Experiment set1IT058 for Variovorax sp. OAS795

Compare to:

D-Glucuronic Acid carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS20615 -6.8 -6.7 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS10350 -5.3 -7.2 NAD(P)-dependent oxidoreductase conserved
ABID97_RS23225 -5.0 -9.0 glutamate synthase-related protein compare
ABID97_RS01565 -5.0 -8.6 DNA starvation/stationary phase protection protein compare
ABID97_RS15380 -4.9 -10.5 nitrite/sulfite reductase compare
ABID97_RS16595 -4.5 -5.1 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS10340 -4.5 -3.0 TRAP transporter substrate-binding protein compare
ABID97_RS10335 -4.3 -4.2 TRAP transporter small permease compare
ABID97_RS14095 -4.3 -4.2 PAS domain S-box protein compare
ABID97_RS06575 -4.2 -5.7 trehalose-phosphatase compare
ABID97_RS20425 -4.2 -2.9 DUF2818 family protein compare
ABID97_RS17590 -4.1 -10.8 endopeptidase La compare
ABID97_RS03680 -3.9 -4.7 lysophospholipid transporter LplT compare
ABID97_RS10330 -3.9 -6.1 TRAP transporter large permease conserved
ABID97_RS03110 -3.9 -6.5 helix-turn-helix transcriptional regulator compare
ABID97_RS06190 -3.8 -6.9 division/cell wall cluster transcriptional repressor MraZ compare
ABID97_RS10375 -3.8 -2.6 glucarate dehydratase compare
ABID97_RS16535 -3.7 -5.6 arginine/lysine/ornithine decarboxylase compare
ABID97_RS04610 -3.6 -6.9 potassium transporter Kup compare
ABID97_RS11640 -3.6 -7.6 TetR family transcriptional regulator compare
ABID97_RS07430 -3.5 -9.6 pantoate--beta-alanine ligase compare
ABID97_RS10885 -3.5 -3.4 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS16910 -3.5 -8.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABID97_RS05795 -3.4 -3.7 malate/lactate/ureidoglycolate dehydrogenase compare
ABID97_RS16600 -3.4 -7.4 CysB family HTH-type transcriptional regulator compare
ABID97_RS08425 -3.4 -2.3 tryptophan synthase subunit alpha compare
ABID97_RS01955 -3.4 -6.8 FadR/GntR family transcriptional regulator compare
ABID97_RS05250 -3.4 -2.3 anthranilate synthase component I compare
ABID97_RS15665 -3.3 -7.3 [protein-PII] uridylyltransferase compare
ABID97_RS12140 -3.3 -7.1 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS07000 -3.3 -6.0 threonine ammonia-lyase, biosynthetic compare
ABID97_RS15375 -3.2 -5.4 DUF934 domain-containing protein compare
ABID97_RS10370 -3.2 -2.8 nuclear transport factor 2 family protein compare
ABID97_RS14050 -3.2 -13.0 NAD(P)/FAD-dependent oxidoreductase conserved
ABID97_RS07775 -3.2 -3.7 phosphoribosylglycinamide formyltransferase compare
ABID97_RS13860 -3.2 -5.9 hypothetical protein compare
ABID97_RS23330 -3.1 -6.6 c-type cytochrome compare
ABID97_RS14850 -3.1 -3.8 P-II family nitrogen regulator compare
ABID97_RS07260 -3.0 -6.1 TIM44-like domain-containing protein compare
ABID97_RS23950 -3.0 -10.2 cytochrome c oxidase assembly protein compare
ABID97_RS21150 -2.9 -6.7 FAD-dependent oxidoreductase compare
ABID97_RS02460 -2.9 -14.3 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS02510 -2.9 -19.4 NADP-dependent malic enzyme compare
ABID97_RS22625 -2.9 -11.8 HAMP domain-containing sensor histidine kinase compare
ABID97_RS10060 -2.9 -8.4 FAD-binding oxidoreductase compare
ABID97_RS15590 -2.9 -2.0 disulfide bond formation protein B compare
ABID97_RS01980 -2.9 -6.4 hypothetical protein compare
ABID97_RS17970 -2.9 -6.2 protein TolQ compare
ABID97_RS08570 -2.8 -4.3 ferrous iron transporter B compare
ABID97_RS23940 -2.7 -6.5 cytochrome c oxidase subunit 3 compare
ABID97_RS09180 -2.7 -3.3 DNA polymerase I compare
ABID97_RS10295 -2.7 -1.7 winged helix-turn-helix transcriptional regulator compare
ABID97_RS22620 -2.7 -6.5 response regulator transcription factor compare
ABID97_RS24920 -2.7 -1.9 Holliday junction branch migration protein RuvA compare
ABID97_RS10365 -2.7 -5.5 5-dehydro-4-deoxyglucarate dehydratase conserved
ABID97_RS23230 -2.7 -11.4 transposase compare
ABID97_RS13450 -2.7 -2.5 TetR/AcrR family transcriptional regulator compare
ABID97_RS15360 -2.7 -6.6 GTP-binding protein compare
ABID97_RS10320 -2.7 -2.6 glucose 1-dehydrogenase compare
ABID97_RS14625 -2.7 -3.6 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS17635 -2.7 -3.6 presqualene diphosphate synthase HpnD compare
ABID97_RS14260 -2.6 -6.6 FtsH protease activity modulator HflK compare
ABID97_RS15370 -2.6 -10.3 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS23220 -2.6 -1.4 glutamate synthase subunit beta compare
ABID97_RS09275 -2.6 -4.7 polyprenyl synthetase family protein compare
ABID97_RS21195 -2.6 -7.8 ABC transporter substrate-binding protein compare
ABID97_RS22760 -2.6 -5.6 TetR/AcrR family transcriptional regulator compare
ABID97_RS13570 -2.6 -4.8 IclR family transcriptional regulator compare
ABID97_RS25015 -2.6 -1.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS07435 -2.6 -5.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS15575 -2.5 -4.2 sulfate ABC transporter permease subunit CysT compare
ABID97_RS13990 -2.5 -1.8 amino acid aminotransferase compare
ABID97_RS19065 -2.5 -5.8 GntR family transcriptional regulator compare
ABID97_RS28635 -2.5 -2.3 IclR family transcriptional regulator compare
ABID97_RS10880 -2.5 -3.2 Mth938-like domain-containing protein compare
ABID97_RS14890 -2.5 -6.2 acetolactate synthase small subunit compare
ABID97_RS23930 -2.5 -10.4 SURF1 family protein compare
ABID97_RS10345 -2.5 -4.8 SMP-30/gluconolactonase/LRE family protein compare
ABID97_RS25085 -2.5 -2.4 2-hydroxychromene-2-carboxylate isomerase compare
ABID97_RS06365 -2.5 -1.7 TlpA disulfide reductase family protein compare
ABID97_RS15580 -2.4 -3.6 sulfate ABC transporter permease subunit CysW compare
ABID97_RS02455 -2.4 -4.6 nucleotidyltransferase family protein compare
ABID97_RS21180 -2.4 -5.8 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC compare
ABID97_RS01200 -2.4 -1.4 L-idonate 5-dehydrogenase compare
ABID97_RS23915 -2.4 -2.3 heme o synthase compare
ABID97_RS05260 -2.4 -1.5 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS07345 -2.4 -4.0 hypothetical protein compare
ABID97_RS15465 -2.4 -13.1 sulfate ABC transporter substrate-binding protein compare
ABID97_RS23390 -2.4 -9.4 RNA pyrophosphohydrolase compare
ABID97_RS12660 -2.3 -1.8 formylmethanofuran--tetrahydromethanopterin N-formyltransferase compare
ABID97_RS17360 -2.3 -1.5 alpha/beta hydrolase compare
ABID97_RS02850 -2.3 -6.2 response regulator transcription factor compare
ABID97_RS24170 -2.3 -4.7 ATP-binding protein compare
ABID97_RS02600 -2.3 -2.2 homoserine O-acetyltransferase compare
ABID97_RS04505 -2.3 -1.6 ferric iron uptake transcriptional regulator compare
ABID97_RS24500 -2.2 -5.3 oxalyl-CoA decarboxylase compare
ABID97_RS03805 -2.2 -1.3 ATP-binding protein compare
ABID97_RS06345 -2.2 -2.1 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS06420 -2.2 -7.4 ATP-binding protein compare
ABID97_RS23920 -2.2 -7.1 COX15/CtaA family protein compare
ABID97_RS23965 -2.2 -9.4 cytochrome c oxidase subunit II compare
ABID97_RS00540 -2.2 -7.3 HAMP domain-containing sensor histidine kinase compare
ABID97_RS23960 -2.2 -11.3 cytochrome c oxidase subunit I compare
ABID97_RS03495 -2.1 -10.4 TetR family transcriptional regulator compare
ABID97_RS25340 -2.1 -5.7 apolipoprotein N-acyltransferase compare
ABID97_RS21185 -2.1 -6.3 carbohydrate ABC transporter permease compare
ABID97_RS04245 -2.1 -2.2 acyl-CoA thioesterase compare
ABID97_RS11170 -2.1 -4.3 GntR family transcriptional regulator compare
ABID97_RS08010 -2.1 -5.8 alpha-hydroxy acid oxidase compare
ABID97_RS00335 -2.1 -6.8 c-type cytochrome compare
ABID97_RS25870 -2.1 -5.2 IlvD/Edd family dehydratase compare
ABID97_RS02855 -2.1 -6.9 sensor histidine kinase N-terminal domain-containing protein compare
ABID97_RS12180 -2.1 -1.4 hypothetical protein compare
ABID97_RS24045 -2.0 -4.2 type II toxin-antitoxin system prevent-host-death family antitoxin compare
ABID97_RS05700 -2.0 -8.6 GDP-mannose 4,6-dehydratase compare
ABID97_RS16695 -2.0 -10.5 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS17600 -2.0 -1.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABID97_RS09430 -2.0 -1.0 monovalent cation/H(+) antiporter subunit G compare
ABID97_RS15365 -2.0 -3.6 sulfate adenylyltransferase subunit CysD compare
ABID97_RS05275 -2.0 -1.3 anthranilate phosphoribosyltransferase compare
ABID97_RS21910 -1.9 -8.2 hypothetical protein compare
ABID97_RS20405 -1.9 -5.2 MarR family transcriptional regulator compare
ABID97_RS14665 -1.9 -1.3 UvrD-helicase domain-containing protein compare
ABID97_RS07410 -1.9 -4.0 carboxylating nicotinate-nucleotide diphosphorylase compare
ABID97_RS08445 -1.9 -5.6 FimV/HubP family polar landmark protein compare
ABID97_RS23925 -1.9 -8.2 hypothetical protein compare
ABID97_RS06430 -1.9 -7.4 cytochrome c biogenesis protein CcsA compare
ABID97_RS04630 -1.9 -3.9 glutathione synthase compare
ABID97_RS16065 -1.8 -1.6 PDR/VanB family oxidoreductase compare
ABID97_RS20095 -1.8 -1.2 DNA topoisomerase IV subunit B compare
ABID97_RS24390 -1.8 -7.4 c-type cytochrome compare
ABID97_RS04760 -1.8 -1.2 SPOR domain-containing protein compare
ABID97_RS07415 -1.8 -10.2 quinolinate synthase NadA compare
ABID97_RS23455 -1.8 -1.7 hypothetical protein compare
ABID97_RS10720 -1.8 -4.4 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABID97_RS04480 -1.8 -1.2 magnesium/cobalt transporter CorA compare
ABID97_RS14100 -1.8 -7.0 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABID97_RS14975 -1.8 -4.0 hypothetical protein compare
ABID97_RS20610 -1.8 -5.3 DNA-binding protein YbiB compare
ABID97_RS17225 -1.8 -7.6 polyhydroxyalkanoate synthesis repressor PhaR compare
ABID97_RS00585 -1.8 -6.9 TlpA disulfide reductase family protein compare
ABID97_RS16690 -1.8 -5.4 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS20025 -1.7 -1.8 D-glycerate dehydrogenase compare
ABID97_RS17640 -1.7 -1.8 hydroxysqualene dehydroxylase HpnE compare
ABID97_RS11700 -1.7 -5.9 GntR family transcriptional regulator compare
ABID97_RS07405 -1.7 -8.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS21770 -1.7 -8.8 aminopeptidase N compare
ABID97_RS23450 -1.7 -1.7 MBOAT family protein compare
ABID97_RS06060 -1.7 -1.4 hypothetical protein compare
ABID97_RS23325 -1.7 -4.6 cytochrome c biogenesis protein ResB compare
ABID97_RS14990 -1.7 -1.4 hypothetical protein compare
ABID97_RS02110 -1.7 -9.5 type IV pilus modification protein PilV compare
ABID97_RS09270 -1.7 -2.8 exodeoxyribonuclease VII small subunit compare
ABID97_RS16785 -1.6 -1.1 transporter compare
ABID97_RS01935 -1.6 -7.7 3-oxo-tetronate kinase compare
ABID97_RS17895 -1.6 -6.6 transcriptional regulator NrdR compare
ABID97_RS17570 -1.6 -2.6 DUF6806 family protein compare
ABID97_RS16915 -1.6 -4.8 ATP-dependent Clp protease adapter ClpS compare
ABID97_RS14265 -1.6 -5.3 protease modulator HflC compare
ABID97_RS10800 -1.6 -5.0 alkyl hydroperoxide reductase subunit C compare
ABID97_RS05705 -1.6 -11.5 GDP-mannose 4,6-dehydratase compare
ABID97_RS08220 -1.6 -8.2 phosphoenolpyruvate carboxylase compare
ABID97_RS20980 -1.6 -1.2 transcriptional repressor compare
ABID97_RS28600 -1.6 -1.0 aspartate aminotransferase family protein compare
ABID97_RS03640 -1.6 -3.8 SMP-30/gluconolactonase/LRE family protein compare
ABID97_RS22975 -1.6 -5.6 cytochrome c1 compare
ABID97_RS16430 -1.6 -6.7 type II toxin-antitoxin system RatA family toxin compare
ABID97_RS11105 -1.6 -3.8 DMT family transporter compare
ABID97_RS05750 -1.6 -1.1 glycosyltransferase compare
ABID97_RS00255 -1.6 -8.5 type IV pilus twitching motility protein PilT compare
ABID97_RS23695 -1.5 -7.8 heat-inducible transcriptional repressor HrcA compare
ABID97_RS03115 -1.5 -4.1 2,3-epoxybenzoyl-CoA dihydrolase compare
ABID97_RS16750 -1.5 -7.5 Rid family hydrolase compare
ABID97_RS10905 -1.5 -2.6 gephyrin-like molybdotransferase Glp compare
ABID97_RS14865 -1.5 -3.9 RDD family protein compare
ABID97_RS26350 -1.5 -2.5 ABC transporter substrate-binding protein compare
ABID97_RS17850 -1.5 -0.8 tetratricopeptide repeat protein compare
ABID97_RS07440 -1.5 -8.8 L-aspartate oxidase compare
ABID97_RS17670 -1.5 -3.1 alpha/beta hydrolase compare
ABID97_RS27415 -1.5 -1.3 amino acid ABC transporter ATP-binding protein compare
ABID97_RS23945 -1.5 -2.2 DUF2970 domain-containing protein compare
ABID97_RS05755 -1.5 -1.0 glycosyltransferase compare
ABID97_RS03800 -1.5 -1.0 O-antigen ligase family protein compare
ABID97_RS15570 -1.5 -6.4 sulfate ABC transporter substrate-binding protein compare
ABID97_RS23320 -1.4 -4.5 c-type cytochrome biogenesis protein CcsB compare
ABID97_RS23775 -1.4 -5.6 ABC transporter permease compare
ABID97_RS01925 -1.4 -6.0 2-oxo-tetronate isomerase compare
ABID97_RS15470 -1.4 -2.3 NADPH-dependent FMN reductase compare
ABID97_RS19040 -1.4 -1.2 isocitrate/isopropylmalate dehydrogenase family protein compare
ABID97_RS02115 -1.4 -8.1 PilW family protein compare
ABID97_RS06095 -1.4 -7.5 MBL fold metallo-hydrolase compare
ABID97_RS09595 -1.4 -1.7 Arc family DNA-binding protein compare
ABID97_RS03655 -1.4 -2.4 glycolate oxidase subunit GlcE compare
ABID97_RS02135 -1.4 -5.7 GspH/FimT family pseudopilin compare
ABID97_RS17595 -1.4 -6.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABID97_RS15585 -1.4 -3.2 sulfate ABC transporter ATP-binding protein compare
ABID97_RS03385 -1.4 -9.4 AAA family ATPase compare
ABID97_RS07310 -1.3 -8.1 BLUF domain-containing protein compare
ABID97_RS27085 -1.3 -1.0 DNA alkylation repair protein compare
ABID97_RS14200 -1.3 -3.7 pseudouridine synthase compare


Specific Phenotypes

For 19 genes in this experiment

For carbon source D-Glucuronic Acid in Variovorax sp. OAS795

For carbon source D-Glucuronic Acid across organisms