Experiment set1IT058 for Escherichia coli BW25113

Compare to:

D-Serine carbon source

Genes with specific phenotypes:

  gene name fitness t score description  
b2366 dsdA -4.5 -5.4 D-serine dehydratase (NCBI) conserved
b2735 ygbI -4.4 -6.0 predicted DNA-binding transcriptional regulator (RefSeq) compare
b1702 pps -3.8 -10.2 phosphoenolpyruvate synthase (NCBI) conserved
b2364 dsdC -3.3 -7.7 DNA-binding transcriptional dual regulator (NCBI) conserved
b3990 thiH -3.0 -10.1 thiamine biosynthesis protein ThiH (NCBI) compare
b4243 yjgF -3.0 -6.8 orf, hypothetical protein (VIMSS) compare
b3124 garK -2.5 -9.9 glycerate kinase I (RefSeq) compare
b0076 leuO -1.5 -11.7 probable transcriptional activator for leuABCD operon (VIMSS) compare
b4166 yjeS -1.4 -6.6 predicted Fe-S electron transport protein (NCBI) compare
b4233 mpl -1.4 -8.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (NCBI) compare
b3438 gntR -1.4 -5.8 DNA-binding transcriptional repressor (NCBI) compare
b3966 btuB -1.3 -9.5 vitamin B12/cobalamin outer membrane transporter (NCBI) compare
b3244 tldD -1.1 -7.7 predicted peptidase (NCBI) compare
b4235 pmbA -1.0 -6.5 predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 (NCBI) compare
b0598 cstA -1.0 -7.0 carbon starvation protein (NCBI) compare
b1854 pykA +1.2 8.4 pyruvate kinase (NCBI) compare
b3523 yhjE +1.4 11.3 predicted transporter (NCBI) compare
b3779 gpp +1.6 13.1 guanosine pentaphosphatase/exopolyphosphatase (NCBI) compare
b0388 aroL +1.7 10.2 shikimate kinase II (NCBI) compare
b1333 uspE +2.0 10.1 stress-induced protein (NCBI) compare
b2587 kgtP +2.2 16.8 alpha-ketoglutarate transporter (NCBI) compare
b0960 b0960 +3.0 24.6 orf, hypothetical protein (VIMSS) compare
b3458 livK +4.9 11.9 leucine transporter subunit (NCBI) compare
b3460 livJ +5.7 52.0 leucine/isoleucine/valine transporter subunit (NCBI) compare
b3454 livF +8.2 56.1 ATP-binding component of leucine transport (VIMSS) compare
b3457 livH +8.2 60.0 leucine/isoleucine/valine transporter subunit (NCBI) compare
b3456 livM +8.5 67.6 leucine/isoleucine/valine transporter subunit (NCBI) compare
b3455 livG +8.5 49.8 leucine/isoleucine/valine transporter subunit (NCBI) compare


Specific phenotypes for carbon source D-Serine across organisms