2.3 -8.5 succinyl-CoA synthetase, beta subunit compare
EX28DRAFT_3711 -2.3 -1.8 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_2268 -2.2 -6.8 succinate dehydrogenase subunit A (EC 1.3.5.1) compare
EX28DRAFT_2263 -2.2 -4.1 succinyl-CoA synthetase, alpha subunit compare
EX28DRAFT_0321 -2.2 -1.2 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
EX28DRAFT_1706 -2.2 -8.2 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
EX28DRAFT_0545 -2.1 -4.0 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_0334 -2.1 -2.5 proton-translocating NADH-quinone oxidoreductase, chain N compare
EX28DRAFT_0167 -2.1 -2.4 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
EX28DRAFT_4156 -2.1 -2.8 ribulose-phosphate 3-epimerase compare
EX28DRAFT_0706 -2.1 -3.2 Entner-Doudoroff aldolase compare
EX28DRAFT_4318 -2.0 -4.3 Glucose-6-phosphate isomerase compare
EX28DRAFT_3879 -2.0 -3.8 Glycosyltransferase compare
EX28DRAFT_0494 -2.0 -1.5 Protein-tyrosine-phosphatase compare
EX28DRAFT_2046 -2.0 -2.8 thiol reductant ABC exporter, CydC subunit compare
EX28DRAFT_0284 -2.0 -8.4 Phosphoglycerate dehydrogenase and related dehydrogenases compare
EX28DRAFT_0125 -1.9 -1.1 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_3449 -1.9 -2.1 Predicted membrane protein compare
EX28DRAFT_0329 -1.8 -5.7 NADH-quinone oxidoreductase, chain I compare
EX28DRAFT_0333 -1.8 -6.2 proton-translocating NADH-quinone oxidoreductase, chain M compare
EX28DRAFT_3675 -1.7 -7.2 transcriptional regulator, LacI family compare
EX28DRAFT_0332 -1.7 -10.0 proton-translocating NADH-quinone oxidoreductase, chain L compare
EX28DRAFT_2008 -1.6 -7.0 Aspartate/tyrosine/aromatic aminotransferase compare
EX28DRAFT_4350 -1.6 -1.3 nitrogen regulation protein NR(I) compare
EX28DRAFT_2541 -1.6 -1.5 cytochrome o ubiquinol oxidase, subunit III compare
EX28DRAFT_0323 -1.6 -6.4 NADH (or F420H2) dehydrogenase, subunit C compare
EX28DRAFT_4341 -1.6 -3.4 Protein-disulfide isomerase compare
EX28DRAFT_0972 -1.6 -1.5 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_0322 -1.5 -7.5 NADH-quinone oxidoreductase, B subunit compare
EX28DRAFT_0325 -1.5 -6.2 NADH-quinone oxidoreductase, F subunit compare
EX28DRAFT_0111 -1.5 -2.3 FeS cluster assembly scaffold IscU compare
EX28DRAFT_1497 -1.5 -1.5 hypothetical protein compare
EX28DRAFT_4152 -1.5 -1.3 shikimate kinase (EC 2.7.1.71) compare
EX28DRAFT_0330 -1.5 -2.9 NADH:ubiquinone oxidoreductase subunit 6 (chain J) compare
EX28DRAFT_4297 -1.5 -1.2 cell division ATP-binding protein FtsE compare
EX28DRAFT_2948 -1.4 -3.7 Uncharacterized conserved protein compare
EX28DRAFT_3426 -1.4 -1.4 conserved hypothetical protein EF_0831/AHA_3912 compare
EX28DRAFT_0531 -1.4 -5.5 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_2259 -1.4 -3.5 Cytochrome bd-type quinol oxidase, subunit 1 compare
EX28DRAFT_0001 -1.4 -3.1 Elongation factor Tu domain 2/Elongation factor Tu C-terminal domain compare
EX28DRAFT_0861 -1.4 -7.3 Response regulator receiver domain compare
EX28DRAFT_1609 -1.4 -8.8 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region/hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region compare
EX28DRAFT_0327 -1.4 -4.7 NADH-quinone oxidoreductase, chain G compare
EX28DRAFT_2945 -1.4 -1.8 tyrosine recombinase XerD compare
EX28DRAFT_0778 -1.4 -1.0 hypothetical protein compare
EX28DRAFT_2250 -1.3 -2.6 peptidoglycan-associated lipoprotein compare
EX28DRAFT_4184 -1.3 -0.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4123 -1.3 -3.3 transcriptional regulator, DeoR family compare
EX28DRAFT_3079 -1.3 -0.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3315 -1.3 -1.1 Protein of unknown function (DUF2556) compare
EX28DRAFT_4475 -1.3 -3.7 Adenylate cyclase compare
EX28DRAFT_0132 -1.3 -4.5 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_1396 -1.2 -1.0 Amidases related to nicotinamidase compare
EX28DRAFT_1839 -1.2 -4.7 phosphate:acyl-[acyl carrier protein] acyltransferase compare
EX28DRAFT_2873 -1.2 -1.2 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0081 -1.2 -4.4 DNA replication and repair protein RecO compare
EX28DRAFT_1692 -1.2 -1.2 Biofilm development protein YmgB/AriR compare
EX28DRAFT_4541 -1.2 -2.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2214 -1.2 -1.8 malonyl-acyl carrier protein O-methyltransferase BioC compare
EX28DRAFT_0593 -1.2 -8.8 DNA-methyltransferase (dcm) compare
EX28DRAFT_0970 -1.2 -4.5 ABC-type antimicrobial peptide transport system, ATPase component compare
EX28DRAFT_3507 -1.2 -1.1 Response regulator compare
EX28DRAFT_3252 -1.1 -2.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family compare
EX28DRAFT_0713 -1.1 -2.8 Uncharacterized protein, homolog of Cu resistance protein CopC compare
EX28DRAFT_2492 -1.1 -2.3 Protein of unknown function (DUF2496) compare
EX28DRAFT_2424 -1.1 -2.6 transcriptional regulator, TetR family compare
EX28DRAFT_3605 -1.1 -1.8 Fructose-2,6-bisphosphatase compare
EX28DRAFT_4405 -1.1 -0.7 ATP-dependent protease HslVU, peptidase subunit compare
EX28DRAFT_2724 -1.1 -0.8 RNA compare
EX28DRAFT_0757 -1.0 -3.5 septum site-determining protein MinD compare
EX28DRAFT_4425 -1.0 -4.1 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
EX28DRAFT_1888 -1.0 -2.6 Curlin associated repeat compare
EX28DRAFT_2222 -1.0 -5.1 formiminoglutamase (EC 3.5.3.8) compare
EX28DRAFT_3282 -1.0 -0.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2084 -1.0 -3.2 Negative regulator of beta-lactamase expression compare
EX28DRAFT_0312 -1.0 -1.9 phosphate acetyltransferase compare
EX28DRAFT_3401 -1.0 -0.8 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
EX28DRAFT_2258 -1.0 -1.5 cytochrome d oxidase, subunit II (cydB) compare
EX28DRAFT_3616 -0.9 -2.7 threonine synthase compare
EX28DRAFT_4155 -0.9 -2.1 DNA adenine methylase (dam) compare
EX28DRAFT_1383 -0.9 -1.1 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2548 -0.9 -2.3 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_1915 -0.9 -2.9 pyrimidine utilization protein B compare
EX28DRAFT_2996 -0.9 -1.3 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0313 -0.9 -3.5 acetate kinase compare
EX28DRAFT_1699 -0.9 -2.0 hypothetical protein compare
EX28DRAFT_2205 -0.9 -1.4 Molybdopterin converting factor, large subunit compare
EX28DRAFT_4386 -0.9 -1.7 Signal transduction histidine kinase compare
EX28DRAFT_4459 -0.9 -3.8 TDP-4-keto-6-deoxy-D-glucose transaminase compare
EX28DRAFT_2973 -0.9 -2.9 erythrose-4-phosphate dehydrogenase compare
EX28DRAFT_0764 -0.9 -2.8 fatty acid metabolism transcriptional regulator FadR compare
EX28DRAFT_3418 -0.9 -0.8 Bacterial regulatory helix-turn-helix protein, lysR family compare
EX28DRAFT_0214 -0.9 -3.1 cysteine synthase A compare
EX28DRAFT_4092 -0.9 -1.8 Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase compare
EX28DRAFT_0901 -0.9 -1.1 hypothetical protein compare
EX28DRAFT_0228 -0.9 -1.1 tRNA compare
EX28DRAFT_2540 -0.9 -2.8 cytochrome o ubiquinol oxidase, subunit I compare
EX28DRAFT_0948 -0.9 -1.1 hypothetical protein compare
EX28DRAFT_2045 -0.8 -0.6 thiol reductant ABC exporter, CydD subunit compare
EX28DRAFT_0921 -0.8 -0.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0286 -0.8 -1.0 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_3730 -0.8 -2.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
EX28DRAFT_2527 -0.8 -1.1 acyl-CoA thioester hydrolase, YbgC/YbaW family compare
EX28DRAFT_0712 -0.8 -1.0 DNA polymerase III, theta subunit compare
EX28DRAFT_3883 -0.8 -2.0 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_2641 -0.8 -1.3 Ash protein family compare
EX28DRAFT_0730 -0.8 -0.7 YobH-like protein compare
EX28DRAFT_3614 -0.8 -4.1 aspartate kinase (EC 2.7.2.4) compare
EX28DRAFT_2532 -0.8 -2.0 RNA compare
EX28DRAFT_3171 -0.8 -1.3 Predicted membrane protein compare
EX28DRAFT_1527 -0.8 -1.7 hypothetical protein compare
EX28DRAFT_1128 -0.8 -0.8 hypothetical protein compare
EX28DRAFT_0076 -0.8 -1.6 elongation factor 4 compare
EX28DRAFT_2075 -0.8 -2.0 type II secretion system protein H compare
EX28DRAFT_0434 -0.8 -0.9 hypothetical protein compare
EX28DRAFT_3613 -0.8 -2.9 RNA compare
EX28DRAFT_1500 -0.8 -1.1 Predicted transcriptional regulators compare
EX28DRAFT_3524 -0.8 -1.3 Protein of unknown function (DUF2778) compare
EX28DRAFT_1650 -0.8 -1.2 ribonuclease T compare
EX28DRAFT_1530 -0.8 -1.3 hypothetical protein compare
EX28DRAFT_4300 -0.8 -1.2 Predicted membrane protein compare
EX28DRAFT_1823 -0.8 -1.6 Beta-glucosidase-related glycosidases compare
EX28DRAFT_3185 -0.8 -2.4 transcriptional regulator, DeoR family compare
EX28DRAFT_2957 -0.7 -1.9 glycine cleavage system T protein compare
EX28DRAFT_1308 -0.7 -0.9 hypothetical protein compare
EX28DRAFT_2859 -0.7 -1.1 hypothetical protein compare
EX28DRAFT_3103 -0.7 -1.8 G/U mismatch-specific uracil-DNA glycosylase (EC 3.2.2.-) compare
EX28DRAFT_0166 -0.7 -4.1 polyphosphate kinase 1 compare
EX28DRAFT_1031 -0.7 -0.9 Protein of unknown function (DUF2566) compare
EX28DRAFT_2796 -0.7 -4.1 transcriptional regulator, DeoR family compare
EX28DRAFT_2974 -0.7 -3.0 transketolase, bacterial and yeast compare
EX28DRAFT_2955 -0.7 -5.4 glycine dehydrogenase (decarboxylating) compare
EX28DRAFT_1479 -0.7 -2.3 hypothetical protein compare
EX28DRAFT_2256 -0.7 -2.8 cyd operon protein YbgE compare
EX28DRAFT_2245 -0.7 -2.8 quinolinate synthetase (EC 2.5.1.72) compare
EX28DRAFT_0129 -0.7 -0.6 RNA compare
EX28DRAFT_3777 -0.7 -1.9 transcriptional antiterminator, Rof compare
EX28DRAFT_3281 -0.7 -4.6 Predicted ATPase compare
EX28DRAFT_4384 -0.7 -2.2 Superoxide dismutase compare
EX28DRAFT_4145 -0.7 -1.6 NTP pyrophosphohydrolases including oxidative damage repair enzymes compare
EX28DRAFT_4015 -0.7 -2.0 F0F1-type ATP synthase, subunit I compare
EX28DRAFT_4224 -0.7 -2.3 Predicted double-glycine peptidase compare
EX28DRAFT_2539 -0.7 -2.3 cytochrome o ubiquinol oxidase subunit II compare
EX28DRAFT_4448 -0.7 -1.3 PPIC-type PPIASE domain compare
EX28DRAFT_3408 -0.7 -1.7 Uncharacterized conserved protein compare
EX28DRAFT_3444 -0.7 -3.0 reactive intermediate/imine deaminase compare
EX28DRAFT_3311 -0.7 -0.7 ribosomal protein L11 methyltransferase compare
EX28DRAFT_1620 -0.7 -0.9 hypothetical protein compare
EX28DRAFT_3058 -0.7 -1.6 Signal transduction histidine kinase compare
EX28DRAFT_1712 -0.7 -1.7 3-hydroxybutyrate dehydrogenase compare
EX28DRAFT_4513 -0.7 -4.7 Trk-type K+ transport systems, membrane components compare
EX28DRAFT_4042 -0.7 -1.1 Protein of unknown function (DUF2629) compare
EX28DRAFT_1740 -0.7 -0.6 Phosphotransferase system cellobiose-specific component IIA compare
EX28DRAFT_4158 -0.7 -1.2 tryptophanyl-tRNA synthetase (EC 6.1.1.2) compare
EX28DRAFT_1273 -0.7 -1.4 hypothetical protein compare
EX28DRAFT_3958 -0.6 -1.1 hypothetical protein compare
EX28DRAFT_0118 -0.6 -1.6 SseB protein C-terminal domain/SseB protein N-terminal domain compare
EX28DRAFT_2883 -0.6 -2.3 Transcriptional regulator compare
EX28DRAFT_0922 -0.6 -1.2 TonB family C-terminal domain compare
EX28DRAFT_1590 -0.6 -0.9 hypothetical protein compare
EX28DRAFT_1298 -0.6 -2.1 hypothetical protein compare
EX28DRAFT_3461 -0.6 -1.7 ornithine carbamoyltransferase compare
EX28DRAFT_3264 -0.6 -2.6 PAS domain S-box compare
EX28DRAFT_3719 -0.6 -1.3 Bacterial chaperone lipoprotein (PulS_OutS) compare
EX28DRAFT_3966 -0.6 -4.1 D-serine ammonia-lyase (EC 4.3.1.18) compare
EX28DRAFT_3317 -0.6 -3.2 transcriptional regulator, TetR family compare
EX28DRAFT_0395 -0.6 -2.1 1-phosphofructokinase compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in stress experiments

For stress casamino acids across organisms