Experiment set1IT060 for Enterobacter asburiae PDN3

Compare to:

M9 with casamino acids and trichloroethylene 76.3 uM

200 most detrimental genes:

  gene name fitness t score description  
EX28DRAFT_1374 +1.9 1.1 Short-chain dehydrogenases of various substrate specificities compare
EX28DRAFT_1307 +1.7 2.8 hypothetical protein compare
EX28DRAFT_1283 +1.4 1.1 hypothetical protein compare
EX28DRAFT_1573 +1.3 1.2 hypothetical protein compare
EX28DRAFT_0857 +1.2 1.0 tRNA compare
EX28DRAFT_3070 +1.1 2.1 Predicted phosphohydrolases compare
EX28DRAFT_0615 +1.1 1.8 flagellar motor switch protein FliG compare
EX28DRAFT_4212 +1.1 1.1 Acetyltransferase (GNAT) family compare
EX28DRAFT_4347 +1.0 1.0 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0908 +1.0 1.0 phage tail protein, P2 protein I family compare
EX28DRAFT_0108 +1.0 1.0 transcriptional regulator, BadM/Rrf2 family compare
EX28DRAFT_4203 +0.9 1.8 phosphonates metabolism transcriptional regulator PhnF compare
EX28DRAFT_1252 +0.9 1.0 TIGR00156 family protein compare
EX28DRAFT_3967 +0.9 2.9 Domain of unknown function (DUF202) compare
EX28DRAFT_1792 +0.9 2.3 Protein of unknown function (DUF2543) compare
EX28DRAFT_3190 +0.9 2.2 Phosphotransferase system, mannose/fructose-specific component IIA compare
EX28DRAFT_0341 +0.8 2.8 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase compare
EX28DRAFT_0444 +0.8 1.5 Protein-tyrosine-phosphatase compare
EX28DRAFT_0813 +0.8 2.4 Uncharacterized conserved protein compare
EX28DRAFT_2033 +0.8 2.1 pyruvate formate-lyase 1-activating enzyme compare
EX28DRAFT_4426 +0.8 0.9 transcriptional regulator, TetR family compare
EX28DRAFT_2837 +0.8 4.0 RNA polymerase, sigma 38 subunit, RpoS compare
EX28DRAFT_1021 +0.7 1.2 Protein of unknown function (DUF2474) compare
EX28DRAFT_1673 +0.7 1.7 Protein of unknown function (DUF2767) compare
EX28DRAFT_4540 +0.7 1.8 Endonuclease V (EC 3.1.21.-) compare
EX28DRAFT_3694 +0.7 1.0 mutator mutT protein compare
EX28DRAFT_3453 +0.7 0.8 YhcH/YjgK/YiaL family protein compare
EX28DRAFT_3468 +0.7 2.5 YecR-like lipoprotein compare
EX28DRAFT_1763 +0.7 1.1 Glutamate dehydrogenase/leucine dehydrogenase compare
EX28DRAFT_3724 +0.7 2.1 ABC-type multidrug transport system, ATPase component compare
EX28DRAFT_1193 +0.7 2.1 diguanylate cyclase (GGDEF) domain compare
EX28DRAFT_2752 +0.7 1.3 Predicted transcriptional regulators compare
EX28DRAFT_2646 +0.7 1.2 HNH endonuclease compare
EX28DRAFT_2746 +0.7 1.6 hypothetical protein compare
EX28DRAFT_0504 +0.7 2.0 ADP-ribose pyrophosphatase compare
EX28DRAFT_4439 +0.7 1.5 hypothetical protein compare
EX28DRAFT_1178 +0.7 1.9 transcriptional regulator, DeoR family compare
EX28DRAFT_3314 +0.6 0.6 Factor for inversion stimulation Fis, transcriptional activator compare
EX28DRAFT_1201 +0.6 2.5 phenazine biosynthesis protein PhzF family compare
EX28DRAFT_3044 +0.6 2.1 TonB system transport protein ExbD, group 1 compare
EX28DRAFT_0518 +0.6 3.8 Bacterial transferase hexapeptide (six repeats) compare
EX28DRAFT_3368 +0.6 0.7 tRNA dimethylallyltransferase compare
EX28DRAFT_3277 +0.6 2.2 Stringent starvation protein B compare
EX28DRAFT_3083 +0.6 3.3 SH3 domain protein compare
EX28DRAFT_1943 +0.6 1.0 Protein of unknown function (DUF3225) compare
EX28DRAFT_1800 +0.6 3.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
EX28DRAFT_3854 +0.6 1.6 Transcriptional regulators compare
EX28DRAFT_4278 +0.6 1.6 Acetyltransferases, including N-acetylases of ribosomal proteins compare
EX28DRAFT_4508 +0.6 1.1 hypothetical protein compare
EX28DRAFT_2515 +0.6 1.1 O-6-methylguanine DNA methyltransferase compare
EX28DRAFT_3089 +0.6 0.7 Transcriptional regulators compare
EX28DRAFT_3880 +0.6 4.9 Glycosyltransferase compare
EX28DRAFT_2866 +0.6 4.8 Uncharacterized domain of BarA-like signal transduction histidine kinases compare
EX28DRAFT_3875 +0.6 4.1 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_0091 +0.6 0.6 hypothetical protein compare
EX28DRAFT_3639 +0.6 1.1 Bacterial protein of unknown function (DUF903) compare
EX28DRAFT_2067 +0.6 0.9 Transglycosylase SLT domain compare
EX28DRAFT_1400 +0.6 1.3 Transcriptional regulators compare
EX28DRAFT_1728 +0.6 2.1 hexose kinase, 1-phosphofructokinase family compare
EX28DRAFT_1367 +0.5 0.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2464 +0.5 1.1 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component compare
EX28DRAFT_0888 +0.5 1.0 hypothetical protein compare
EX28DRAFT_0516 +0.5 2.7 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_2725 +0.5 0.9 hypothetical protein compare
EX28DRAFT_1218 +0.5 1.0 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
EX28DRAFT_3287 +0.5 1.1 Protein of unknown function (DUF1471) compare
EX28DRAFT_0524 +0.5 2.1 hypothetical protein compare
EX28DRAFT_3877 +0.5 3.8 hypothetical protein compare
EX28DRAFT_1268 +0.5 1.0 Lysophospholipase L1 and related esterases compare
EX28DRAFT_2528 +0.5 1.6 competence protein ComEA helix-hairpin-helix repeat region compare
EX28DRAFT_3042 +0.5 1.8 hypothetical protein compare
EX28DRAFT_0437 +0.5 1.5 two component transcriptional regulator, LytTR family compare
EX28DRAFT_2810 +0.5 1.2 Ni,Fe-hydrogenase III small subunit compare
EX28DRAFT_4421 +0.5 0.7 N-acetylglutamate kinase (EC 2.7.2.8) compare
EX28DRAFT_2135 +0.5 2.5 ATPase components of various ABC-type transport systems, contain duplicated ATPase compare
EX28DRAFT_1760 +0.5 1.5 Uncharacterized conserved protein compare
EX28DRAFT_3476 +0.5 0.5 hypothetical protein compare
EX28DRAFT_3041 +0.5 1.3 hypothetical protein compare
EX28DRAFT_3512 +0.5 0.5 Uncharacterized conserved small protein compare
EX28DRAFT_2560 +0.5 1.7 Predicted transcriptional regulator compare
EX28DRAFT_2338 +0.5 1.8 protein CrcB compare
EX28DRAFT_3924 +0.5 2.1 hydroxyisourate hydrolase compare
EX28DRAFT_2020 +0.5 2.6 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1453 +0.5 1.0 putative selenium-binding protein YdfZ compare
EX28DRAFT_2814 +0.5 1.4 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit compare
EX28DRAFT_4416 +0.5 2.0 fructose-6-phosphate aldolase, TalC/MipB family compare
EX28DRAFT_2726 +0.5 1.9 Cupin domain compare
EX28DRAFT_2496 +0.5 3.6 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family compare
EX28DRAFT_3732 +0.5 0.7 poly(A) polymerase compare
EX28DRAFT_2502 +0.5 2.0 Acetyltransferases, including N-acetylases of ribosomal proteins compare
EX28DRAFT_2827 +0.5 1.8 Nitrous oxide-stimulated promoter compare
EX28DRAFT_0876 +0.5 0.3 hypothetical protein compare
EX28DRAFT_1709 +0.5 1.6 3-oxoacid CoA-transferase, B subunit compare
EX28DRAFT_1203 +0.5 3.3 Arabinose efflux permease compare
EX28DRAFT_3876 +0.5 3.6 Lipid A core - O-antigen ligase and related enzymes compare
EX28DRAFT_2200 +0.5 1.6 Putative inner membrane protein YbhQ compare
EX28DRAFT_2118 +0.5 1.1 arsenate reductase (glutaredoxin) compare
EX28DRAFT_0667 +0.5 1.2 P pilus assembly protein, chaperone PapD compare
EX28DRAFT_1318 +0.5 1.5 hypothetical protein compare
EX28DRAFT_3828 +0.5 1.7 Amidases related to nicotinamidase compare
EX28DRAFT_0435 +0.5 2.1 Predicted transcriptional regulators compare
EX28DRAFT_2243 +0.5 0.8 cation diffusion facilitator family transporter compare
EX28DRAFT_2864 +0.5 2.0 (p)ppGpp synthetase, RelA/SpoT family compare
EX28DRAFT_1272 +0.5 1.9 hypothetical protein compare
EX28DRAFT_4301 +0.5 1.5 Protein of unknown function (DUF2500) compare
EX28DRAFT_2765 +0.5 2.1 ABC-type proline/glycine betaine transport systems, periplasmic components compare
EX28DRAFT_2768 +0.5 1.7 efflux pump membrane protein (multidrug resistance protein A) compare
EX28DRAFT_2287 +0.5 3.3 phosphoglucomutase, alpha-D-glucose phosphate-specific compare
EX28DRAFT_2649 +0.5 0.8 tRNA compare
EX28DRAFT_3801 +0.4 2.4 oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain compare
EX28DRAFT_1734 +0.4 2.6 Predicted Na+/dicarboxylate symporter compare
EX28DRAFT_0282 +0.4 2.0 Arabinose efflux permease compare
EX28DRAFT_1804 +0.4 1.4 spermidine/putrescine ABC transporter ATP-binding subunit compare
EX28DRAFT_4490 +0.4 2.3 Lysophospholipase compare
EX28DRAFT_0299 +0.4 1.4 Acetyltransferases, including N-acetylases of ribosomal proteins compare
EX28DRAFT_0905 +0.4 0.9 phage baseplate assembly protein V compare
EX28DRAFT_3242 +0.4 1.1 transcriptional regulator, Nlp family compare
EX28DRAFT_3487 +0.4 0.8 hypothetical protein compare
EX28DRAFT_0145 +0.4 1.1 Protein of unknown function (DUF1641) compare
EX28DRAFT_0938 +0.4 2.0 Predicted metal-dependent phosphoesterases (PHP family) compare
EX28DRAFT_4266 +0.4 0.5 Fe2+/Zn2+ uptake regulation proteins compare
EX28DRAFT_0882 +0.4 1.6 hypothetical protein compare
EX28DRAFT_0906 +0.4 1.5 Phage baseplate assembly protein W compare
EX28DRAFT_1022 +0.4 1.7 cytochrome d oxidase, subunit II (cydB) compare
EX28DRAFT_4173 +0.4 1.0 Predicted redox protein, regulator of disulfide bond formation compare
EX28DRAFT_4469 +0.4 2.3 RNA compare
EX28DRAFT_2037 +0.4 0.4 DMSO reductase, iron-sulfur subunit compare
EX28DRAFT_3462 +0.4 1.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3348 +0.4 2.2 Membrane transporters of cations and cationic drugs compare
EX28DRAFT_2277 +0.4 0.4 dinuclear metal center protein, YbgI/SA1388 family compare
EX28DRAFT_3435 +0.4 1.8 addiction module toxin, RelE/StbE family compare
EX28DRAFT_2440 +0.4 1.7 FOG: EAL domain compare
EX28DRAFT_1388 +0.4 1.1 Phosphotransferase system cellobiose-specific component IIB compare
EX28DRAFT_3624 +0.4 0.9 hypothetical protein compare
EX28DRAFT_1250 +0.4 0.4 Protein of unknown function (DUF421) compare
EX28DRAFT_1628 +0.4 0.6 electron transport complex, RnfABCDGE type, E subunit compare
EX28DRAFT_1224 +0.4 1.8 benzoate transporter compare
EX28DRAFT_3294 +0.4 1.7 Transcriptional regulator compare
EX28DRAFT_1226 +0.4 2.0 EamA-like transporter family/Multidrug resistance efflux transporter compare
EX28DRAFT_3245 +0.4 0.6 Predicted NTP binding protein (contains STAS domain) compare
EX28DRAFT_2063 +0.4 2.4 L-threonine aldolase (EC 4.1.2.5) compare
EX28DRAFT_2421 +0.4 0.5 Protein of unknown function (DUF1158) compare
EX28DRAFT_4134 +0.4 1.1 Fe2+ transport system protein A compare
EX28DRAFT_2183 +0.4 1.5 Predicted SAM-dependent methyltransferase compare
EX28DRAFT_3538 +0.4 1.6 4-hydroxyphenylacetate 3-monooxygenase, reductase component compare
EX28DRAFT_0941 +0.4 2.0 cob(I)alamin adenosyltransferase compare
EX28DRAFT_0631 +0.4 2.8 DNA-binding HTH domain-containing proteins compare
EX28DRAFT_4543 +0.4 2.5 Protein of unknown function (DUF1481) compare
EX28DRAFT_1355 +0.4 1.8 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
EX28DRAFT_1894 +0.4 0.8 Uncharacterized component of anaerobic dehydrogenases compare
EX28DRAFT_1984 +0.4 1.9 regulator of competence-specific genes compare
EX28DRAFT_0568 +0.4 1.2 Transcriptional regulator compare
EX28DRAFT_1985 +0.4 2.0 cell division inhibitor SulA compare
EX28DRAFT_1297 +0.4 1.6 hypothetical protein compare
EX28DRAFT_4445 +0.4 1.9 Transcriptional regulator compare
EX28DRAFT_1498 +0.4 1.8 Glutamine synthetase compare
EX28DRAFT_1945 +0.4 1.1 Hydantoin racemase compare
EX28DRAFT_0918 +0.4 0.6 Ogr/Delta-like zinc finger compare
EX28DRAFT_2697 +0.4 1.8 ribosomal subunit interface protein compare
EX28DRAFT_1229 +0.4 1.9 peptidase T compare
EX28DRAFT_0632 +0.4 1.0 Protein of unknown function (DUF2594) compare
EX28DRAFT_4447 +0.4 1.8 PPIC-type PPIASE domain compare
EX28DRAFT_0340 +0.4 1.8 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase compare
EX28DRAFT_3205 +0.4 1.4 Predicted acetyltransferase compare
EX28DRAFT_1207 +0.4 1.4 MarB protein compare
EX28DRAFT_0526 +0.4 0.8 hypothetical protein compare
EX28DRAFT_0854 +0.4 1.3 respiratory nitrate reductase, gamma subunit compare
EX28DRAFT_0752 +0.4 1.1 outer membrane lipoprotein, Slp family compare
EX28DRAFT_3135 +0.4 1.3 hypothetical protein compare
EX28DRAFT_2606 +0.4 1.6 taurine ABC transporter, periplasmic binding protein compare
EX28DRAFT_1254 +0.4 1.8 Transcriptional regulator compare
EX28DRAFT_1801 +0.4 2.7 Signal transduction histidine kinase compare
EX28DRAFT_2643 +0.4 2.0 hypothetical protein compare
EX28DRAFT_2653 +0.4 2.3 Transcriptional regulator Crl compare
EX28DRAFT_3825 +0.4 0.8 YsaB-like lipoprotein compare
EX28DRAFT_2753 +0.4 0.7 Rhodanese-related sulfurtransferase compare
EX28DRAFT_2129 +0.4 1.5 Glucose/sorbosone dehydrogenases compare
EX28DRAFT_3778 +0.4 0.9 Uncharacterised protein family (UPF0253) compare
EX28DRAFT_1202 +0.4 0.9 phenazine biosynthesis protein PhzF family compare
EX28DRAFT_4372 +0.4 0.8 Ribbon-helix-helix protein, copG family compare
EX28DRAFT_0655 +0.4 1.1 trehalose-phosphatase compare
EX28DRAFT_1899 +0.4 1.7 Transcriptional regulator compare
EX28DRAFT_2415 +0.4 1.0 AraC-type DNA-binding domain-containing proteins compare
EX28DRAFT_2633 +0.4 1.8 Uncharacterised nucleotidyltransferase compare
EX28DRAFT_0820 +0.4 1.5 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4277 +0.4 1.1 RNA compare
EX28DRAFT_0975 +0.4 1.6 psp operon transcriptional activator PspF compare
EX28DRAFT_1276 +0.4 1.5 Bacterial Ig-like domain (group 2) compare
EX28DRAFT_2638 +0.4 1.9 hypothetical protein compare
EX28DRAFT_0594 +0.4 0.5 T/G mismatch-specific endonuclease (EC 3.1.-.-) compare
EX28DRAFT_0805 +0.4 2.7 type VI secretion protein, VC_A0110 family compare
EX28DRAFT_0718 +0.4 1.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1110 +0.4 2.0 Transcriptional regulator compare
EX28DRAFT_1570 +0.4 1.0 hypothetical protein compare
EX28DRAFT_2820 +0.4 2.2 hydrogenase expression/formation protein HypD compare
EX28DRAFT_3746 +0.4 1.6 Predicted membrane protein compare
EX28DRAFT_3278 +0.4 0.8 Glutathione S-transferase compare
EX28DRAFT_1454 +0.4 1.9 Mannitol-1-phosphate/altronate dehydrogenases compare
EX28DRAFT_2002 +0.4 2.2 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component compare
EX28DRAFT_0633 +0.4 3.1 two component transcriptional regulator, LuxR family compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in stress experiments

For stress casamino acids across organisms