Experiment set1IT057 for Variovorax sp. OAS795

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a-Ketoglutaric acid disodium salt hydrate carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS23225 -5.9 -12.6 glutamate synthase-related protein compare
ABID97_RS05260 -4.6 -1.9 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS16595 -4.6 -5.9 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS11545 -4.2 -1.8 branched-chain amino acid ABC transporter permease compare
ABID97_RS05250 -4.1 -5.6 anthranilate synthase component I compare
ABID97_RS27720 -3.9 -2.7 fumarate reductase/succinate dehydrogenase flavoprotein subunit compare
ABID97_RS16600 -3.9 -9.9 CysB family HTH-type transcriptional regulator compare
ABID97_RS06575 -3.7 -8.3 trehalose-phosphatase compare
ABID97_RS09180 -3.6 -4.3 DNA polymerase I compare
ABID97_RS13990 -3.6 -2.5 amino acid aminotransferase compare
ABID97_RS08425 -3.6 -4.9 tryptophan synthase subunit alpha compare
ABID97_RS15375 -3.5 -6.0 DUF934 domain-containing protein compare
ABID97_RS25015 -3.4 -3.3 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS15380 -3.4 -11.5 nitrite/sulfite reductase compare
ABID97_RS02600 -3.4 -2.3 homoserine O-acetyltransferase compare
ABID97_RS23915 -3.3 -3.9 heme o synthase compare
ABID97_RS23220 -3.3 -1.7 glutamate synthase subunit beta compare
ABID97_RS13860 -3.2 -8.3 hypothetical protein compare
ABID97_RS07405 -3.0 -13.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS06345 -3.0 -3.6 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS05275 -3.0 -2.1 anthranilate phosphoribosyltransferase compare
ABID97_RS23425 -3.0 -2.8 tRNA-Pro compare
ABID97_RS01565 -3.0 -11.7 DNA starvation/stationary phase protection protein compare
ABID97_RS20615 -2.9 -6.7 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS15370 -2.9 -9.9 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS15360 -2.9 -6.7 GTP-binding protein compare
ABID97_RS03805 -2.8 -1.6 ATP-binding protein compare
ABID97_RS16535 -2.7 -8.8 arginine/lysine/ornithine decarboxylase compare
ABID97_RS15365 -2.7 -6.1 sulfate adenylyltransferase subunit CysD compare
ABID97_RS23230 -2.7 -11.0 transposase compare
ABID97_RS10885 -2.7 -6.5 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS26490 -2.5 -1.5 aspartate/glutamate racemase family protein compare
ABID97_RS02510 -2.5 -17.1 NADP-dependent malic enzyme compare
ABID97_RS14160 -2.4 -7.1 cell division protein ZapE compare
ABID97_RS23455 -2.4 -3.3 hypothetical protein compare
ABID97_RS12180 -2.4 -2.3 hypothetical protein compare
ABID97_RS21150 -2.4 -12.0 FAD-dependent oxidoreductase compare
ABID97_RS05280 -2.4 -1.6 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS08435 -2.3 -1.6 phosphoribosylanthranilate isomerase compare
ABID97_RS05755 -2.3 -2.2 glycosyltransferase compare
ABID97_RS12465 -2.2 -7.6 dicarboxylate/amino acid:cation symporter compare
ABID97_RS17590 -2.1 -10.3 endopeptidase La compare
ABID97_RS17850 -2.1 -1.1 tetratricopeptide repeat protein compare
ABID97_RS24170 -2.1 -5.8 ATP-binding protein compare
ABID97_RS24045 -2.1 -3.5 type II toxin-antitoxin system prevent-host-death family antitoxin compare
ABID97_RS14090 -2.1 -1.7 response regulator transcription factor compare
ABID97_RS23450 -2.1 -4.5 MBOAT family protein compare
ABID97_RS06450 -2.0 -1.9 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS17970 -2.0 -6.2 protein TolQ compare
ABID97_RS17895 -2.0 -8.2 transcriptional regulator NrdR compare
ABID97_RS20520 -2.0 -2.3 polyribonucleotide nucleotidyltransferase compare
ABID97_RS26160 -2.0 -1.4 nuclear transport factor 2 family protein compare
ABID97_RS15665 -2.0 -7.4 [protein-PII] uridylyltransferase compare
ABID97_RS03910 -1.9 -1.8 orotate phosphoribosyltransferase compare
ABID97_RS27635 -1.9 -1.1 NAD(P)H-dependent oxidoreductase compare
ABID97_RS22860 -1.9 -2.6 MurR/RpiR family transcriptional regulator compare
ABID97_RS13570 -1.8 -4.6 IclR family transcriptional regulator compare
ABID97_RS25525 -1.8 -4.3 LacI family DNA-binding transcriptional regulator compare
ABID97_RS16690 -1.8 -4.5 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS03680 -1.8 -4.9 lysophospholipid transporter LplT compare
ABID97_RS19065 -1.8 -5.4 GntR family transcriptional regulator compare
ABID97_RS24920 -1.8 -1.6 Holliday junction branch migration protein RuvA compare
ABID97_RS03800 -1.7 -2.3 O-antigen ligase family protein compare
ABID97_RS16695 -1.7 -9.9 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS04500 -1.7 -1.6 HPr(Ser) kinase/phosphatase compare
ABID97_RS24500 -1.7 -6.5 oxalyl-CoA decarboxylase compare
ABID97_RS06460 -1.7 -1.6 sigma 54-interacting transcriptional regulator compare
ABID97_RS09800 -1.6 -1.2 hypothetical protein compare
ABID97_RS14985 -1.6 -1.6 hypothetical protein compare
ABID97_RS07430 -1.6 -7.3 pantoate--beta-alanine ligase compare
ABID97_RS03110 -1.6 -6.8 helix-turn-helix transcriptional regulator compare
ABID97_RS00255 -1.6 -9.5 type IV pilus twitching motility protein PilT compare
ABID97_RS05765 -1.6 -2.4 UDP-glucose 4-epimerase GalE compare
ABID97_RS08430 -1.6 -1.1 tryptophan synthase subunit beta compare
ABID97_RS17600 -1.5 -2.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABID97_RS14095 -1.5 -8.2 PAS domain S-box protein compare
ABID97_RS13450 -1.5 -2.3 TetR/AcrR family transcriptional regulator compare
ABID97_RS08220 -1.5 -7.8 phosphoenolpyruvate carboxylase compare
ABID97_RS09595 -1.5 -1.9 Arc family DNA-binding protein compare
ABID97_RS02135 -1.5 -5.4 GspH/FimT family pseudopilin compare
ABID97_RS02110 -1.5 -10.5 type IV pilus modification protein PilV compare
ABID97_RS05365 -1.5 -3.5 DUF4390 domain-containing protein compare
ABID97_RS23940 -1.5 -6.6 cytochrome c oxidase subunit 3 compare
ABID97_RS25900 -1.4 -2.0 ABC transporter permease compare
ABID97_RS09175 -1.4 -1.3 hypothetical protein compare
ABID97_RS02115 -1.4 -7.7 PilW family protein compare
ABID97_RS07435 -1.4 -4.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS02855 -1.4 -8.0 sensor histidine kinase N-terminal domain-containing protein compare
ABID97_RS13750 -1.4 -1.1 hypothetical protein compare
ABID97_RS23430 -1.4 -9.3 type IV-A pilus assembly ATPase PilB compare
ABID97_RS01650 -1.4 -0.9 orotidine-5'-phosphate decarboxylase compare
ABID97_RS07000 -1.4 -7.0 threonine ammonia-lyase, biosynthetic compare
ABID97_RS24705 -1.3 -6.1 response regulator compare
ABID97_RS23435 -1.3 -9.0 type II secretion system F family protein compare
ABID97_RS02125 -1.3 -11.2 PilC/PilY family type IV pilus protein compare
ABID97_RS13155 -1.3 -2.3 MarR family winged helix-turn-helix transcriptional regulator compare
ABID97_RS17265 -1.3 -1.7 two-component system response regulator OmpR compare
ABID97_RS20095 -1.3 -1.7 DNA topoisomerase IV subunit B compare
ABID97_RS06520 -1.3 -1.2 SAM-dependent methyltransferase compare
ABID97_RS02460 -1.3 -9.0 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS02120 -1.3 -7.1 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS23485 -1.3 -1.8 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABID97_RS13865 -1.3 -3.4 hypothetical protein compare
ABID97_RS02130 -1.3 -7.4 type IV pilin protein compare
ABID97_RS23440 -1.2 -7.6 A24 family peptidase compare
ABID97_RS17635 -1.2 -3.2 presqualene diphosphate synthase HpnD compare
ABID97_RS19930 -1.2 -1.3 DUF2160 domain-containing protein compare
ABID97_RS14625 -1.2 -4.7 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS07775 -1.2 -3.8 phosphoribosylglycinamide formyltransferase compare
ABID97_RS10250 -1.2 -2.3 Rieske 2Fe-2S domain-containing protein compare
ABID97_RS20370 -1.2 -5.2 branched-chain amino acid ABC transporter permease compare
ABID97_RS01840 -1.2 -8.5 DUF1631 family protein compare
ABID97_RS13245 -1.2 -1.1 XRE family transcriptional regulator compare
ABID97_RS23950 -1.2 -6.2 cytochrome c oxidase assembly protein compare
ABID97_RS02850 -1.2 -4.9 response regulator transcription factor compare
ABID97_RS02140 -1.2 -6.3 sugar transferase compare
ABID97_RS11640 -1.2 -6.5 TetR family transcriptional regulator compare
ABID97_RS16580 -1.1 -1.7 leucyl aminopeptidase compare
ABID97_RS03125 -1.1 -5.4 benzoyl-CoA 2,3-epoxidase subunit BoxA compare
ABID97_RS02145 -1.1 -4.3 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS16050 -1.1 -1.3 isochorismatase family cysteine hydrolase compare
ABID97_RS17270 -1.1 -4.4 ATP-binding protein compare
ABID97_RS25100 -1.1 -6.0 hydroxymethylglutaryl-CoA lyase compare
ABID97_RS06190 -1.1 -5.0 division/cell wall cluster transcriptional repressor MraZ compare
ABID97_RS06180 -1.1 -2.6 ATP-dependent protease subunit HslV compare
ABID97_RS01755 -1.1 -6.4 pyruvate kinase compare
ABID97_RS15830 -1.1 -1.7 fumarylacetoacetate hydrolase family protein compare
ABID97_RS08445 -1.1 -5.3 FimV/HubP family polar landmark protein compare
ABID97_RS08775 -1.1 -1.1 ribosome small subunit-dependent GTPase A compare
ABID97_RS10085 -1.1 -1.4 M20 family metallopeptidase compare
ABID97_RS18205 -1.1 -3.1 XRE family transcriptional regulator compare
ABID97_RS29030 -1.1 -1.3 3-isopropylmalate dehydratase small subunit compare
ABID97_RS05235 -1.1 -0.8 PA2169 family four-helix-bundle protein compare
ABID97_RS03915 -1.0 -4.9 DUF4124 domain-containing protein compare
ABID97_RS28395 -1.0 -1.4 LysR substrate-binding domain-containing protein compare
ABID97_RS23965 -1.0 -5.9 cytochrome c oxidase subunit II compare
ABID97_RS04855 -1.0 -2.2 CinA family protein compare
ABID97_RS12575 -1.0 -1.3 ATP-grasp domain-containing protein compare
ABID97_RS02985 -1.0 -3.7 TetR family transcriptional regulator C-terminal domain-containing protein compare
ABID97_RS08480 -1.0 -1.1 citrate synthase compare
ABID97_RS17225 -1.0 -5.5 polyhydroxyalkanoate synthesis repressor PhaR compare
ABID97_RS20905 -1.0 -1.3 hypothetical protein compare
ABID97_RS10295 -1.0 -1.3 winged helix-turn-helix transcriptional regulator compare
ABID97_RS22705 -1.0 -4.5 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS18770 -1.0 -2.2 FAD-dependent oxidoreductase compare
ABID97_RS29140 -1.0 -2.1 MarR family transcriptional regulator compare
ABID97_RS12110 -1.0 -1.0 phosphoribosyltransferase family protein compare
ABID97_RS19630 -1.0 -0.8 TRAP transporter small permease compare
ABID97_RS05750 -1.0 -1.6 glycosyltransferase compare
ABID97_RS23650 -1.0 -7.5 serine/threonine-protein kinase compare
ABID97_RS28810 -1.0 -1.5 LysR substrate-binding domain-containing protein compare
ABID97_RS11865 -1.0 -2.7 beta-xylosidase compare
ABID97_RS20035 -0.9 -2.4 glutamine ABC transporter ATP-binding protein compare
ABID97_RS18495 -0.9 -1.0 DUF2889 domain-containing protein compare
ABID97_RS17200 -0.9 -7.3 ribonuclease R compare
ABID97_RS22760 -0.9 -2.3 TetR/AcrR family transcriptional regulator compare
ABID97_RS25125 -0.9 -4.2 enoyl-CoA hydratase/isomerase family protein compare
ABID97_RS02420 -0.9 -4.0 protealysin inhibitor emfourin compare
ABID97_RS03720 -0.9 -0.7 4-hydroxy-2-oxoheptanedioate aldolase compare
ABID97_RS22785 -0.9 -1.1 1,2-phenylacetyl-CoA epoxidase subunit PaaA compare
ABID97_RS01825 -0.9 -6.8 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS11170 -0.9 -3.2 GntR family transcriptional regulator compare
ABID97_RS06175 -0.9 -6.3 STAS domain-containing protein compare
ABID97_RS03140 -0.9 -1.0 tRNA-Gly compare
ABID97_RS19375 -0.9 -3.0 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
ABID97_RS26670 -0.9 -1.1 DUF1801 domain-containing protein compare
ABID97_RS16910 -0.9 -5.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABID97_RS09935 -0.9 -4.9 hypothetical protein compare
ABID97_RS23380 -0.9 -5.8 lytic transglycosylase domain-containing protein compare
ABID97_RS20380 -0.9 -4.2 ABC transporter ATP-binding protein compare
ABID97_RS23960 -0.9 -5.9 cytochrome c oxidase subunit I compare
ABID97_RS24055 -0.9 -1.3 TetR/AcrR family transcriptional regulator compare
ABID97_RS19695 -0.9 -1.1 alpha/beta fold hydrolase compare
ABID97_RS27780 -0.8 -1.1 efflux RND transporter periplasmic adaptor subunit compare
ABID97_RS15575 -0.8 -2.3 sulfate ABC transporter permease subunit CysT compare
ABID97_RS14700 -0.8 -2.0 recombination mediator RecR compare
ABID97_RS28635 -0.8 -3.4 IclR family transcriptional regulator compare
ABID97_RS22285 -0.8 -2.0 GntR family transcriptional regulator compare
ABID97_RS14115 -0.8 -3.1 dihydrolipoyl dehydrogenase compare
ABID97_RS25510 -0.8 -1.4 ABC transporter ATP-binding protein compare
ABID97_RS15465 -0.8 -5.1 sulfate ABC transporter substrate-binding protein compare
ABID97_RS23330 -0.8 -4.1 c-type cytochrome compare
ABID97_RS12020 -0.8 -0.9 polysaccharide pyruvyl transferase family protein compare
ABID97_RS06900 -0.8 -3.3 cyanophycin synthetase compare
ABID97_RS01590 -0.8 -3.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
ABID97_RS25595 -0.8 -1.0 FAD:protein FMN transferase compare
ABID97_RS08710 -0.8 -3.7 polynucleotide adenylyltransferase PcnB compare
ABID97_RS08880 -0.8 -2.7 ABC transporter substrate-binding protein compare
ABID97_RS15855 -0.8 -0.9 methylated-DNA--[protein]-cysteine S-methyltransferase compare
ABID97_RS22060 -0.8 -0.7 MFS transporter compare
ABID97_RS01645 -0.8 -5.0 helix-turn-helix transcriptional regulator compare
ABID97_RS14260 -0.8 -3.3 FtsH protease activity modulator HflK compare
ABID97_RS07260 -0.8 -3.8 TIM44-like domain-containing protein compare
ABID97_RS06160 -0.8 -3.5 GTP-binding protein compare
ABID97_RS06315 -0.8 -5.1 YqiA/YcfP family alpha/beta fold hydrolase compare
ABID97_RS15580 -0.8 -3.4 sulfate ABC transporter permease subunit CysW compare
ABID97_RS25405 -0.8 -4.6 16S ribosomal RNA compare
ABID97_RS23655 -0.8 -3.3 YicC/YloC family endoribonuclease compare
ABID97_RS06415 -0.8 -5.9 sigma-54 dependent transcriptional regulator compare
ABID97_RS08250 -0.8 -4.0 RluA family pseudouridine synthase compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source a-Ketoglutaric acid disodium salt hydrate in Variovorax sp. OAS795

For carbon source a-Ketoglutaric acid disodium salt hydrate across organisms