Experiment set1IT059 for Enterobacter asburiae PDN3

Compare to:

M9 with casamino acids and trichloroethylene 76.3 uM

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_0932 -4.5 -6.1 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
EX28DRAFT_2265 -4.5 -2.0 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_0934 -4.0 -12.8 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_4544 -3.9 -2.2 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_0046 -3.4 -5.1 shikimate dehydrogenase compare
EX28DRAFT_0331 -3.4 -3.9 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_0769 -3.3 -1.5 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF compare
EX28DRAFT_0933 -3.2 -12.7 tryptophan synthase, beta subunit compare
EX28DRAFT_2252 -3.2 -2.8 TolA protein compare
EX28DRAFT_3285 -3.1 -6.6 malate dehydrogenase (NAD) (EC 1.1.1.37) compare
EX28DRAFT_3419 -3.1 -13.1 Fructose-1,6-bisphosphatase compare
EX28DRAFT_0936 -3.1 -6.4 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_0292 -3.1 -4.2 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_2270 -3.0 -1.3 succinate dehydrogenase subunit C (EC 1.3.5.1) compare
EX28DRAFT_2268 -3.0 -7.4 succinate dehydrogenase subunit A (EC 1.3.5.1) compare
EX28DRAFT_3711 -3.0 -1.3 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_2027 -2.9 -5.5 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_2264 -2.9 -6.7 succinyl-CoA synthetase, beta subunit compare
EX28DRAFT_0935 -2.9 -6.8 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
EX28DRAFT_2267 -2.8 -5.4 succinate dehydrogenase and fumarate reductase iron-sulfur protein compare
EX28DRAFT_2958 -2.8 -1.3 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_3336 -2.8 -11.3 aspartate ammonia-lyase compare
EX28DRAFT_4297 -2.7 -1.2 cell division ATP-binding protein FtsE compare
EX28DRAFT_0167 -2.7 -2.3 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
EX28DRAFT_0092 -2.6 -2.0 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_3710 -2.5 -7.1 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_0972 -2.5 -2.8 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_3079 -2.5 -1.1 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0111 -2.5 -2.7 FeS cluster assembly scaffold IscU compare
EX28DRAFT_2269 -2.5 -7.2 succinate dehydrogenase, hydrophobic membrane anchor protein compare
EX28DRAFT_2531 -2.5 -4.8 endopeptidase La compare
EX28DRAFT_2263 -2.4 -5.0 succinyl-CoA synthetase, alpha subunit compare
EX28DRAFT_1706 -2.3 -9.9 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
EX28DRAFT_0001 -2.3 -3.1 Elongation factor Tu domain 2/Elongation factor Tu C-terminal domain compare
EX28DRAFT_2046 -2.2 -2.7 thiol reductant ABC exporter, CydC subunit compare
EX28DRAFT_0038 -2.2 -2.0 K+ transport systems, NAD-binding component compare
EX28DRAFT_4507 -2.2 -3.7 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
EX28DRAFT_0332 -2.2 -9.3 proton-translocating NADH-quinone oxidoreductase, chain L compare
EX28DRAFT_0272 -2.1 -1.7 phosphohistidine phosphatase, SixA compare
EX28DRAFT_2259 -2.1 -3.7 Cytochrome bd-type quinol oxidase, subunit 1 compare
EX28DRAFT_0284 -2.1 -7.5 Phosphoglycerate dehydrogenase and related dehydrogenases compare
EX28DRAFT_1986 -2.1 -1.3 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_0334 -2.1 -3.2 proton-translocating NADH-quinone oxidoreductase, chain N compare
EX28DRAFT_0325 -2.1 -3.0 NADH-quinone oxidoreductase, F subunit compare
EX28DRAFT_0323 -2.0 -5.5 NADH (or F420H2) dehydrogenase, subunit C compare
EX28DRAFT_3320 -2.0 -0.9 hypothetical protein compare
EX28DRAFT_2945 -2.0 -2.0 tyrosine recombinase XerD compare
EX28DRAFT_0328 -1.9 -1.7 NADH:ubiquinone oxidoreductase subunit 1 (chain H) compare
EX28DRAFT_0286 -1.9 -1.8 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_3879 -1.9 -4.2 Glycosyltransferase compare
EX28DRAFT_0327 -1.9 -5.3 NADH-quinone oxidoreductase, chain G compare
EX28DRAFT_0333 -1.8 -8.1 proton-translocating NADH-quinone oxidoreductase, chain M compare
EX28DRAFT_3647 -1.7 -4.1 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_0132 -1.7 -4.4 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_4452 -1.7 -2.7 thioredoxin compare
EX28DRAFT_4153 -1.7 -2.4 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_0322 -1.7 -7.1 NADH-quinone oxidoreductase, B subunit compare
EX28DRAFT_4349 -1.6 -1.4 hypothetical protein compare
EX28DRAFT_4271 -1.6 -1.0 glycerol-3-phosphate acyltransferase (EC 2.3.1.15) compare
EX28DRAFT_4077 -1.6 -1.2 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
EX28DRAFT_1609 -1.6 -10.3 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region/hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region compare
EX28DRAFT_4156 -1.6 -1.1 ribulose-phosphate 3-epimerase compare
EX28DRAFT_0330 -1.6 -2.9 NADH:ubiquinone oxidoreductase subunit 6 (chain J) compare
EX28DRAFT_3646 -1.5 -4.3 4-hydroxythreonine-4-phosphate dehydrogenase compare
EX28DRAFT_0329 -1.5 -4.2 NADH-quinone oxidoreductase, chain I compare
EX28DRAFT_2845 -1.5 -2.1 Protein of unknown function (DUF3561) compare
EX28DRAFT_2258 -1.5 -1.3 cytochrome d oxidase, subunit II (cydB) compare
EX28DRAFT_1328 -1.5 -1.0 Putative excisionase (DUF1233) compare
EX28DRAFT_4318 -1.4 -2.8 Glucose-6-phosphate isomerase compare
EX28DRAFT_0494 -1.4 -0.9 Protein-tyrosine-phosphatase compare
EX28DRAFT_2008 -1.4 -4.9 Aspartate/tyrosine/aromatic aminotransferase compare
EX28DRAFT_2948 -1.4 -5.9 Uncharacterized conserved protein compare
EX28DRAFT_0778 -1.4 -1.0 hypothetical protein compare
EX28DRAFT_0948 -1.4 -1.5 hypothetical protein compare
EX28DRAFT_0523 -1.4 -1.3 Glycosyltransferase like family 2 compare
EX28DRAFT_2540 -1.4 -3.9 cytochrome o ubiquinol oxidase, subunit I compare
EX28DRAFT_2424 -1.4 -5.1 transcriptional regulator, TetR family compare
EX28DRAFT_2492 -1.4 -2.7 Protein of unknown function (DUF2496) compare
EX28DRAFT_0531 -1.4 -4.3 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_3675 -1.3 -5.3 transcriptional regulator, LacI family compare
EX28DRAFT_0321 -1.3 -0.9 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
EX28DRAFT_0593 -1.3 -7.7 DNA-methyltransferase (dcm) compare
EX28DRAFT_4155 -1.3 -2.6 DNA adenine methylase (dam) compare
EX28DRAFT_4386 -1.3 -2.7 Signal transduction histidine kinase compare
EX28DRAFT_2250 -1.3 -2.4 peptidoglycan-associated lipoprotein compare
EX28DRAFT_3883 -1.3 -3.2 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_2890 -1.3 -1.3 tRNA compare
EX28DRAFT_2045 -1.3 -0.7 thiol reductant ABC exporter, CydD subunit compare
EX28DRAFT_0901 -1.3 -1.2 hypothetical protein compare
EX28DRAFT_4348 -1.3 -2.5 oxygen-independent coproporphyrinogen III oxidase compare
EX28DRAFT_1845 -1.3 -1.3 RNA compare
EX28DRAFT_0918 -1.3 -1.2 Ogr/Delta-like zinc finger compare
EX28DRAFT_0770 -1.3 -1.7 Transglycosylase SLT domain compare
EX28DRAFT_1596 -1.2 -0.8 Protein of unknown function (DUF1019) compare
EX28DRAFT_0712 -1.2 -1.3 DNA polymerase III, theta subunit compare
EX28DRAFT_2541 -1.2 -1.1 cytochrome o ubiquinol oxidase, subunit III compare
EX28DRAFT_1650 -1.2 -1.6 ribonuclease T compare
EX28DRAFT_2548 -1.2 -1.6 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_3754 -1.2 -0.6 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
EX28DRAFT_1308 -1.1 -1.3 hypothetical protein compare
EX28DRAFT_2539 -1.1 -3.2 cytochrome o ubiquinol oxidase subunit II compare
EX28DRAFT_2957 -1.1 -2.2 glycine cleavage system T protein compare
EX28DRAFT_0861 -1.1 -2.5 Response regulator receiver domain compare
EX28DRAFT_0693 -1.1 -1.1 DNA-binding regulatory protein, YebC/PmpR family compare
EX28DRAFT_2222 -1.1 -3.1 formiminoglutamase (EC 3.5.3.8) compare
EX28DRAFT_4380 -1.1 -0.9 Protein of unknown function (DUF1471) compare
EX28DRAFT_1626 -1.1 -1.8 electron transport complex, RnfABCDGE type, D subunit compare
EX28DRAFT_0360 -1.1 -1.5 RNA compare
EX28DRAFT_0076 -1.0 -1.9 elongation factor 4 compare
EX28DRAFT_1414 -1.0 -1.2 phenylacetate degradation probable enoyl-CoA hydratase paaB compare
EX28DRAFT_2547 -1.0 -1.2 DJ-1 family protein compare
EX28DRAFT_2753 -1.0 -1.8 Rhodanese-related sulfurtransferase compare
EX28DRAFT_0065 -1.0 -1.0 thioredoxin compare
EX28DRAFT_2723 -1.0 -1.8 SsrA-binding protein compare
EX28DRAFT_1772 -1.0 -1.3 methionine-R-sulfoxide reductase compare
EX28DRAFT_0970 -1.0 -2.3 ABC-type antimicrobial peptide transport system, ATPase component compare
EX28DRAFT_1385 -1.0 -1.7 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
EX28DRAFT_0291 -1.0 -1.7 Uncharacterized membrane protein, required for colicin V production compare
EX28DRAFT_2974 -1.0 -3.9 transketolase, bacterial and yeast compare
EX28DRAFT_3185 -1.0 -1.6 transcriptional regulator, DeoR family compare
EX28DRAFT_4273 -1.0 -2.3 carbohydrate kinase, thermoresistant glucokinase family compare
EX28DRAFT_1412 -1.0 -1.8 phenylacetic acid degradation protein PaaD compare
EX28DRAFT_0545 -1.0 -1.2 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_0324 -1.0 -1.9 NADH-quinone oxidoreductase, E subunit compare
EX28DRAFT_4123 -1.0 -2.0 transcriptional regulator, DeoR family compare
EX28DRAFT_0166 -0.9 -5.0 polyphosphate kinase 1 compare
EX28DRAFT_1059 -0.9 -1.4 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog compare
EX28DRAFT_1565 -0.9 -1.0 Domain of unknown function (DUF1789) compare
EX28DRAFT_2532 -0.9 -2.7 RNA compare
EX28DRAFT_1620 -0.9 -1.0 hypothetical protein compare
EX28DRAFT_1839 -0.9 -3.5 phosphate:acyl-[acyl carrier protein] acyltransferase compare
EX28DRAFT_4461 -0.9 -2.1 4-alpha-L-fucosyltransferase glycosyl transferase group 56 compare
EX28DRAFT_2110 -0.9 -2.0 hypothetical protein compare
EX28DRAFT_1382 -0.9 -1.0 transcriptional regulator, TetR family compare
EX28DRAFT_0477 -0.9 -1.9 RNA compare
EX28DRAFT_4441 -0.9 -2.7 acetolactate synthase, small subunit (EC 2.2.1.6) compare
EX28DRAFT_4341 -0.9 -1.4 Protein-disulfide isomerase compare
EX28DRAFT_3929 -0.9 -2.1 Predicted Zn-dependent hydrolases of the beta-lactamase fold compare
EX28DRAFT_4350 -0.8 -0.7 nitrogen regulation protein NR(I) compare
EX28DRAFT_4183 -0.8 -2.5 FKBP-type peptidyl-prolyl cis-trans isomerases 1 compare
EX28DRAFT_1941 -0.8 -1.1 Protein of unknown function (DUF4089) compare
EX28DRAFT_3777 -0.8 -2.2 transcriptional antiterminator, Rof compare
EX28DRAFT_0579 -0.8 -0.9 Uncharacterized protein conserved in bacteria (DUF2256) compare
EX28DRAFT_3311 -0.8 -0.8 ribosomal protein L11 methyltransferase compare
EX28DRAFT_0118 -0.8 -1.7 SseB protein C-terminal domain/SseB protein N-terminal domain compare
EX28DRAFT_3377 -0.8 -2.0 rRNA methylase, putative, group 3 compare
EX28DRAFT_2544 -0.8 -2.7 Arabinose efflux permease compare
EX28DRAFT_1230 -0.8 -1.6 tellurite resistance protein TehB compare
EX28DRAFT_2851 -0.8 -2.0 phosphoadenosine phosphosulfate reductase, thioredoxin dependent compare
EX28DRAFT_2214 -0.8 -1.2 malonyl-acyl carrier protein O-methyltransferase BioC compare
EX28DRAFT_0921 -0.8 -0.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3375 -0.8 -0.8 transcriptional regulator, BadM/Rrf2 family compare
EX28DRAFT_2543 -0.8 -2.5 protoheme IX farnesyltransferase compare
EX28DRAFT_2485 -0.8 -2.5 DNA replication and repair protein RecR compare
EX28DRAFT_4061 -0.8 -2.4 NADPH-glutathione reductase (EC 1.8.1.7) compare
EX28DRAFT_1330 -0.8 -1.7 hypothetical protein compare
EX28DRAFT_2867 -0.8 -3.2 glycerate kinase compare
EX28DRAFT_2885 -0.8 -2.0 Bacterial protein of unknown function (DUF903) compare
EX28DRAFT_1527 -0.8 -1.5 hypothetical protein compare
EX28DRAFT_4475 -0.8 -2.5 Adenylate cyclase compare
EX28DRAFT_4110 -0.8 -1.6 hypothetical protein compare
EX28DRAFT_0084 -0.7 -1.6 4Fe-4S dicluster domain compare
EX28DRAFT_0069 -0.7 -0.9 Superfamily II DNA and RNA helicases compare
EX28DRAFT_2677 -0.7 -0.7 hypothetical protein compare
EX28DRAFT_1016 -0.7 -1.5 Uncharacterized conserved protein compare
EX28DRAFT_0922 -0.7 -1.2 TonB family C-terminal domain compare
EX28DRAFT_4158 -0.7 -2.1 tryptophanyl-tRNA synthetase (EC 6.1.1.2) compare
EX28DRAFT_1360 -0.7 -1.4 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0312 -0.7 -1.9 phosphate acetyltransferase compare
EX28DRAFT_2796 -0.7 -2.5 transcriptional regulator, DeoR family compare
EX28DRAFT_2878 -0.7 -4.1 serine transporter compare
EX28DRAFT_1670 -0.7 -1.7 ABC-type polar amino acid transport system, ATPase component compare
EX28DRAFT_4191 -0.7 -1.5 small GTP-binding protein domain compare
EX28DRAFT_0228 -0.7 -0.8 tRNA compare
EX28DRAFT_0058 -0.7 -2.1 23S compare
EX28DRAFT_3901 -0.7 -2.6 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
EX28DRAFT_4203 -0.7 -0.6 phosphonates metabolism transcriptional regulator PhnF compare
EX28DRAFT_1278 -0.7 -1.5 hypothetical protein compare
EX28DRAFT_0362 -0.7 -3.5 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
EX28DRAFT_2425 -0.7 -0.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2075 -0.7 -1.9 type II secretion system protein H compare
EX28DRAFT_2873 -0.7 -0.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3645 -0.7 -2.4 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_4362 -0.7 -1.9 transcriptional regulator, DeoR family compare
EX28DRAFT_0779 -0.7 -1.1 hypothetical protein compare
EX28DRAFT_3056 -0.7 -1.1 TIGR00156 family protein compare
EX28DRAFT_0594 -0.7 -0.6 T/G mismatch-specific endonuclease (EC 3.1.-.-) compare
EX28DRAFT_1347 -0.6 -1.9 transcriptional regulator, DeoR family compare
EX28DRAFT_2585 -0.6 -1.0 pyrroline-5-carboxylate reductase compare
EX28DRAFT_3137 -0.6 -0.7 Predicted transcriptional regulators compare
EX28DRAFT_2178 -0.6 -2.4 hypothetical protein compare
EX28DRAFT_4359 -0.6 -1.0 Tagatose-1,6-bisphosphate aldolase compare
EX28DRAFT_2148 -0.6 -2.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4425 -0.6 -2.5 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
EX28DRAFT_2774 -0.6 -3.0 glutamate-cysteine ligase (EC 6.3.2.2) compare
EX28DRAFT_4224 -0.6 -2.1 Predicted double-glycine peptidase compare
EX28DRAFT_2955 -0.6 -3.8 glycine dehydrogenase (decarboxylating) compare
EX28DRAFT_1881 -0.6 -4.2 Membrane glycosyltransferase compare
EX28DRAFT_4534 -0.6 -1.7 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
EX28DRAFT_1847 -0.6 -3.2 Transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in stress experiments

For stress casamino acids across organisms