Experiment set1IT058 for Pseudomonas sp. RS175
Inosine carbon 10 mM
Group: carbon sourceMedia: MME_noCarbon + Inosine (10 mM), pH=7
Culturing: Pseudomonas_RS175_ML2, 96 deep-well microplate; 1.2 mL volume, Aerobic, at 30 (C), shaken=1200 rpm
By: Joshua Elmore on 1-Jul-22
Media components: 9.1 mM Potassium phosphate dibasic trihydrate, 20 mM 3-(N-morpholino)propanesulfonic acid, 4.3 mM Sodium Chloride, 10 mM Ammonium chloride, 0.41 mM Magnesium Sulfate Heptahydrate, 0.07 mM Calcium chloride dihydrate, MME Trace Minerals (0.5 mg/L EDTA tetrasodium tetrahydrate salt, 2 mg/L Ferric chloride, 0.05 mg/L Boric Acid, 0.05 mg/L Zinc chloride, 0.03 mg/L copper (II) chloride dihydrate, 0.05 mg/L Manganese (II) chloride tetrahydrate, 0.05 mg/L Diammonium molybdate, 0.05 mg/L Cobalt chloride hexahydrate, 0.05 mg/L Nickel (II) chloride hexahydrate)
Specific Phenotypes
For 19 genes in this experiment
For carbon source Inosine in Pseudomonas sp. RS175
For carbon source Inosine across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Purine metabolism
- Fructose and mannose metabolism
- Alkaloid biosynthesis I
- Insect hormone biosynthesis
- Biosynthesis of alkaloids derived from shikimate pathway
- Ascorbate and aldarate metabolism
- Ubiquinone and menaquinone biosynthesis
- C21-Steroid hormone metabolism
- Oxidative phosphorylation
- Alanine and aspartate metabolism
- Glycine, serine and threonine metabolism
- Histidine metabolism
- Tyrosine metabolism
- Bisphenol A degradation
- Tryptophan metabolism
- Benzoxazinone biosynthesis
- beta-Alanine metabolism
- Nucleotide sugars metabolism
- Polyketide sugar unit biosynthesis
- Aminosugars metabolism
- Lipopolysaccharide biosynthesis
- Linoleic acid metabolism
- Tetrachloroethene degradation
- Naphthalene and anthracene degradation
- Glyoxylate and dicarboxylate metabolism
- Benzoate degradation via CoA ligation
- Butanoate metabolism
- Nicotinate and nicotinamide metabolism
- Pantothenate and CoA biosynthesis
- Folate biosynthesis
- Retinol metabolism
- Porphyrin and chlorophyll metabolism
- Carotenoid biosynthesis - General
- Phenylpropanoid biosynthesis
- Flavonoid biosynthesis
- Anthocyanin biosynthesis
- Drug metabolism - other enzymes
- Biosynthesis of unsaturated fatty acids
- Biosynthesis of type II polyketide products
MetaCyc Pathways
Pathways that contain genes with specific phenotypes: