Experiment set1IT057 for Pseudomonas sp. RS175

Compare to:

Cytidine carbon 10 mM

200 most important genes:

  gene name fitness t score description  
PFR28_04071 -5.3 -2.1 Multifunctional CCA protein compare
PFR28_03860 -4.7 -7.1 putative murein peptide carboxypeptidase compare
PFR28_04933 -4.3 -4.3 Imidazole glycerol phosphate synthase subunit HisF compare
PFR28_00926 -4.2 -2.9 hypothetical protein compare
PFR28_04929 -3.9 -7.2 Histidine biosynthesis bifunctional protein HisB compare
PFR28_00928 -3.8 -4.4 putative sugar transferase EpsL compare
PFR28_04308 -3.8 -4.5 Amino-acid acetyltransferase compare
PFR28_04932 -3.7 -6.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PFR28_02821 -3.4 -18.3 3-isopropylmalate dehydrogenase compare
PFR28_05015 -3.3 -21.6 Glutamate synthase [NADPH] large chain compare
PFR28_03697 -3.3 -15.3 Ketol-acid reductoisomerase (NADP(+)) compare
PFR28_04278 -3.2 -11.5 Dihydroxy-acid dehydratase compare
PFR28_05016 -3.1 -13.8 Glutamate synthase [NADPH] small chain compare
PFR28_02824 -3.0 -6.3 3-isopropylmalate dehydratase large subunit compare
PFR28_02734 -3.0 -5.2 Ribose operon repressor compare
PFR28_00573 -2.9 -11.7 Glucose-6-phosphate 1-dehydrogenase compare
PFR28_04930 -2.8 -8.9 Imidazole glycerol phosphate synthase subunit HisH compare
PFR28_03699 -2.8 -9.9 Acetolactate synthase isozyme 3 large subunit compare
PFR28_03724 -2.8 -9.0 Glucose-6-phosphate isomerase compare
PFR28_03714 -2.8 -13.0 RNA polymerase-binding transcription factor DksA compare
PFR28_02735 -2.7 -7.5 Ribose import permease protein RbsC compare
PFR28_03217 -2.7 -4.0 Phosphoribosylformylglycinamidine cyclo-ligase compare
PFR28_01365 -2.6 -6.8 hypothetical protein compare
PFR28_00187 -2.5 -12.2 Histidinol dehydrogenase compare
PFR28_02733 -2.5 -5.8 Ribokinase compare
PFR28_02736 -2.5 -8.5 Arabinose import ATP-binding protein AraG compare
PFR28_02737 -2.5 -6.5 Ribose import binding protein RbsB compare
PFR28_02811 -2.5 -8.0 Amidophosphoribosyltransferase compare
PFR28_00305 -2.5 -9.6 2-isopropylmalate synthase compare
PFR28_02983 -2.4 -8.0 HTH-type transcriptional regulator XynR compare
PFR28_03420 -2.4 -6.6 hypothetical protein compare
PFR28_04345 -2.3 -14.3 Polyphosphate kinase compare
PFR28_00186 -2.3 -6.2 ATP phosphoribosyltransferase compare
PFR28_03718 -2.2 -5.9 Transcriptional regulatory protein ZraR compare
PFR28_04245 -2.2 -11.5 Homoserine O-succinyltransferase compare
PFR28_03598 -2.2 -9.4 Penicillin-binding protein activator LpoA compare
PFR28_02613 -2.2 -11.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
PFR28_03883 -2.1 -7.7 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase compare
PFR28_01366 -2.0 -7.3 Sulfite reductase [ferredoxin] compare
PFR28_01142 -1.9 -11.3 Transaldolase compare
PFR28_04246 -1.9 -8.1 Bifunctional methionine biosynthesis protein MetXA/MetW compare
PFR28_04064 -1.9 -3.7 Ribosomal RNA small subunit methyltransferase A compare
PFR28_04842 -1.9 -4.6 D-3-phosphoglycerate dehydrogenase compare
PFR28_01319 -1.9 -9.8 1,4-alpha-glucan branching enzyme GlgB compare
PFR28_01809 -1.8 -1.4 hypothetical protein compare
PFR28_00918 -1.8 -8.2 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
PFR28_04059 -1.8 -9.9 N-acetylmuramate alpha-1-phosphate uridylyltransferase compare
PFR28_02823 -1.8 -1.8 3-isopropylmalate dehydratase small subunit 1 compare
PFR28_05125 -1.8 -8.7 ATP phosphoribosyltransferase regulatory subunit compare
PFR28_04986 -1.8 -4.7 Phosphoribosyl-AMP cyclohydrolase compare
PFR28_02810 -1.8 -10.3 O-succinylhomoserine sulfhydrylase compare
PFR28_01553 -1.7 -6.0 hypothetical protein compare
PFR28_00695 -1.7 -1.9 Sulfur carrier protein TusA compare
PFR28_00927 -1.7 -9.6 D-inositol-3-phosphate glycosyltransferase compare
PFR28_01315 -1.7 -3.0 hypothetical protein compare
PFR28_04202 -1.7 -5.8 5,10-methylenetetrahydrofolate reductase compare
PFR28_00855 -1.7 -7.1 hypothetical protein compare
PFR28_04834 -1.7 -10.7 L-threonine dehydratase biosynthetic IlvA compare
PFR28_00561 -1.7 -3.2 Phosphogluconate dehydratase compare
PFR28_03151 -1.6 -3.0 Septum site-determining protein MinC compare
PFR28_05105 -1.6 -6.6 Phosphoserine phosphatase SerB2 compare
PFR28_03413 -1.6 -4.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PFR28_04089 -1.6 -1.3 PqqA binding protein compare
PFR28_03698 -1.6 -6.3 Acetolactate synthase isozyme 3 small subunit compare
PFR28_03255 -1.6 -9.8 Chemotaxis protein methyltransferase Cher2 compare
PFR28_00861 -1.5 -9.1 Chemotaxis protein CheW compare
PFR28_03304 -1.5 -1.5 hypothetical protein compare
PFR28_00851 -1.5 -2.0 Flagellum site-determining protein YlxH compare
PFR28_02603 -1.5 -5.2 Siroheme synthase compare
PFR28_01930 -1.5 -3.7 HTH-type transcriptional regulator McbR compare
PFR28_00730 -1.5 -3.3 5-oxoprolinase subunit C compare
PFR28_00930 -1.5 -5.3 GDP-perosamine synthase compare
PFR28_03666 -1.4 -2.2 hypothetical protein compare
PFR28_04485 -1.4 -3.4 Phosphate-specific transport system accessory protein PhoU compare
PFR28_05006 -1.4 -12.0 Penicillin-binding protein 1A compare
PFR28_00403 -1.4 -4.5 Regulator of sigma-E protease RseP compare
PFR28_00853 -1.4 -6.5 Chemotaxis protein CheY compare
PFR28_05139 -1.4 -2.2 hypothetical protein compare
PFR28_01003 -1.4 -4.3 hypothetical protein compare
PFR28_04262 -1.4 -5.4 Ribosomal RNA small subunit methyltransferase D compare
PFR28_00572 -1.4 -6.7 HTH-type transcriptional regulator HexR compare
PFR28_00729 -1.4 -7.8 5-oxoprolinase subunit B compare
PFR28_03223 -1.3 -8.9 GTP pyrophosphokinase compare
PFR28_04423 -1.3 -2.4 DNA-directed RNA polymerase subunit omega compare
PFR28_04782 -1.3 -7.9 hypothetical protein compare
PFR28_01794 -1.2 -2.5 putative tautomerase compare
PFR28_03417 -1.2 -1.6 hypothetical protein compare
PFR28_01317 -1.2 -8.6 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase 2 compare
PFR28_00873 -1.2 -4.5 hypothetical protein compare
PFR28_03412 -1.2 -3.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PFR28_00089 -1.2 -1.6 Transcription termination/antitermination protein NusA compare
PFR28_02727 -1.2 -2.3 Cold shock protein CapB compare
PFR28_04378 -1.2 -3.0 Tyrosine recombinase XerC compare
PFR28_03596 -1.1 -2.1 Transcriptional regulator MraZ compare
PFR28_00356 -1.1 -3.7 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
PFR28_02009 -1.1 -1.1 HTH-type transcriptional regulator PgrR compare
PFR28_01836 -1.1 -2.0 Transcriptional regulator SlyA compare
PFR28_00728 -1.1 -5.2 5-oxoprolinase subunit A 3 compare
PFR28_03232 -1.1 -3.0 putative protein YfgD compare
PFR28_01561 -1.1 -2.2 hypothetical protein compare
PFR28_03951 -1.1 -1.0 hypothetical protein compare
PFR28_05036 -1.1 -1.0 Acyl carrier protein compare
PFR28_00169 -1.1 -3.3 Phosphocarrier protein NPr compare
PFR28_05205 -1.0 -3.1 Precorrin-8X methylmutase compare
PFR28_03635 -1.0 -3.1 Malate:quinone oxidoreductase compare
PFR28_00425 -1.0 -7.7 Protein-L-isoaspartate O-methyltransferase compare
PFR28_01118 -1.0 -2.8 hypothetical protein compare
PFR28_00476 -1.0 -2.0 hypothetical protein compare
PFR28_04830 -1.0 -6.3 Phosphoenolpyruvate-dependent phosphotransferase system compare
PFR28_01060 -1.0 -3.6 HTH-type transcriptional repressor NanR compare
PFR28_02688 -0.9 -1.5 hypothetical protein compare
PFR28_04473 -0.9 -1.1 DNA-binding protein HU-beta compare
PFR28_01043 -0.9 -2.9 hypothetical protein compare
PFR28_00860 -0.9 -3.9 hypothetical protein compare
PFR28_02718 -0.9 -3.8 hypothetical protein compare
PFR28_03202 -0.9 -2.1 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFR28_04639 -0.9 -5.5 hypothetical protein compare
PFR28_03130 -0.9 -1.7 Streptothricin hydrolase compare
PFR28_04585 -0.9 -4.0 Chromosome partitioning protein ParA compare
PFR28_00541 -0.9 -1.9 hypothetical protein compare
PFR28_01917 -0.9 -1.7 Glutamine transport ATP-binding protein GlnQ compare
PFR28_03954 -0.9 -1.4 hypothetical protein compare
PFR28_01435 -0.8 -1.7 Response regulator UvrY compare
PFR28_04663 -0.8 -4.7 Ribosomal RNA small subunit methyltransferase B compare
PFR28_01881 -0.8 -2.0 putative oxidoreductase compare
PFR28_01080 -0.8 -4.8 Oxygen-independent coproporphyrinogen III oxidase compare
PFR28_00100 -0.8 -3.3 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
PFR28_05144 -0.8 -1.9 hypothetical protein compare
PFR28_03266 -0.8 -1.9 hypothetical protein compare
PFR28_00837 -0.8 -2.6 hypothetical protein compare
PFR28_00304 -0.8 -1.5 hypothetical protein compare
PFR28_00945 -0.8 -1.7 hypothetical protein compare
PFR28_00563 -0.8 -1.8 Transcriptional regulatory protein OmpR compare
PFR28_00838 -0.8 -5.7 Sensor histidine kinase RcsC compare
PFR28_02715 -0.8 -2.2 hypothetical protein compare
PFR28_01661 -0.8 -0.9 Delta(1)-pyrroline-2-carboxylate/Delta(1)- piperideine-2-carboxylate reductase compare
PFR28_00932 -0.8 -6.8 UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase compare
PFR28_01156 -0.7 -3.4 hypothetical protein compare
PFR28_00158 -0.7 -3.6 Ribonuclease G compare
PFR28_00916 -0.7 -5.2 UDP-N-acetylglucosamine 2-epimerase compare
PFR28_01593 -0.7 -2.7 hypothetical protein compare
PFR28_05078 -0.7 -1.2 hypothetical protein compare
PFR28_00547 -0.7 -1.4 hypothetical protein compare
PFR28_04518 -0.7 -4.6 2-oxoglutarate carboxylase small subunit compare
PFR28_01969 -0.7 -1.6 hypothetical protein compare
PFR28_00709 -0.7 -2.1 hypothetical protein compare
PFR28_01362 -0.7 -1.1 hypothetical protein compare
PFR28_03483 -0.7 -5.6 hypothetical protein compare
PFR28_05079 -0.7 -5.0 hypothetical protein compare
PFR28_04144 -0.7 -2.4 hypothetical protein compare
PFR28_04931 -0.7 -2.5 hypothetical protein compare
PFR28_02510 -0.7 -1.0 Chemotaxis protein CheY compare
PFR28_02367 -0.7 -1.9 Cysteine/O-acetylserine efflux protein compare
PFR28_00856 -0.7 -3.3 Protein-glutamate methylesterase/protein-glutamine glutaminase 1 compare
PFR28_00336 -0.7 -1.5 hypothetical protein compare
PFR28_02514 -0.7 -2.2 Chemotaxis protein CheW compare
PFR28_01251 -0.7 -1.4 ECF RNA polymerase sigma factor EcfG compare
PFR28_02663 -0.7 -1.5 hypothetical protein compare
PFR28_01408 -0.7 -1.7 hypothetical protein compare
PFR28_03169 -0.7 -4.2 Tail-specific protease compare
PFR28_03959 -0.7 -4.2 Outer membrane protein W compare
PFR28_02201 -0.7 -0.6 Chaperone SurA compare
PFR28_02232 -0.7 -0.7 hypothetical protein compare
PFR28_02678 -0.6 -1.6 hypothetical protein compare
PFR28_03612 -0.6 -2.2 Cell division protein ZapE compare
PFR28_01978 -0.6 -2.2 hypothetical protein compare
PFR28_00917 -0.6 -4.3 UDP-N-acetyl-D-mannosamine dehydrogenase compare
PFR28_04737 -0.6 -4.2 Protein YdgA compare
PFR28_00056 -0.6 -2.2 hypothetical protein compare
PFR28_01455 -0.6 -2.1 Na(+), Li(+), K(+)/H(+) antiporter compare
PFR28_03281 -0.6 -2.6 Arginine N-succinyltransferase subunit beta compare
PFR28_04921 -0.6 -1.1 hypothetical protein compare
PFR28_01326 -0.6 -1.1 HTH-type transcriptional regulator GltC compare
PFR28_03485 -0.6 -3.0 Cytochrome c551 peroxidase compare
PFR28_03822 -0.6 -1.0 Acetyltransferase compare
PFR28_00764 -0.6 -1.6 hypothetical protein compare
PFR28_05173 -0.6 -1.9 hypothetical protein compare
PFR28_01110 -0.6 -2.1 Fatty acid oxidation complex subunit alpha compare
PFR28_03059 -0.6 -2.2 hypothetical protein compare
PFR28_03482 -0.6 -3.9 Sensor histidine kinase RcsC compare
PFR28_02975 -0.6 -1.2 hypothetical protein compare
PFR28_00182 -0.6 -3.4 Intermembrane phospholipid transport system binding protein MlaC compare
PFR28_03282 -0.6 -3.2 Arginine N-succinyltransferase subunit alpha compare
PFR28_00294 -0.6 -2.0 Dual-specificity RNA methyltransferase RlmN compare
PFR28_00933 -0.6 -1.9 hypothetical protein compare
PFR28_02205 -0.6 -1.4 hypothetical protein compare
PFR28_04377 -0.6 -2.3 hypothetical protein compare
PFR28_04359 -0.6 -2.5 hypothetical protein compare
PFR28_04145 -0.6 -3.0 Protein FixB compare
PFR28_03178 -0.6 -1.3 tRNA-Asp compare
PFR28_00913 -0.6 -2.8 Integration host factor subunit beta compare
PFR28_00535 -0.6 -1.5 hypothetical protein compare
PFR28_01094 -0.6 -2.4 hypothetical protein compare
PFR28_01095 -0.6 -2.5 Cbb3-type cytochrome c oxidase subunit CcoN1 compare
PFR28_03324 -0.6 -1.5 hypothetical protein compare
PFR28_04229 -0.6 -2.8 hypothetical protein compare
PFR28_00980 -0.6 -1.0 ATP-dependent RNA helicase DeaD compare
PFR28_00799 -0.6 -2.0 Putative NAD(P)H nitroreductase YdjA compare
PFR28_03487 -0.6 -3.3 Adaptive-response sensory-kinase SasA compare
PFR28_03578 -0.6 -1.0 Transcriptional activator protein CzcR compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Cytidine in Pseudomonas sp. RS175

For carbon source Cytidine across organisms