Experiment set1IT058 for Enterobacter asburiae PDN3

Compare to:

M9 with casamino acids and trichloroethylene 76.3 uM

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_4544 -5.8 -2.2 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_2265 -4.2 -3.1 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_4271 -4.0 -1.5 glycerol-3-phosphate acyltransferase (EC 2.3.1.15) compare
EX28DRAFT_0933 -3.9 -15.4 tryptophan synthase, beta subunit compare
EX28DRAFT_0932 -3.6 -6.7 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
EX28DRAFT_2046 -3.6 -3.2 thiol reductant ABC exporter, CydC subunit compare
EX28DRAFT_3419 -3.3 -13.3 Fructose-1,6-bisphosphatase compare
EX28DRAFT_0934 -3.3 -14.7 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_3711 -3.2 -1.6 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_0936 -3.1 -9.9 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_2252 -3.1 -3.5 TolA protein compare
EX28DRAFT_0046 -3.0 -4.9 shikimate dehydrogenase compare
EX28DRAFT_0328 -3.0 -2.4 NADH:ubiquinone oxidoreductase subunit 1 (chain H) compare
EX28DRAFT_3285 -3.0 -9.9 malate dehydrogenase (NAD) (EC 1.1.1.37) compare
EX28DRAFT_2027 -3.0 -6.4 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_0292 -2.9 -4.5 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_0769 -2.8 -2.1 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF compare
EX28DRAFT_3336 -2.8 -13.8 aspartate ammonia-lyase compare
EX28DRAFT_2267 -2.7 -5.9 succinate dehydrogenase and fumarate reductase iron-sulfur protein compare
EX28DRAFT_2268 -2.7 -7.7 succinate dehydrogenase subunit A (EC 1.3.5.1) compare
EX28DRAFT_2531 -2.7 -4.6 endopeptidase La compare
EX28DRAFT_2263 -2.6 -6.2 succinyl-CoA synthetase, alpha subunit compare
EX28DRAFT_0125 -2.6 -1.3 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_0935 -2.6 -7.6 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
EX28DRAFT_2264 -2.4 -11.2 succinyl-CoA synthetase, beta subunit compare
EX28DRAFT_2269 -2.3 -8.5 succinate dehydrogenase, hydrophobic membrane anchor protein compare
EX28DRAFT_0092 -2.3 -2.5 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_0334 -2.2 -3.3 proton-translocating NADH-quinone oxidoreductase, chain N compare
EX28DRAFT_4153 -2.2 -4.4 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_3079 -2.2 -1.4 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2250 -2.2 -3.7 peptidoglycan-associated lipoprotein compare
EX28DRAFT_0322 -2.2 -9.8 NADH-quinone oxidoreductase, B subunit compare
EX28DRAFT_2270 -2.1 -1.5 succinate dehydrogenase subunit C (EC 1.3.5.1) compare
EX28DRAFT_0333 -2.1 -8.9 proton-translocating NADH-quinone oxidoreductase, chain M compare
EX28DRAFT_1706 -2.1 -8.7 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
EX28DRAFT_3710 -2.0 -7.9 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_3646 -2.0 -5.3 4-hydroxythreonine-4-phosphate dehydrogenase compare
EX28DRAFT_2945 -1.9 -2.4 tyrosine recombinase XerD compare
EX28DRAFT_0038 -1.9 -1.9 K+ transport systems, NAD-binding component compare
EX28DRAFT_0323 -1.8 -7.8 NADH (or F420H2) dehydrogenase, subunit C compare
EX28DRAFT_0111 -1.8 -2.9 FeS cluster assembly scaffold IscU compare
EX28DRAFT_0284 -1.8 -7.4 Phosphoglycerate dehydrogenase and related dehydrogenases compare
EX28DRAFT_0330 -1.8 -3.2 NADH:ubiquinone oxidoreductase subunit 6 (chain J) compare
EX28DRAFT_4507 -1.8 -5.1 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
EX28DRAFT_0331 -1.8 -3.3 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_2958 -1.7 -1.2 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_0531 -1.7 -8.7 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_0325 -1.7 -4.4 NADH-quinone oxidoreductase, F subunit compare
EX28DRAFT_2425 -1.7 -1.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3647 -1.7 -5.3 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_1596 -1.7 -1.2 Protein of unknown function (DUF1019) compare
EX28DRAFT_2259 -1.7 -4.6 Cytochrome bd-type quinol oxidase, subunit 1 compare
EX28DRAFT_4318 -1.7 -5.2 Glucose-6-phosphate isomerase compare
EX28DRAFT_3879 -1.7 -4.9 Glycosyltransferase compare
EX28DRAFT_0332 -1.6 -7.9 proton-translocating NADH-quinone oxidoreductase, chain L compare
EX28DRAFT_0167 -1.6 -2.4 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
EX28DRAFT_0132 -1.6 -5.0 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_0327 -1.6 -5.9 NADH-quinone oxidoreductase, chain G compare
EX28DRAFT_0494 -1.6 -1.3 Protein-tyrosine-phosphatase compare
EX28DRAFT_4475 -1.6 -4.1 Adenylate cyclase compare
EX28DRAFT_4386 -1.6 -2.9 Signal transduction histidine kinase compare
EX28DRAFT_3675 -1.5 -7.8 transcriptional regulator, LacI family compare
EX28DRAFT_0620 -1.5 -1.5 Flagellar protein FliT compare
EX28DRAFT_1609 -1.5 -10.9 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region/hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region compare
EX28DRAFT_2008 -1.5 -7.2 Aspartate/tyrosine/aromatic aminotransferase compare
EX28DRAFT_2045 -1.5 -1.0 thiol reductant ABC exporter, CydD subunit compare
EX28DRAFT_1841 -1.5 -1.2 Predicted metal-binding, possibly nucleic acid-binding protein compare
EX28DRAFT_0329 -1.5 -6.1 NADH-quinone oxidoreductase, chain I compare
EX28DRAFT_0712 -1.5 -1.6 DNA polymerase III, theta subunit compare
EX28DRAFT_0972 -1.4 -2.0 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_2948 -1.4 -7.4 Uncharacterized conserved protein compare
EX28DRAFT_3883 -1.4 -3.8 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_0545 -1.3 -3.4 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_0001 -1.3 -2.5 Elongation factor Tu domain 2/Elongation factor Tu C-terminal domain compare
EX28DRAFT_0291 -1.3 -3.1 Uncharacterized membrane protein, required for colicin V production compare
EX28DRAFT_0948 -1.3 -1.5 hypothetical protein compare
EX28DRAFT_0312 -1.3 -3.1 phosphate acetyltransferase compare
EX28DRAFT_1839 -1.3 -5.5 phosphate:acyl-[acyl carrier protein] acyltransferase compare
EX28DRAFT_2548 -1.2 -1.6 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_2258 -1.2 -1.8 cytochrome d oxidase, subunit II (cydB) compare
EX28DRAFT_0523 -1.2 -1.4 Glycosyltransferase like family 2 compare
EX28DRAFT_0970 -1.2 -3.4 ABC-type antimicrobial peptide transport system, ATPase component compare
EX28DRAFT_3449 -1.2 -2.6 Predicted membrane protein compare
EX28DRAFT_1986 -1.2 -1.2 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_2075 -1.2 -2.3 type II secretion system protein H compare
EX28DRAFT_4405 -1.2 -0.8 ATP-dependent protease HslVU, peptidase subunit compare
EX28DRAFT_0922 -1.2 -1.8 TonB family C-terminal domain compare
EX28DRAFT_0272 -1.1 -1.3 phosphohistidine phosphatase, SixA compare
EX28DRAFT_0926 -1.1 -1.5 Predicted Fe-S-cluster oxidoreductase compare
EX28DRAFT_0593 -1.1 -6.2 DNA-methyltransferase (dcm) compare
EX28DRAFT_0861 -1.1 -5.3 Response regulator receiver domain compare
EX28DRAFT_3282 -1.1 -1.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4156 -1.1 -2.1 ribulose-phosphate 3-epimerase compare
EX28DRAFT_1932 -1.0 -3.3 Mg/Co/Ni transporter MgtE (contains CBS domain) compare
EX28DRAFT_0321 -1.0 -0.9 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
EX28DRAFT_2543 -1.0 -4.8 protoheme IX farnesyltransferase compare
EX28DRAFT_0977 -1.0 -1.7 phage shock protein B compare
EX28DRAFT_2540 -1.0 -3.6 cytochrome o ubiquinol oxidase, subunit I compare
EX28DRAFT_3426 -1.0 -1.2 conserved hypothetical protein EF_0831/AHA_3912 compare
EX28DRAFT_0324 -1.0 -2.5 NADH-quinone oxidoreductase, E subunit compare
EX28DRAFT_4158 -1.0 -2.4 tryptophanyl-tRNA synthetase (EC 6.1.1.2) compare
EX28DRAFT_2541 -1.0 -1.2 cytochrome o ubiquinol oxidase, subunit III compare
EX28DRAFT_0501 -1.0 -2.2 colanic acid biosynthesis acetyltransferase WcaF compare
EX28DRAFT_2532 -1.0 -2.8 RNA compare
EX28DRAFT_1772 -1.0 -2.0 methionine-R-sulfoxide reductase compare
EX28DRAFT_4457 -1.0 -2.7 nucleotide sugar dehydrogenase compare
EX28DRAFT_2973 -0.9 -4.3 erythrose-4-phosphate dehydrogenase compare
EX28DRAFT_1740 -0.9 -0.9 Phosphotransferase system cellobiose-specific component IIA compare
EX28DRAFT_2974 -0.9 -4.8 transketolase, bacterial and yeast compare
EX28DRAFT_4123 -0.9 -2.9 transcriptional regulator, DeoR family compare
EX28DRAFT_2589 -0.9 -0.8 Sigma-S stabilisation anti-adaptor protein compare
EX28DRAFT_2957 -0.9 -2.1 glycine cleavage system T protein compare
EX28DRAFT_1719 -0.9 -1.0 integration host factor, alpha subunit compare
EX28DRAFT_0730 -0.9 -1.2 YobH-like protein compare
EX28DRAFT_2796 -0.9 -3.5 transcriptional regulator, DeoR family compare
EX28DRAFT_3408 -0.9 -2.6 Uncharacterized conserved protein compare
EX28DRAFT_2424 -0.9 -2.8 transcriptional regulator, TetR family compare
EX28DRAFT_0577 -0.9 -2.9 Arabinose efflux permease compare
EX28DRAFT_2873 -0.9 -1.0 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3377 -0.8 -2.2 rRNA methylase, putative, group 3 compare
EX28DRAFT_1050 -0.8 -2.3 luciferase family oxidoreductase, group 1 compare
EX28DRAFT_2724 -0.8 -1.0 RNA compare
EX28DRAFT_4299 -0.8 -1.2 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
EX28DRAFT_4459 -0.8 -3.5 TDP-4-keto-6-deoxy-D-glucose transaminase compare
EX28DRAFT_4437 -0.8 -2.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0469 -0.8 -2.6 hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
EX28DRAFT_0715 -0.8 -1.9 Protein of unknown function (DUF2511) compare
EX28DRAFT_2539 -0.8 -3.0 cytochrome o ubiquinol oxidase subunit II compare
EX28DRAFT_2222 -0.8 -4.8 formiminoglutamase (EC 3.5.3.8) compare
EX28DRAFT_0803 -0.8 -1.6 Protein of avirulence locus involved in temperature-dependent protein secretion compare
EX28DRAFT_1565 -0.8 -1.2 Domain of unknown function (DUF1789) compare
EX28DRAFT_3058 -0.8 -1.5 Signal transduction histidine kinase compare
EX28DRAFT_0166 -0.7 -4.7 polyphosphate kinase 1 compare
EX28DRAFT_0081 -0.7 -2.3 DNA replication and repair protein RecO compare
EX28DRAFT_2472 -0.7 -0.6 Membrane protein implicated in regulation of membrane protease activity compare
EX28DRAFT_1888 -0.7 -2.9 Curlin associated repeat compare
EX28DRAFT_2546 -0.7 -3.3 2-dehydropantoate 2-reductase compare
EX28DRAFT_1376 -0.7 -1.3 hypothetical protein compare
EX28DRAFT_3002 -0.7 -1.8 triphosphoribosyl-dephospho-CoA synthase CitG compare
EX28DRAFT_4436 -0.7 -2.2 Transcriptional regulator compare
EX28DRAFT_1000 -0.7 -1.3 intracellular protease, PfpI family compare
EX28DRAFT_0901 -0.7 -1.0 hypothetical protein compare
EX28DRAFT_4362 -0.7 -2.9 transcriptional regulator, DeoR family compare
EX28DRAFT_0058 -0.7 -2.5 23S compare
EX28DRAFT_4348 -0.7 -1.2 oxygen-independent coproporphyrinogen III oxidase compare
EX28DRAFT_1016 -0.7 -2.1 Uncharacterized conserved protein compare
EX28DRAFT_3611 -0.7 -0.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
EX28DRAFT_4121 -0.7 -2.0 Rhodanese-related sulfurtransferase compare
EX28DRAFT_3126 -0.7 -2.4 P2-like prophage tail protein X compare
EX28DRAFT_4262 -0.7 -1.0 phage shock protein G compare
EX28DRAFT_2485 -0.7 -2.7 DNA replication and repair protein RecR compare
EX28DRAFT_0313 -0.7 -2.9 acetate kinase compare
EX28DRAFT_3614 -0.7 -4.6 aspartate kinase (EC 2.7.2.4) compare
EX28DRAFT_0076 -0.6 -2.3 elongation factor 4 compare
EX28DRAFT_1493 -0.6 -2.8 Transcriptional regulator/sugar kinase compare
EX28DRAFT_1305 -0.6 -2.8 hypothetical protein compare
EX28DRAFT_1385 -0.6 -1.6 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
EX28DRAFT_0764 -0.6 -1.9 fatty acid metabolism transcriptional regulator FadR compare
EX28DRAFT_2110 -0.6 -1.6 hypothetical protein compare
EX28DRAFT_2955 -0.6 -4.7 glycine dehydrogenase (decarboxylating) compare
EX28DRAFT_1356 -0.6 -1.9 Predicted O-methyltransferase compare
EX28DRAFT_1059 -0.6 -1.3 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog compare
EX28DRAFT_0065 -0.6 -0.8 thioredoxin compare
EX28DRAFT_3540 -0.6 -1.7 4-hydroxyphenylacetate catabolism regulatory protein HpaA compare
EX28DRAFT_1911 -0.6 -3.9 L-proline dehydrogenase (EC 1.5.99.8)/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) compare
EX28DRAFT_4425 -0.6 -3.8 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
EX28DRAFT_0423 -0.6 -1.2 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
EX28DRAFT_3929 -0.6 -1.4 Predicted Zn-dependent hydrolases of the beta-lactamase fold compare
EX28DRAFT_0757 -0.6 -2.4 septum site-determining protein MinD compare
EX28DRAFT_1093 -0.6 -1.8 uncharacterized peroxidase-related enzyme compare
EX28DRAFT_1771 -0.6 -0.6 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1895 -0.6 -2.2 Histidinol phosphatase and related hydrolases of the PHP family compare
EX28DRAFT_1530 -0.6 -0.8 hypothetical protein compare
EX28DRAFT_1009 -0.6 -1.4 hypothetical protein compare
EX28DRAFT_2859 -0.6 -1.8 hypothetical protein compare
EX28DRAFT_1152 -0.6 -2.0 Metallo-beta-lactamase superfamily compare
EX28DRAFT_1165 -0.6 -2.7 heavy metal response regulator compare
EX28DRAFT_1881 -0.6 -3.8 Membrane glycosyltransferase compare
EX28DRAFT_3958 -0.6 -1.1 hypothetical protein compare
EX28DRAFT_2867 -0.6 -2.4 glycerate kinase compare
EX28DRAFT_2883 -0.6 -2.7 Transcriptional regulator compare
EX28DRAFT_3899 -0.6 -2.2 (p)ppGpp synthetase, RelA/SpoT family compare
EX28DRAFT_3901 -0.6 -2.9 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
EX28DRAFT_4341 -0.6 -1.8 Protein-disulfide isomerase compare
EX28DRAFT_3472 -0.6 -1.8 Phage integrase family compare
EX28DRAFT_0245 -0.6 -1.9 type IV / VI secretion system protein, DotU family compare
EX28DRAFT_1039 -0.6 -1.0 Sortase and related acyltransferases compare
EX28DRAFT_1527 -0.6 -1.6 hypothetical protein compare
EX28DRAFT_4380 -0.6 -0.7 Protein of unknown function (DUF1471) compare
EX28DRAFT_4463 -0.6 -2.7 Teichoic acid biosynthesis proteins compare
EX28DRAFT_3481 -0.5 -1.3 hypothetical protein compare
EX28DRAFT_4421 -0.5 -0.7 N-acetylglutamate kinase (EC 2.7.2.8) compare
EX28DRAFT_4472 -0.5 -2.7 Uncharacterized enzyme of heme biosynthesis compare
EX28DRAFT_2084 -0.5 -2.3 Negative regulator of beta-lactamase expression compare
EX28DRAFT_0434 -0.5 -0.8 hypothetical protein compare
EX28DRAFT_1236 -0.5 -1.3 Transcriptional regulator compare
EX28DRAFT_2721 -0.5 -1.5 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4513 -0.5 -3.5 Trk-type K+ transport systems, membrane components compare
EX28DRAFT_3281 -0.5 -3.8 Predicted ATPase compare
EX28DRAFT_3572 -0.5 -3.5 siderophore-iron reductase FhuF compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in stress experiments

For stress casamino acids across organisms