Experiment set1IT057 for Enterobacter asburiae PDN3

Compare to:

M9 with casamino acids and trichloroethylene 76.3 uM

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_4153 -5.1 -3.5 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_3285 -4.7 -8.0 malate dehydrogenase (NAD) (EC 1.1.1.37) compare
EX28DRAFT_0046 -4.4 -3.0 shikimate dehydrogenase compare
EX28DRAFT_2265 -4.4 -1.9 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_2270 -4.0 -1.3 succinate dehydrogenase subunit C (EC 1.3.5.1) compare
EX28DRAFT_1841 -4.0 -1.2 Predicted metal-binding, possibly nucleic acid-binding protein compare
EX28DRAFT_4271 -3.8 -1.2 glycerol-3-phosphate acyltransferase (EC 2.3.1.15) compare
EX28DRAFT_2252 -3.7 -2.6 TolA protein compare
EX28DRAFT_4156 -3.5 -2.6 ribulose-phosphate 3-epimerase compare
EX28DRAFT_3419 -3.4 -11.6 Fructose-1,6-bisphosphatase compare
EX28DRAFT_0933 -3.3 -11.1 tryptophan synthase, beta subunit compare
EX28DRAFT_0935 -3.2 -8.6 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
EX28DRAFT_4544 -3.2 -2.2 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_0934 -3.1 -11.9 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_0932 -3.0 -6.1 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
EX28DRAFT_0936 -2.9 -5.3 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_0494 -2.9 -3.5 Protein-tyrosine-phosphatase compare
EX28DRAFT_2531 -2.8 -4.2 endopeptidase La compare
EX28DRAFT_2269 -2.8 -9.7 succinate dehydrogenase, hydrophobic membrane anchor protein compare
EX28DRAFT_2258 -2.7 -1.8 cytochrome d oxidase, subunit II (cydB) compare
EX28DRAFT_1706 -2.6 -8.6 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
EX28DRAFT_3336 -2.6 -10.5 aspartate ammonia-lyase compare
EX28DRAFT_2046 -2.6 -2.3 thiol reductant ABC exporter, CydC subunit compare
EX28DRAFT_2027 -2.5 -3.4 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_2267 -2.5 -4.9 succinate dehydrogenase and fumarate reductase iron-sulfur protein compare
EX28DRAFT_3710 -2.4 -4.7 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_4350 -2.4 -1.3 nitrogen regulation protein NR(I) compare
EX28DRAFT_2264 -2.4 -7.2 succinyl-CoA synthetase, beta subunit compare
EX28DRAFT_0167 -2.3 -2.1 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
EX28DRAFT_0284 -2.2 -6.9 Phosphoglycerate dehydrogenase and related dehydrogenases compare
EX28DRAFT_3647 -2.1 -5.0 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_3711 -2.0 -1.5 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_2425 -2.0 -1.5 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3646 -2.0 -5.9 4-hydroxythreonine-4-phosphate dehydrogenase compare
EX28DRAFT_0292 -2.0 -3.2 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_1740 -1.9 -1.1 Phosphotransferase system cellobiose-specific component IIA compare
EX28DRAFT_2348 -1.9 -1.1 Universal stress protein UspA and related nucleotide-binding proteins compare
EX28DRAFT_2268 -1.9 -5.8 succinate dehydrogenase subunit A (EC 1.3.5.1) compare
EX28DRAFT_0331 -1.9 -3.7 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_0068 -1.9 -1.3 autonomous glycyl radical cofactor GrcA compare
EX28DRAFT_3079 -1.8 -0.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1609 -1.8 -10.3 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region/hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region compare
EX28DRAFT_3708 -1.8 -1.5 Transcriptional regulators compare
EX28DRAFT_3879 -1.8 -3.2 Glycosyltransferase compare
EX28DRAFT_2259 -1.8 -2.6 Cytochrome bd-type quinol oxidase, subunit 1 compare
EX28DRAFT_0322 -1.7 -6.9 NADH-quinone oxidoreductase, B subunit compare
EX28DRAFT_2250 -1.7 -2.6 peptidoglycan-associated lipoprotein compare
EX28DRAFT_0325 -1.7 -3.3 NADH-quinone oxidoreductase, F subunit compare
EX28DRAFT_3675 -1.7 -6.6 transcriptional regulator, LacI family compare
EX28DRAFT_2263 -1.7 -2.1 succinyl-CoA synthetase, alpha subunit compare
EX28DRAFT_0332 -1.7 -8.4 proton-translocating NADH-quinone oxidoreductase, chain L compare
EX28DRAFT_0948 -1.6 -1.4 hypothetical protein compare
EX28DRAFT_2075 -1.6 -3.2 type II secretion system protein H compare
EX28DRAFT_0922 -1.6 -2.6 TonB family C-terminal domain compare
EX28DRAFT_2045 -1.6 -0.8 thiol reductant ABC exporter, CydD subunit compare
EX28DRAFT_1031 -1.6 -1.1 Protein of unknown function (DUF2566) compare
EX28DRAFT_0579 -1.5 -1.5 Uncharacterized protein conserved in bacteria (DUF2256) compare
EX28DRAFT_2400 -1.5 -0.7 Cold shock proteins compare
EX28DRAFT_0623 -1.5 -2.6 Bacterial flagellin N-terminal helical region/Bacterial flagellin C-terminal helical region compare
EX28DRAFT_0330 -1.5 -3.7 NADH:ubiquinone oxidoreductase subunit 6 (chain J) compare
EX28DRAFT_0327 -1.5 -5.3 NADH-quinone oxidoreductase, chain G compare
EX28DRAFT_4507 -1.5 -3.1 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
EX28DRAFT_1438 -1.4 -1.9 Transcriptional regulators compare
EX28DRAFT_1128 -1.4 -1.3 hypothetical protein compare
EX28DRAFT_4191 -1.4 -2.4 small GTP-binding protein domain compare
EX28DRAFT_2958 -1.4 -1.1 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_0523 -1.4 -1.2 Glycosyltransferase like family 2 compare
EX28DRAFT_4475 -1.4 -2.8 Adenylate cyclase compare
EX28DRAFT_4155 -1.4 -2.7 DNA adenine methylase (dam) compare
EX28DRAFT_0038 -1.4 -1.3 K+ transport systems, NAD-binding component compare
EX28DRAFT_4349 -1.4 -1.4 hypothetical protein compare
EX28DRAFT_2008 -1.4 -5.0 Aspartate/tyrosine/aromatic aminotransferase compare
EX28DRAFT_0918 -1.4 -1.3 Ogr/Delta-like zinc finger compare
EX28DRAFT_0725 -1.3 -1.5 Activator of osmoprotectant transporter ProP compare
EX28DRAFT_2214 -1.3 -1.6 malonyl-acyl carrier protein O-methyltransferase BioC compare
EX28DRAFT_0901 -1.3 -1.3 hypothetical protein compare
EX28DRAFT_0092 -1.3 -1.4 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_3687 -1.3 -0.9 D-alanine--D-alanine ligase compare
EX28DRAFT_4318 -1.2 -3.8 Glucose-6-phosphate isomerase compare
EX28DRAFT_0333 -1.2 -4.3 proton-translocating NADH-quinone oxidoreductase, chain M compare
EX28DRAFT_0434 -1.2 -1.1 hypothetical protein compare
EX28DRAFT_0861 -1.2 -5.2 Response regulator receiver domain compare
EX28DRAFT_3264 -1.2 -6.4 PAS domain S-box compare
EX28DRAFT_0545 -1.2 -2.0 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_2037 -1.2 -1.5 DMSO reductase, iron-sulfur subunit compare
EX28DRAFT_0111 -1.2 -1.7 FeS cluster assembly scaffold IscU compare
EX28DRAFT_2695 -1.2 -2.3 pseudouridine synthase, RluA family compare
EX28DRAFT_1497 -1.2 -1.1 hypothetical protein compare
EX28DRAFT_2945 -1.1 -0.9 tyrosine recombinase XerD compare
EX28DRAFT_0132 -1.1 -4.3 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_1626 -1.1 -1.7 electron transport complex, RnfABCDGE type, D subunit compare
EX28DRAFT_2948 -1.1 -4.9 Uncharacterized conserved protein compare
EX28DRAFT_1650 -1.1 -1.6 ribonuclease T compare
EX28DRAFT_0779 -1.1 -2.8 hypothetical protein compare
EX28DRAFT_0329 -1.1 -3.9 NADH-quinone oxidoreductase, chain I compare
EX28DRAFT_0328 -1.1 -1.2 NADH:ubiquinone oxidoreductase subunit 1 (chain H) compare
EX28DRAFT_0286 -1.1 -1.0 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_0323 -1.1 -3.4 NADH (or F420H2) dehydrogenase, subunit C compare
EX28DRAFT_2796 -1.1 -3.1 transcriptional regulator, DeoR family compare
EX28DRAFT_0272 -1.1 -0.7 phosphohistidine phosphatase, SixA compare
EX28DRAFT_0706 -1.1 -1.4 Entner-Doudoroff aldolase compare
EX28DRAFT_4452 -1.1 -1.5 thioredoxin compare
EX28DRAFT_1565 -1.0 -0.9 Domain of unknown function (DUF1789) compare
EX28DRAFT_1527 -1.0 -2.1 hypothetical protein compare
EX28DRAFT_0001 -1.0 -2.0 Elongation factor Tu domain 2/Elongation factor Tu C-terminal domain compare
EX28DRAFT_3566 -1.0 -1.2 Uncharacterized conserved protein compare
EX28DRAFT_0769 -1.0 -0.9 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF compare
EX28DRAFT_0334 -1.0 -1.6 proton-translocating NADH-quinone oxidoreductase, chain N compare
EX28DRAFT_3423 -1.0 -1.6 Soluble cytochrome b562 compare
EX28DRAFT_2424 -1.0 -1.9 transcriptional regulator, TetR family compare
EX28DRAFT_1059 -1.0 -1.6 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog compare
EX28DRAFT_3282 -1.0 -1.1 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1050 -1.0 -2.2 luciferase family oxidoreductase, group 1 compare
EX28DRAFT_1839 -1.0 -4.4 phosphate:acyl-[acyl carrier protein] acyltransferase compare
EX28DRAFT_2974 -1.0 -3.9 transketolase, bacterial and yeast compare
EX28DRAFT_0531 -1.0 -4.0 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_3958 -1.0 -1.3 hypothetical protein compare
EX28DRAFT_4341 -0.9 -1.5 Protein-disulfide isomerase compare
EX28DRAFT_2532 -0.9 -1.8 RNA compare
EX28DRAFT_0977 -0.9 -1.2 phage shock protein B compare
EX28DRAFT_0687 -0.9 -1.6 tRNA (cmo5U34)-methyltransferase compare
EX28DRAFT_3605 -0.9 -1.4 Fructose-2,6-bisphosphatase compare
EX28DRAFT_2379 -0.9 -1.2 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components compare
EX28DRAFT_0972 -0.9 -0.8 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_3611 -0.9 -0.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
EX28DRAFT_0291 -0.9 -1.6 Uncharacterized membrane protein, required for colicin V production compare
EX28DRAFT_0392 -0.9 -0.9 hypothetical protein compare
EX28DRAFT_0166 -0.9 -5.1 polyphosphate kinase 1 compare
EX28DRAFT_0125 -0.9 -0.5 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_1383 -0.9 -0.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1823 -0.9 -1.9 Beta-glucosidase-related glycosidases compare
EX28DRAFT_2543 -0.9 -2.3 protoheme IX farnesyltransferase compare
EX28DRAFT_0593 -0.9 -5.1 DNA-methyltransferase (dcm) compare
EX28DRAFT_3353 -0.9 -1.5 Fumarate reductase subunit C compare
EX28DRAFT_0312 -0.9 -1.1 phosphate acetyltransferase compare
EX28DRAFT_0313 -0.9 -2.8 acetate kinase compare
EX28DRAFT_2472 -0.8 -0.5 Membrane protein implicated in regulation of membrane protease activity compare
EX28DRAFT_0469 -0.8 -2.1 hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
EX28DRAFT_2175 -0.8 -1.4 hypothetical protein compare
EX28DRAFT_0214 -0.8 -2.4 cysteine synthase A compare
EX28DRAFT_1417 -0.8 -2.0 phenylacetate-CoA oxygenase, PaaJ subunit compare
EX28DRAFT_1295 -0.8 -1.3 Protein of unknown function (DUF2570) compare
EX28DRAFT_2548 -0.8 -3.2 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_3893 -0.8 -1.6 ribonuclease PH compare
EX28DRAFT_0577 -0.8 -3.0 Arabinose efflux permease compare
EX28DRAFT_1967 -0.8 -2.5 hypothetical protein compare
EX28DRAFT_4324 -0.8 -1.5 probable addiction module antidote protein compare
EX28DRAFT_2845 -0.8 -1.1 Protein of unknown function (DUF3561) compare
EX28DRAFT_2371 -0.8 -1.5 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase compare
EX28DRAFT_1126 -0.8 -2.7 methyl-accepting chemotaxis sensory transducer with TarH sensor compare
EX28DRAFT_3614 -0.8 -4.1 aspartate kinase (EC 2.7.2.4) compare
EX28DRAFT_0129 -0.8 -0.6 RNA compare
EX28DRAFT_3449 -0.8 -1.2 Predicted membrane protein compare
EX28DRAFT_0620 -0.8 -0.9 Flagellar protein FliT compare
EX28DRAFT_0073 -0.8 -0.7 Negative regulator of sigma E activity compare
EX28DRAFT_4425 -0.8 -4.0 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
EX28DRAFT_1771 -0.8 -0.6 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0162 -0.8 -2.6 Transcriptional regulator compare
EX28DRAFT_1029 -0.7 -1.0 ABC-type spermidine/putrescine transport system, permease component II compare
EX28DRAFT_1093 -0.7 -2.0 uncharacterized peroxidase-related enzyme compare
EX28DRAFT_0091 -0.7 -0.5 hypothetical protein compare
EX28DRAFT_0876 -0.7 -0.3 hypothetical protein compare
EX28DRAFT_4459 -0.7 -3.3 TDP-4-keto-6-deoxy-D-glucose transaminase compare
EX28DRAFT_2222 -0.7 -2.9 formiminoglutamase (EC 3.5.3.8) compare
EX28DRAFT_1625 -0.7 -2.2 electron transport complex, RnfABCDGE type, C subunit compare
EX28DRAFT_3487 -0.7 -1.9 hypothetical protein compare
EX28DRAFT_2080 -0.7 -3.0 type II secretion system protein C compare
EX28DRAFT_0228 -0.7 -0.8 tRNA compare
EX28DRAFT_3966 -0.7 -3.8 D-serine ammonia-lyase (EC 4.3.1.18) compare
EX28DRAFT_0724 -0.7 -0.6 GAF domain-containing protein compare
EX28DRAFT_0084 -0.7 -1.4 4Fe-4S dicluster domain compare
EX28DRAFT_1881 -0.7 -4.1 Membrane glycosyltransferase compare
EX28DRAFT_0976 -0.7 -3.2 phage shock protein A (PspA) family protein compare
EX28DRAFT_2955 -0.7 -4.5 glycine dehydrogenase (decarboxylating) compare
EX28DRAFT_1180 -0.7 -1.2 DNA-binding HTH domain-containing proteins compare
EX28DRAFT_4373 -0.7 -1.6 Predicted nucleic acid-binding protein, contains PIN domain compare
EX28DRAFT_3045 -0.7 -1.6 tonB-system energizer ExbB compare
EX28DRAFT_3644 -0.7 -1.8 Uncharacterized protein affecting Mg2+/Co2+ transport compare
EX28DRAFT_3524 -0.7 -0.8 Protein of unknown function (DUF2778) compare
EX28DRAFT_0395 -0.7 -1.6 1-phosphofructokinase compare
EX28DRAFT_2070 -0.6 -1.4 Type II secretory pathway, component PulM compare
EX28DRAFT_3626 -0.6 -1.0 RNA compare
EX28DRAFT_2806 -0.6 -2.1 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific compare
EX28DRAFT_3936 -0.6 -0.8 hypothetical protein compare
EX28DRAFT_3616 -0.6 -2.1 threonine synthase compare
EX28DRAFT_2544 -0.6 -1.8 Arabinose efflux permease compare
EX28DRAFT_2786 -0.6 -1.7 amidohydrolase, PncC family compare
EX28DRAFT_2245 -0.6 -2.9 quinolinate synthetase (EC 2.5.1.72) compare
EX28DRAFT_2773 -0.6 -1.2 RNA compare
EX28DRAFT_4061 -0.6 -3.0 NADPH-glutathione reductase (EC 1.8.1.7) compare
EX28DRAFT_2644 -0.6 -1.8 Ogr/Delta-like zinc finger compare
EX28DRAFT_3109 -0.6 -1.0 Mu-like prophage FluMu protein gp41 compare
EX28DRAFT_0970 -0.6 -1.6 ABC-type antimicrobial peptide transport system, ATPase component compare
EX28DRAFT_1911 -0.6 -3.4 L-proline dehydrogenase (EC 1.5.99.8)/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) compare
EX28DRAFT_3492 -0.6 -2.0 Lactoylglutathione lyase and related lyases compare
EX28DRAFT_4145 -0.6 -1.0 NTP pyrophosphohydrolases including oxidative damage repair enzymes compare
EX28DRAFT_2774 -0.6 -2.1 glutamate-cysteine ligase (EC 6.3.2.2) compare
EX28DRAFT_1009 -0.6 -1.1 hypothetical protein compare
EX28DRAFT_0921 -0.6 -0.6 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3287 -0.6 -0.9 Protein of unknown function (DUF1471) compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in stress experiments

For stress casamino acids across organisms