Experiment set1IT059 for Agrobacterium fabrum C58

Compare to:

D-Ribose carbon source

200 most important genes:

  gene name fitness t score description  
Atu0432 -7.4 -7.3 O-succinylhomoserine sulfhydrylase compare
Atu2709 -7.1 -16.6 3-isopropylmalate dehydratase, large subunit compare
Atu0038 -7.1 -6.9 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1687 -7.1 -9.6 anthranilate phosphoribosyltransferase compare
Atu2289 -7.0 -15.8 anthranilate synthase component I and II compare
Atu1844 -7.0 -4.8 Phosphoribosylformylglycinamidine synthetase compare
Atu3754 -7.0 -8.9 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2264 -6.9 -12.4 2-isopropylmalate synthase compare
Atu0679 -6.8 -6.6 ATP phosphoribosyltransferase compare
Atu1141 -6.7 -7.9 Phosphoribosylglycinamide synthetase compare
Atu2718 -6.7 -7.9 homoserine O-succinyltransferase compare
Atu2040 -6.6 -6.4 phosphoserine phosphatase compare
Atu0298 -6.5 -4.5 orotidine 5 compare
Atu0678 -6.3 -6.1 histidyl-tRNA synthetase compare
Atu3706 -6.3 -9.6 D-3-phosphoglycerate dehydrogenase compare
Atu0099 -6.2 -11.9 prephenate dehydratase compare
Atu2036 -6.2 -16.9 acetolactate synthase III, large subunit compare
Atu2791 -5.9 -8.0 3-isopropylmalate dehydrogenase compare
Atu1688 -5.9 -8.1 indole-3-glycerol-phosphate synthase compare
Atu0017 -5.8 -4.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0030 -5.8 -2.4 phosphocarrier protein HPr compare
Atu2726 -5.7 -22.8 pyruvate carboxylase compare
Atu1075 -5.6 -8.6 amidophosphoribosyltransferase compare
Atu0043 -5.6 -3.8 imidazoleglycerol-phosphate dehydratase compare
Atu2650 -5.6 -14.8 glycerol-3-phosphate dehydrogenase compare
Atu1205 -5.5 -16.6 threonine dehydratase compare
Atu3707 -5.5 -5.3 phosphoserine aminotransferase compare
Atu0486 -5.5 -7.3 dihydroorotate dehydrogenase compare
Atu0039 -5.4 -3.7 imidazoleglycerol-phosphate synthase cyclase compare
Atu0400 -5.4 -6.3 orotate phosphoribosyltransferase compare
Atu1307 -5.3 -6.3 dihydroorotase compare
Atu3755 -5.3 -7.2 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1140 -5.3 -5.1 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1750 -5.2 -4.7 phosphoribosyl c-AMP cyclohydrolase compare
Atu0537 -5.2 -9.3 histidinol dehydrogenase compare
Atu1845 -5.1 -5.9 phosphoribosylformylglycinamidine synthase I compare
Atu2790 -5.0 -2.7 3-isopropylmalate dehydratase, small subunit compare
Atu1850 -4.9 -6.3 phosphoribosylformylglycinamidine synthetase II compare
Atu3482 -4.9 -8.6 pantoate--beta-alanine ligase compare
Atu1308 -4.8 -8.0 aspartate carbamoyl transferase catalytic subunit compare
Atu1588 -4.8 -8.7 homoserine dehydrogenase compare
Atu0399 -4.7 -7.7 dihydroorotase compare
Atu3483 -4.6 -6.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu0647 -4.4 -8.4 phosphoribosylamine--glycine ligase compare
Atu3885 -3.9 -7.7 inositol monophosphatase compare
Atu6098 -3.9 -1.5 transcriptional regulator, HTH family compare
Atu1030 -3.8 -2.7 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0040 -3.7 -2.1 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2015 -3.5 -12.8 aminotransferase compare
Atu0641 -3.3 -4.6 hypothetical protein compare
Atu0659 -3.3 -7.7 NTP pyrophosphohydrolase, MutT family compare
Atu0422 -3.3 -3.7 ABC transporter, membrane spanning protein compare
Atu1359 -3.2 -1.8 dnaK deletion suppressor protein compare
Atu0602 -3.2 -13.0 glutamine synthetase compare
Atu0364 -3.0 -10.8 ribokinase conserved
Atu1589 -3.0 -6.7 aminotransferase, class I compare
Atu0999 -3.0 -10.6 magnesium transport protein compare
Atu0421 -2.9 -2.6 ABC transporter, membrane spanning protein compare
Atu0041 -2.9 -3.9 glutamine amidotransferase compare
Atu0601 -2.6 -11.2 oxidoreductase compare
Atu3469 -2.6 -3.7 phosphoglyceromutase compare
Atu2548 -2.4 -16.2 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu3739 -2.4 -4.8 phosphoglycerate kinase compare
Atu1021 -2.4 -4.0 outer membrane protein compare
Atu3730 -2.3 -3.1 hypothetical protein compare
Atu4173 -2.3 -4.4 phosphoenolpyruvate-protein phosphotransferase compare
Atu0062 -2.2 -8.9 transcriptional regulator, ROK family compare
Atu1456 -2.2 -10.0 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu0769 -2.1 -2.4 protoheme IX farnesyltransferase compare
Atu2155 -2.1 -16.2 methionine synthase compare
Atu3783 -2.1 -15.1 glutamate synthase subunit beta compare
Atu3763 -2.1 -2.5 hypothetical protein compare
Atu2125 -2.1 -1.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu1464 -2.0 -9.4 glycine cleavage system T protein, aminomethyltransferase compare
Atu1463 -2.0 -6.9 glycine cleavage system component H compare
Atu1686 -2.0 -11.7 peptidyl-prolyl cis-trans isomerse D compare
Atu4711 -1.9 -8.3 two component sensor kinase compare
Atu3784 -1.9 -14.9 glutamate synthase large subunit compare
Atu1462 -1.8 -11.0 glycine cleavage system protein P2 compare
Atu4217 -1.8 -2.3 TetR family transcriptional regulator compare
Atu4317 -1.8 -3.8 TetR family transcriptional regulator compare
Atu1454 -1.8 -7.7 siroheme synthase compare
Atu2439 -1.8 -2.0 hypothetical protein compare
Atu3731 -1.7 -9.4 5-formyltetrahydrofolate cyclo-ligase compare
Atu0941 -1.7 -1.5 hypothetical protein compare
Atu6114 -1.7 -1.7 hypothetical protein compare
Atu3910 -1.6 -5.0 LamB/YcsF family protein compare
Atu2832 -1.6 -5.7 tRNA modification GTPase compare
Atu0388 -1.5 -8.7 two component sensor kinase compare
Atu4674 -1.5 -9.7 GntR family transcriptional regulator compare
Atu4685 -1.5 -8.4 LacI family transcriptional regulator compare
Atu1446 -1.5 -2.8 two component response regulator compare
Atu2209 -1.5 -6.0 pyrroline-5-carboxylate reductase compare
Atu0434 -1.4 -3.6 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu3663 -1.4 -1.7 hypothetical protein compare
Atu4576 -1.3 -8.2 ROK family transcriptional regulator compare
Atu2044 -1.3 -5.5 HFLC protein compare
Atu5125 -1.3 -5.0 GntR family transcriptional regulator compare
Atu0189 -1.3 -3.3 ABC transporter, membrane spanning protein (peptide) compare
Atu1028 -1.3 -2.6 hypothetical protein compare
Atu2831 -1.2 -5.6 glucose inhibited division protein A compare
Atu2684 -1.2 -2.3 hypothetical protein compare
Atu8056 -1.2 -1.2 hypothetical protein compare
Atu4530 -1.2 -7.4 TetR family transcriptional regulator compare
Atu3997 -1.1 -8.2 biotin synthetase compare
Atu2238 -1.1 -6.5 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu4098 -1.1 -7.1 quinolinate synthetase compare
Atu0977 -1.1 -3.7 serine protease DO-like protease compare
Atu2237 -1.1 -5.0 cytochrome c1 compare
Atu2045 -1.0 -5.1 HFLK protein compare
Atu4702 -1.0 -3.5 GntR family transcriptional regulator compare
Atu2532 -1.0 -4.4 transcriptional regulator, MarR family compare
Atu2123 -1.0 -5.4 methylenetetrahydrofolate reductase compare
Atu4031 -1.0 -7.5 sugar ABC transporter permease compare
Atu1810 -1.0 -1.3 hypothetical protein compare
Atu3289 -1.0 -4.5 thiamine-phosphate pyrophosphorylase compare
Atu3598 -1.0 -2.8 thiol:disulfide interchange protein compare
Atu0332 -1.0 -6.3 RNA polymerase sigma-54 factor compare
Atu2747 -1.0 -6.8 hypothetical protein compare
Atu4232 -1.0 -4.6 GntR family transcriptional regulator compare
Atu2207 -1.0 -2.4 two component sensor kinase compare
Atu6165 -1.0 -1.0 hypothetical protein compare
Atu0029 -0.9 -4.3 S-adenosylhomocysteine hydrolase compare
Atu3908 -0.9 -5.7 GntR family transcriptional regulator compare
Atu0190 -0.9 -5.2 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu4096 -0.9 -4.8 nicotinate-nucleotide pyrophosphorylase compare
Atu0660 -0.9 -5.0 hydrolase compare
Atu0981 -0.9 -6.8 glutamate-ammonia-ligase adenylyltransferase compare
Atu3144 -0.9 -3.5 GntR family transcriptional regulator compare
Atu1074 -0.9 -5.7 NAD/NADP dependent oxidoreductase compare
Atu8115 -0.9 -3.0 Hypothetical Protein compare
Atu2239 -0.9 -2.7 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0141 -0.9 -1.4 cytochrome O ubiquinol oxidase subunit I compare
Atu4346 -0.9 -4.7 hypothetical protein compare
Atu3014 -0.9 -2.0 hypothetical protein compare
Atu1774 -0.9 -4.5 ABC transporter, substrate binding protein (peptide) compare
Atu1242 -0.9 -5.8 cytochrome oxidase assembly factor compare
Atu4773 -0.9 -1.2 two component response regulator compare
Atu0188 -0.9 -2.5 ABC transporter, membrane spanning protein (peptide) compare
Atu2569 -0.8 -6.3 thiamine biosynthesis protein compare
Atu0912 -0.8 -1.1 Na+/H+ antiporter compare
Atu4635 -0.8 -3.1 hypothetical protein compare
Atu3290 -0.8 -5.8 phosphomethylpyrimidine kinase compare
Atu3017 -0.8 -1.2 phosphoglyceromutase compare
Atu2376 -0.8 -0.6 hypothetical protein compare
Atu4030 -0.8 -5.0 sugar ABC transporter permease compare
Atu3963 -0.8 -4.2 GntR family transcriptional regulator compare
Atu0768 -0.8 -5.3 cytochrome-c oxidase chain I compare
Atu1285 -0.8 -3.7 metal dependent hydrolase compare
Atu4364 -0.8 -5.5 LacI family transcriptional regulator compare
Atu2554 -0.8 -2.1 lysyl-tRNA synthetase compare
Atu3613 -0.8 -3.7 hypothetical protein compare
Atu1455 -0.8 -2.2 hypothetical protein compare
Atu0300 -0.8 -3.4 methyltransferase compare
Atu0845 -0.8 -2.3 hypothetical protein compare
Atu0658 -0.8 -4.8 phosphate permease compare
Atu3240 -0.8 -5.8 ROK family transcriptional regulator compare
Atu2606 -0.8 -2.9 transcriptional regulator, GntR family compare
Atu5468 -0.8 -0.9 hypothetical protein compare
Atu4032 -0.8 -5.4 sugar ABC transporter ATPase compare
Atu2738 -0.7 -3.4 nucleoside-diphosphate-sugar epimerase compare
Atu1851 -0.7 -2.2 BolA/YrbA family protein compare
Atu1419 -0.7 -3.3 transcriptional regulator, GntR family compare
Atu0086 -0.7 -0.7 ribosome-binding factor A compare
Atu0598 -0.7 -4.2 phosphogluconate dehydratase compare
Atu0101 -0.7 -2.4 cytochrome c compare
Atu2349 -0.7 -1.7 hypothetical protein compare
Atu8054 -0.7 -0.4 hypothetical protein compare
Atu0767 -0.7 -3.4 cytochrome c oxidase subunit II compare
Atu1667 -0.7 -1.6 hypothetical protein compare
Atu1570 -0.7 -0.8 hypothetical protein compare
Atu2682 -0.7 -2.2 hypothetical protein compare
Atu4845 -0.7 -5.2 sugar ABC transporter permease compare
Atu1705 -0.7 -2.3 SEC-independent protein translocase protein compare
Atu1225 -0.7 -1.3 hypothetical protein compare
Atu1546 -0.7 -2.1 transcriptional regulator, MerR family compare
Atu2245 -0.7 -4.7 Na+/Pi-cotransporter compare
Atu4541 -0.7 -2.9 carboxymuconolactone decarboxylase compare
Atu2464 -0.7 -2.3 formyltetrahydrofolate deformylase compare
Atu2347 -0.7 -3.6 ABC transporter, nucleotide binding/ATPase protein (sugar) compare
Atu1685 -0.7 -0.9 hypothetical protein compare
Atu2584 -0.7 -2.9 hypothetical protein compare
Atu0065 -0.7 -4.5 ABC transporter, nucleotide binding/ATPase protein (sugar) compare
Atu2346 -0.7 -5.0 ABC transporter, membrane spanning protein (sugar) compare
Atu8118 -0.7 -2.5 putative universal stress protein compare
Atu5464 -0.7 -4.1 IclR family transcriptional regulator compare
Atu2809 -0.7 -4.1 cobalamin biosynthesis protein compare
Atu0771 -0.7 -3.7 cytochrome c oxidase subunit III compare
Atu5164 -0.6 -0.7 type IV secretion protein AvhB3 compare
Atu2796 -0.6 -2.6 precorrin-4 C11-methyltransferase compare
Atu1204 -0.6 -3.2 potassium uptake protein compare
Atu5513 -0.6 -1.5 cold shock protein compare
Atu2804 -0.6 -4.4 cobaltochelatase subunit compare
Atu3511 -0.6 -2.5 glutaredoxin compare
Atu2067 -0.6 -0.7 hypothetical protein compare
Atu6112 -0.6 -2.1 conserved hypothetical protein compare
Atu1729 -0.6 -2.5 putative molybdenum cofactor biosynthesis protein compare
Atu0368 -0.6 -2.9 tRNA pseudouridine synthase I compare
Atu3461 -0.6 -2.1 GntR family transcriptional regulator compare
Atu8191 -0.6 -1.4 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source D-Ribose in Agrobacterium fabrum C58

For carbon source D-Ribose across organisms