Experiment set1IT058 for Agrobacterium fabrum C58

Compare to:

Sodium acetate carbon source

200 most important genes:

  gene name fitness t score description  
Atu1140 -8.9 -6.1 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1750 -7.7 -7.0 phosphoribosyl c-AMP cyclohydrolase compare
Atu1075 -7.0 -6.9 amidophosphoribosyltransferase compare
Atu1688 -6.7 -6.5 indole-3-glycerol-phosphate synthase compare
Atu1845 -6.7 -7.4 phosphoribosylformylglycinamidine synthase I compare
Atu3707 -6.6 -4.6 phosphoserine aminotransferase compare
Atu0679 -6.6 -7.8 ATP phosphoribosyltransferase compare
Atu2791 -6.4 -10.7 3-isopropylmalate dehydrogenase compare
Atu2264 -6.3 -17.4 2-isopropylmalate synthase compare
Atu0017 -6.2 -4.2 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2709 -6.1 -21.6 3-isopropylmalate dehydratase, large subunit compare
Atu1687 -6.1 -9.0 anthranilate phosphoribosyltransferase compare
Atu2289 -6.1 -22.2 anthranilate synthase component I and II compare
Atu0400 -6.0 -5.9 orotate phosphoribosyltransferase compare
Atu0099 -6.0 -15.4 prephenate dehydratase compare
Atu0537 -6.0 -7.1 histidinol dehydrogenase compare
Atu3483 -6.0 -7.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu0038 -5.9 -5.5 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2036 -5.8 -18.6 acetolactate synthase III, large subunit compare
Atu2718 -5.8 -12.3 homoserine O-succinyltransferase compare
Atu2040 -5.7 -8.7 phosphoserine phosphatase compare
Atu3754 -5.7 -9.4 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0039 -5.7 -3.9 imidazoleglycerol-phosphate synthase cyclase compare
Atu1205 -5.7 -16.8 threonine dehydratase compare
Atu1588 -5.7 -11.0 homoserine dehydrogenase compare
Atu1141 -5.6 -9.4 Phosphoribosylglycinamide synthetase compare
Atu0035 -5.6 -12.0 phosphoenolpyruvate carboxykinase compare
Atu4505 -5.6 -14.0 LacI family transcriptional regulator compare
Atu3482 -5.4 -9.8 pantoate--beta-alanine ligase compare
Atu0486 -5.4 -7.2 dihydroorotate dehydrogenase compare
Atu0432 -5.4 -11.7 O-succinylhomoserine sulfhydrylase compare
Atu3755 -5.4 -7.4 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1030 -5.3 -3.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3885 -5.3 -12.4 inositol monophosphatase compare
Atu0678 -5.2 -8.7 histidyl-tRNA synthetase compare
Atu0043 -5.2 -5.0 imidazoleglycerol-phosphate dehydratase compare
Atu1850 -5.1 -4.8 phosphoribosylformylglycinamidine synthetase II compare
Atu0803 -5.1 -24.3 pyruvate,orthophosphate dikinase compare
Atu0047 -5.1 -21.2 malate synthase G compare
Atu3731 -5.1 -9.5 5-formyltetrahydrofolate cyclo-ligase compare
Atu3740 -5.1 -13.7 fructose bisphosphate aldolase compare
Atu0041 -5.1 -3.5 glutamine amidotransferase compare
Atu2747 -5.0 -15.1 hypothetical protein compare
Atu2745 -5.0 -20.4 acetyl-coenzyme A synthetase compare
Atu3706 -5.0 -10.9 D-3-phosphoglycerate dehydrogenase compare
Atu1359 -5.0 -2.0 dnaK deletion suppressor protein compare
Atu0298 -5.0 -8.9 orotidine 5 compare
Atu0723 -4.9 -3.4 FAD dependent oxidoreductase compare
Atu2650 -4.8 -13.4 glycerol-3-phosphate dehydrogenase compare
Atu0421 -4.8 -2.7 ABC transporter, membrane spanning protein compare
Atu0536 -4.7 -12.2 hypothetical protein compare
Atu0608 -4.7 -18.9 transcriptional regulator compare
Atu1308 -4.7 -8.3 aspartate carbamoyl transferase catalytic subunit compare
Atu0647 -4.6 -8.3 phosphoribosylamine--glycine ligase compare
Atu2790 -4.6 -3.7 3-isopropylmalate dehydratase, small subunit compare
Atu0030 -4.6 -2.6 phosphocarrier protein HPr compare
Atu0607 -4.6 -21.7 isocitrate lyase compare
Atu0422 -4.4 -4.1 ABC transporter, membrane spanning protein compare
Atu1463 -4.4 -8.9 glycine cleavage system component H compare
Atu0602 -4.1 -14.6 glutamine synthetase compare
Atu1307 -4.1 -7.6 dihydroorotase compare
Atu1464 -4.1 -11.7 glycine cleavage system T protein, aminomethyltransferase compare
Atu0399 -4.1 -9.0 dihydroorotase compare
Atu1844 -4.1 -3.4 Phosphoribosylformylglycinamidine synthetase compare
Atu3739 -4.0 -4.7 phosphoglycerate kinase compare
Atu2115 -3.9 -15.5 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu1462 -3.8 -18.0 glycine cleavage system protein P2 compare
Atu0601 -3.8 -13.9 oxidoreductase compare
Atu3469 -3.8 -4.4 phosphoglyceromutase compare
Atu1589 -3.7 -7.8 aminotransferase, class I compare
Atu1620 -3.5 -16.0 triosephosphate isomerase compare
Atu2015 -3.3 -15.0 aminotransferase compare
Atu0040 -3.2 -2.5 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0659 -3.1 -6.2 NTP pyrophosphohydrolase, MutT family compare
Atu0664 -2.9 -11.3 transcriptional regulator, LysR family conserved
Atu1686 -2.8 -15.9 peptidyl-prolyl cis-trans isomerse D compare
Atu3763 -2.8 -3.2 hypothetical protein compare
Atu0999 -2.7 -9.7 magnesium transport protein compare
Atu4173 -2.6 -4.6 phosphoenolpyruvate-protein phosphotransferase compare
Atu2205 -2.4 -5.2 transcriptional regulator, MarR family compare
Atu2548 -2.4 -14.7 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu1021 -2.4 -3.9 outer membrane protein compare
Atu0484 -2.4 -8.0 two component response regulator conserved
Atu6114 -2.3 -2.9 hypothetical protein compare
Atu2640 -2.3 -5.9 hypothetical protein compare
Atu2684 -2.3 -2.8 hypothetical protein compare
Atu0346 -2.3 -6.9 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu2155 -2.3 -16.9 methionine synthase compare
Atu2125 -2.3 -1.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu2796 -2.3 -11.1 precorrin-4 C11-methyltransferase compare
Atu0606 -2.1 -3.6 hypothetical protein compare
Atu0501 -2.0 -12.3 acyl-CoA dehydrogenase compare
Atu1456 -2.0 -10.9 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu0527 -2.0 -14.4 two component sensor kinase/response regulator hybrid conserved
Atu4096 -1.9 -7.5 nicotinate-nucleotide pyrophosphorylase compare
Atu0590 -1.9 -8.8 transcriptional regulator repressor compare
Atu0029 -1.9 -7.4 S-adenosylhomocysteine hydrolase compare
Atu4098 -1.9 -11.8 quinolinate synthetase compare
Atu4346 -1.9 -9.8 hypothetical protein compare
Atu1446 -1.9 -3.3 two component response regulator compare
Atu0434 -1.9 -4.3 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu5045 -1.9 -1.6 hypothetical protein compare
Atu2798 -1.9 -6.9 precorrin-6y methyltransferase compare
Atu1891 -1.8 -5.8 cobalamin biosynthesis protein compare
Atu0502 -1.8 -7.9 acetyl-CoA acetyltransferase compare
Atu1454 -1.8 -6.3 siroheme synthase compare
Atu2803 -1.8 -4.8 Cobalamin biosynthesis associated protein compare
Atu2804 -1.7 -10.0 cobaltochelatase subunit compare
Atu2832 -1.7 -6.4 tRNA modification GTPase compare
Atu3783 -1.7 -11.1 glutamate synthase subunit beta compare
Atu0062 -1.7 -7.1 transcriptional regulator, ROK family compare
Atu2831 -1.6 -7.5 glucose inhibited division protein A compare
Atu2808 -1.6 -8.3 cobyric acid synthase compare
Atu2685 -1.6 -9.5 aconitate hydratase compare
Atu0503 -1.6 -12.8 enoyl-CoA hydratase compare
Atu0641 -1.6 -4.2 hypothetical protein compare
Atu3730 -1.6 -2.7 hypothetical protein compare
Atu0912 -1.6 -1.7 Na+/H+ antiporter compare
Atu2801 -1.6 -5.7 precorrin-2 C20 methyltransferase compare
Atu2807 -1.6 -8.1 cob(I)alamin adenosyltransferase compare
Atu3732 -1.6 -5.8 hemolysin compare
Atu2800 -1.6 -2.5 precorrin-3B C17-methyltransferase compare
Atu2793 -1.5 -5.9 cobyrinic acid a,c-diamide synthase compare
Atu1457 -1.5 -1.8 hypothetical protein compare
Atu2809 -1.5 -8.0 cobalamin biosynthesis protein compare
Atu3910 -1.5 -3.8 LamB/YcsF family protein compare
Atu4773 -1.5 -2.7 two component response regulator compare
Atu0184 -1.5 -3.3 glucokinase compare
Atu2569 -1.5 -10.3 thiamine biosynthesis protein compare
Atu2795 -1.5 -7.3 cobalamin biosynthetic protein compare
Atu4685 -1.5 -9.9 LacI family transcriptional regulator compare
Atu2802 -1.5 -7.9 precorrin-8X methylmutase compare
Atu0388 -1.5 -9.3 two component sensor kinase compare
Atu4317 -1.5 -3.6 TetR family transcriptional regulator compare
Atu0368 -1.4 -6.0 tRNA pseudouridine synthase I compare
Atu2726 -1.4 -11.9 pyruvate carboxylase compare
Atu3290 -1.4 -8.5 phosphomethylpyrimidine kinase compare
Atu3288 -1.4 -5.6 hydroxyethylthiazole kinase compare
Atu0354 -1.4 -3.3 ferric uptake regulator compare
Atu3784 -1.4 -11.2 glutamate synthase large subunit compare
Atu5430 -1.3 -1.2 hypothetical protein compare
Atu1748 -1.3 -7.5 NIFU-like protein compare
Atu1028 -1.3 -3.0 hypothetical protein compare
Atu4097 -1.3 -6.7 L-aspartate oxidase compare
Atu2805 -1.3 -5.5 cobalamin synthesis protein compare
Atu4711 -1.3 -4.6 two component sensor kinase compare
Atu2237 -1.3 -4.7 cytochrome c1 compare
Atu3794 -1.2 -8.2 FadR family transcriptional regulator compare
Atu2045 -1.2 -6.0 HFLK protein compare
Atu4635 -1.2 -5.8 hypothetical protein compare
Atu3289 -1.2 -2.0 thiamine-phosphate pyrophosphorylase compare
Atu2799 -1.2 -3.4 precorrin-6x reductase compare
Atu0876 -1.2 -1.8 superoxide dismutase compare
Atu2044 -1.2 -4.4 HFLC protein compare
Atu3486 -1.2 -2.4 DeoR family transcriptional regulator compare
Atu8115 -1.2 -3.0 Hypothetical Protein compare
Atu3791 -1.1 -7.0 L-asparaginase compare
Atu3598 -1.1 -1.6 thiol:disulfide interchange protein compare
Atu0977 -1.1 -4.0 serine protease DO-like protease compare
Atu4897 -1.1 -1.7 hypothetical protein compare
Atu4217 -1.1 -2.0 TetR family transcriptional regulator compare
Atu6189 -1.1 -0.6 protein secretion chaperone compare
Atu2554 -1.1 -2.8 lysyl-tRNA synthetase compare
Atu1542 -1.0 -3.5 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu1739 -1.0 -4.1 permease compare
Atu1242 -1.0 -6.4 cytochrome oxidase assembly factor compare
Atu1286 -1.0 -5.3 hypothetical protein compare
Atu1774 -1.0 -5.2 ABC transporter, substrate binding protein (peptide) compare
Atu2209 -1.0 -2.5 pyrroline-5-carboxylate reductase compare
Atu3908 -1.0 -6.8 GntR family transcriptional regulator compare
Atu5115 -1.0 -1.4 hypothetical protein compare
Atu2532 -1.0 -3.9 transcriptional regulator, MarR family compare
Atu1810 -1.0 -1.2 hypothetical protein compare
Atu2682 -1.0 -4.4 hypothetical protein compare
Atu3963 -1.0 -5.5 GntR family transcriptional regulator compare
Atu0768 -0.9 -6.6 cytochrome-c oxidase chain I compare
Atu1455 -0.9 -2.2 hypothetical protein compare
Atu0658 -0.9 -5.5 phosphate permease compare
Atu4530 -0.9 -4.9 TetR family transcriptional regulator compare
Atu1445 -0.9 -5.1 two component sensor kinase compare
Atu2376 -0.9 -0.6 hypothetical protein compare
Atu2200 -0.9 -2.3 cold shock protein compare
Atu1685 -0.9 -1.2 hypothetical protein compare
Atu5157 -0.9 -1.5 hypothetical protein compare
Atu5164 -0.9 -0.7 type IV secretion protein AvhB3 compare
Atu0101 -0.9 -3.2 cytochrome c compare
Atu0947 -0.9 -3.3 transcriptional regulator, AsnC family compare
Atu4674 -0.9 -4.7 GntR family transcriptional regulator compare
Atu1074 -0.8 -6.0 NAD/NADP dependent oxidoreductase compare
Atu0188 -0.8 -1.8 ABC transporter, membrane spanning protein (peptide) compare
Atu4541 -0.8 -2.6 carboxymuconolactone decarboxylase compare
Atu2020 -0.8 -1.4 transcriptional regulator, TetR family compare
Atu0190 -0.8 -4.3 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2207 -0.8 -2.2 two component sensor kinase compare
Atu2201 -0.8 -2.7 hydrolase compare
Atu1904 -0.8 -2.2 transcriptional regulator compare
Atu3998 -0.8 -5.8 8-amino-7-oxononanoate synthase compare
Atu3997 -0.8 -5.4 biotin synthetase compare
Atu1327 -0.8 -2.4 NADH-ubiquinone oxidoreductase compare
Atu0843 -0.8 -6.4 P type cation (metal) transporter, ATPase component compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Sodium acetate in Agrobacterium fabrum C58

For carbon source Sodium acetate across organisms