Experiment set1IT060 for Agrobacterium fabrum C58

Compare to:

D-Ribose carbon source

200 most important genes:

  gene name fitness t score description  
Atu0038 -8.3 -5.7 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2791 -7.8 -5.4 3-isopropylmalate dehydrogenase compare
Atu0432 -7.6 -7.4 O-succinylhomoserine sulfhydrylase compare
Atu0679 -7.1 -4.9 ATP phosphoribosyltransferase compare
Atu1075 -7.1 -4.9 amidophosphoribosyltransferase compare
Atu2040 -7.0 -4.9 phosphoserine phosphatase compare
Atu3754 -6.9 -3.9 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2709 -6.9 -16.2 3-isopropylmalate dehydratase, large subunit compare
Atu0099 -6.8 -11.4 prephenate dehydratase compare
Atu1687 -6.6 -11.1 anthranilate phosphoribosyltransferase compare
Atu2289 -6.5 -16.8 anthranilate synthase component I and II compare
Atu0678 -6.5 -4.5 histidyl-tRNA synthetase compare
Atu3482 -6.3 -11.0 pantoate--beta-alanine ligase compare
Atu1750 -6.3 -3.3 phosphoribosyl c-AMP cyclohydrolase compare
Atu1850 -6.3 -4.3 phosphoribosylformylglycinamidine synthetase II compare
Atu3707 -6.3 -4.4 phosphoserine aminotransferase compare
Atu2036 -6.2 -15.1 acetolactate synthase III, large subunit compare
Atu1688 -6.1 -7.3 indole-3-glycerol-phosphate synthase compare
Atu2264 -6.1 -13.6 2-isopropylmalate synthase compare
Atu0537 -5.9 -7.0 histidinol dehydrogenase compare
Atu3706 -5.8 -8.9 D-3-phosphoglycerate dehydrogenase compare
Atu1205 -5.8 -15.4 threonine dehydratase compare
Atu0030 -5.7 -2.3 phosphocarrier protein HPr compare
Atu2718 -5.7 -8.7 homoserine O-succinyltransferase compare
Atu1141 -5.7 -8.6 Phosphoribosylglycinamide synthetase compare
Atu0400 -5.6 -5.4 orotate phosphoribosyltransferase compare
Atu3483 -5.6 -8.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu1140 -5.6 -4.9 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0043 -5.5 -3.8 imidazoleglycerol-phosphate dehydratase compare
Atu2726 -5.4 -23.9 pyruvate carboxylase compare
Atu3755 -5.3 -6.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0039 -5.3 -3.6 imidazoleglycerol-phosphate synthase cyclase compare
Atu1588 -5.2 -12.1 homoserine dehydrogenase compare
Atu0399 -5.1 -7.0 dihydroorotase compare
Atu1030 -4.9 -3.3 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2790 -4.9 -2.7 3-isopropylmalate dehydratase, small subunit compare
Atu0017 -4.9 -4.7 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0298 -4.8 -7.4 orotidine 5 compare
Atu0647 -4.8 -8.0 phosphoribosylamine--glycine ligase compare
Atu1308 -4.7 -7.4 aspartate carbamoyl transferase catalytic subunit compare
Atu1359 -4.6 -1.9 dnaK deletion suppressor protein compare
Atu0041 -4.6 -3.2 glutamine amidotransferase compare
Atu2650 -4.6 -15.3 glycerol-3-phosphate dehydrogenase compare
Atu0422 -4.6 -4.2 ABC transporter, membrane spanning protein compare
Atu3739 -4.4 -4.3 phosphoglycerate kinase compare
Atu1845 -4.4 -5.1 phosphoribosylformylglycinamidine synthase I compare
Atu3885 -4.3 -9.2 inositol monophosphatase compare
Atu0486 -4.2 -4.9 dihydroorotate dehydrogenase compare
Atu3469 -4.1 -4.0 phosphoglyceromutase compare
Atu1844 -4.0 -5.0 Phosphoribosylformylglycinamidine synthetase compare
Atu3730 -3.9 -3.0 hypothetical protein compare
Atu6098 -3.8 -1.5 transcriptional regulator, HTH family compare
Atu1307 -3.8 -6.0 dihydroorotase compare
Atu0040 -3.6 -2.0 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2015 -3.5 -14.5 aminotransferase compare
Atu0602 -3.4 -11.8 glutamine synthetase compare
Atu0999 -3.3 -9.9 magnesium transport protein compare
Atu0641 -3.2 -4.4 hypothetical protein compare
Atu0421 -3.1 -2.5 ABC transporter, membrane spanning protein compare
Atu0364 -3.0 -9.4 ribokinase conserved
Atu0659 -2.9 -7.0 NTP pyrophosphohydrolase, MutT family compare
Atu0601 -2.7 -12.9 oxidoreductase compare
Atu1589 -2.6 -5.3 aminotransferase, class I compare
Atu0062 -2.4 -9.0 transcriptional regulator, ROK family compare
Atu2548 -2.3 -14.0 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu4173 -2.3 -4.1 phosphoenolpyruvate-protein phosphotransferase compare
Atu1456 -2.3 -10.7 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu3783 -2.2 -14.5 glutamate synthase subunit beta compare
Atu2155 -2.2 -15.5 methionine synthase compare
Atu3763 -2.2 -2.5 hypothetical protein compare
Atu1021 -2.1 -3.6 outer membrane protein compare
Atu1463 -2.1 -6.8 glycine cleavage system component H compare
Atu1446 -2.1 -3.4 two component response regulator compare
Atu1462 -2.0 -11.3 glycine cleavage system protein P2 compare
Atu4711 -2.0 -5.9 two component sensor kinase compare
Atu1464 -1.9 -6.2 glycine cleavage system T protein, aminomethyltransferase compare
Atu3784 -1.9 -14.9 glutamate synthase large subunit compare
Atu1454 -1.9 -6.7 siroheme synthase compare
Atu4317 -1.8 -3.7 TetR family transcriptional regulator compare
Atu6114 -1.8 -4.3 hypothetical protein compare
Atu2125 -1.8 -1.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu1686 -1.7 -10.7 peptidyl-prolyl cis-trans isomerse D compare
Atu5125 -1.6 -4.9 GntR family transcriptional regulator compare
Atu3731 -1.6 -5.8 5-formyltetrahydrofolate cyclo-ligase compare
Atu0188 -1.6 -4.1 ABC transporter, membrane spanning protein (peptide) compare
Atu4702 -1.5 -6.4 GntR family transcriptional regulator compare
Atu0434 -1.4 -2.7 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2239 -1.4 -4.9 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu3910 -1.4 -3.7 LamB/YcsF family protein compare
Atu4685 -1.4 -7.8 LacI family transcriptional regulator compare
Atu0388 -1.4 -9.1 two component sensor kinase compare
Atu4674 -1.4 -8.2 GntR family transcriptional regulator compare
Atu2832 -1.4 -4.4 tRNA modification GTPase compare
Atu0977 -1.3 -2.8 serine protease DO-like protease compare
Atu0912 -1.3 -1.3 Na+/H+ antiporter compare
Atu2044 -1.3 -4.4 HFLC protein compare
Atu0189 -1.2 -3.4 ABC transporter, membrane spanning protein (peptide) compare
Atu3613 -1.2 -4.8 hypothetical protein compare
Atu1327 -1.2 -3.0 NADH-ubiquinone oxidoreductase compare
Atu1774 -1.2 -6.3 ABC transporter, substrate binding protein (peptide) compare
Atu4232 -1.2 -6.2 GntR family transcriptional regulator compare
Atu3997 -1.2 -9.0 biotin synthetase compare
Atu1810 -1.1 -1.3 hypothetical protein compare
Atu2464 -1.1 -2.3 formyltetrahydrofolate deformylase compare
Atu1242 -1.1 -6.3 cytochrome oxidase assembly factor compare
Atu2045 -1.1 -6.1 HFLK protein compare
Atu2831 -1.1 -3.8 glucose inhibited division protein A compare
Atu2238 -1.1 -6.1 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu0332 -1.1 -6.5 RNA polymerase sigma-54 factor compare
Atu0981 -1.1 -6.8 glutamate-ammonia-ligase adenylyltransferase compare
Atu2532 -1.1 -3.1 transcriptional regulator, MarR family compare
Atu1163 -1.1 -0.9 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2209 -1.1 -3.0 pyrroline-5-carboxylate reductase compare
Atu4346 -1.0 -3.5 hypothetical protein compare
Atu8115 -1.0 -4.7 Hypothetical Protein compare
Atu2682 -1.0 -2.7 hypothetical protein compare
Atu4635 -1.0 -4.5 hypothetical protein compare
Atu2747 -1.0 -6.7 hypothetical protein compare
Atu3290 -1.0 -5.8 phosphomethylpyrimidine kinase compare
Atu0368 -1.0 -3.0 tRNA pseudouridine synthase I compare
Atu3908 -1.0 -5.8 GntR family transcriptional regulator compare
Atu2123 -1.0 -3.6 methylenetetrahydrofolate reductase compare
Atu2554 -1.0 -1.6 lysyl-tRNA synthetase compare
Atu1470 -0.9 -1.3 Camphor resistance protein compare
Atu3288 -0.9 -4.9 hydroxyethylthiazole kinase compare
Atu3289 -0.9 -2.7 thiamine-phosphate pyrophosphorylase compare
Atu8018 -0.9 -0.9 hypothetical protein compare
Atu2381 -0.9 -2.9 hypothetical protein compare
Atu4530 -0.9 -3.7 TetR family transcriptional regulator compare
Atu4576 -0.9 -5.4 ROK family transcriptional regulator compare
Atu0768 -0.9 -5.2 cytochrome-c oxidase chain I compare
Atu3963 -0.9 -4.0 GntR family transcriptional regulator compare
Atu1457 -0.9 -1.9 hypothetical protein compare
Atu1074 -0.9 -5.5 NAD/NADP dependent oxidoreductase compare
Atu4773 -0.9 -1.5 two component response regulator compare
Atu2684 -0.9 -1.0 hypothetical protein compare
Atu0971 -0.9 -2.6 two component sensor kinase compare
Atu1286 -0.9 -1.8 hypothetical protein compare
Atu2555 -0.9 -2.8 L-lysine 2,3-aminomutase compare
Atu4098 -0.9 -6.2 quinolinate synthetase compare
Atu4031 -0.9 -6.7 sugar ABC transporter permease compare
Atu2803 -0.8 -3.5 Cobalamin biosynthesis associated protein compare
Atu2569 -0.8 -5.9 thiamine biosynthesis protein compare
Atu0660 -0.8 -5.2 hydrolase compare
Atu0190 -0.8 -3.9 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2738 -0.8 -5.1 nucleoside-diphosphate-sugar epimerase compare
Atu0354 -0.8 -1.4 ferric uptake regulator compare
Atu2207 -0.8 -1.6 two component sensor kinase compare
Atu2802 -0.8 -3.7 precorrin-8X methylmutase compare
Atu1546 -0.8 -2.9 transcriptional regulator, MerR family compare
Atu4364 -0.8 -3.7 LacI family transcriptional regulator compare
Atu0029 -0.8 -2.8 S-adenosylhomocysteine hydrolase compare
Atu4845 -0.8 -6.1 sugar ABC transporter permease compare
Atu0770 -0.8 -2.9 cytochrome C oxidase assembly protein compare
Atu3287 -0.8 -2.5 thiamine biosynthesis associated protein compare
Atu0767 -0.8 -2.8 cytochrome c oxidase subunit II compare
Atu1667 -0.8 -1.6 hypothetical protein compare
Atu1077 -0.8 -2.3 DNA repair protein compare
Atu1705 -0.7 -2.3 SEC-independent protein translocase protein compare
Atu0181 -0.7 -2.2 hypothetical protein compare
Atu4096 -0.7 -4.4 nicotinate-nucleotide pyrophosphorylase compare
Atu3009 -0.7 -0.7 exopolysaccharide production protein compare
Atu3144 -0.7 -4.1 GntR family transcriptional regulator compare
Atu0361 -0.7 -2.0 transcriptional regulator compare
Atu0946 -0.7 -4.5 dehydrogenase compare
Atu1175 -0.7 -1.2 hypothetical protein compare
Atu0508 -0.7 -1.9 PH Adaption potassium efflux system compare
Atu2349 -0.7 -1.6 hypothetical protein compare
Atu1323 -0.7 -2.2 hypothetical protein compare
Atu3240 -0.7 -4.0 ROK family transcriptional regulator compare
Atu4032 -0.7 -5.1 sugar ABC transporter ATPase compare
Atu0658 -0.7 -3.2 phosphate permease compare
Atu0551 -0.7 -2.6 flagellar protein FLGA precursor compare
Atu4842 -0.7 -5.7 sugar ABC transporter substrate-binding protein compare
Atu5513 -0.7 -1.2 cold shock protein compare
Atu3697 -0.7 -2.5 ATP-dependent protease LA 2 compare
Atu1445 -0.7 -2.9 two component sensor kinase compare
Atu1747 -0.7 -2.2 hypothetical protein compare
Atu2346 -0.7 -4.8 ABC transporter, membrane spanning protein (sugar) compare
Atu0824 -0.7 -0.9 hypothetical protein compare
Atu5468 -0.7 -1.2 hypothetical protein compare
Atu2245 -0.7 -4.3 Na+/Pi-cotransporter compare
Atu1685 -0.7 -0.8 hypothetical protein compare
Atu0101 -0.7 -1.9 cytochrome c compare
Atu0300 -0.7 -2.6 methyltransferase compare
Atu0065 -0.6 -4.1 ABC transporter, nucleotide binding/ATPase protein (sugar) compare
Atu0107 -0.6 -1.9 hypothetical protein compare
Atu0769 -0.6 -0.8 protoheme IX farnesyltransferase compare
Atu3623 -0.6 -2.9 DnaJ family molecular chaperone compare
Atu4030 -0.6 -3.6 sugar ABC transporter permease compare
Atu2347 -0.6 -3.3 ABC transporter, nucleotide binding/ATPase protein (sugar) compare
Atu1005 -0.6 -2.4 hypothetical protein compare
Atu2083 -0.6 -1.7 DNA repair protein RecN compare
Atu2606 -0.6 -3.1 transcriptional regulator, GntR family compare
Atu4099 -0.6 -3.2 hypothetical protein compare
Atu4217 -0.6 -1.0 TetR family transcriptional regulator compare
Atu2237 -0.6 -2.6 cytochrome c1 compare
Atu0510 -0.6 -3.8 pH adaption potassium efflux system protein compare
Atu0598 -0.6 -2.6 phosphogluconate dehydratase compare
Atu1573 -0.6 -1.0 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source D-Ribose in Agrobacterium fabrum C58

For carbon source D-Ribose across organisms