Experiment set1IT057 for Caulobacter crescentus NA1000 Δfur

Compare to:

PYE with CHIR-090 40 ug/mL

200 most important genes:

  gene name fitness t score description  
CCNA_02962 -4.6 -1.6 HicB-family RNAse H fold protein compare
CCNA_02286 -4.1 -1.4 hypothetical protein compare
CCNA_01279 -3.8 -2.5 inorganic polyphosphate/ATP-NAD kinase compare
CCNA_03931 -3.6 -1.2 hypothetical protein compare
CCNA_00349 -3.5 -2.4 integrase/recombinase, XerC-CodV family compare
CCNA_01496 -3.5 -2.1 2-dehydro-3-deoxyphosphooctonate aldolase compare
CCNA_01211 -3.5 -5.3 MobA-like NTP transferase domain protein compare
CCNA_03072 -3.2 -2.2 TetR-family transcriptional regulator compare
CCNA_00893 -3.2 -3.7 helix-turn-helix DNA-binding protein compare
CCNA_01556 -3.1 -2.2 LacI-family transcriptional regulator compare
CCNA_00239 -3.0 -1.7 serine kinase/phosphatase HprK compare
CCNA_01214 -2.9 -4.4 YjgP/YjgQ family membrane permease compare
CCNA_01988 -2.9 -2.0 UDP-N-acetylglucosamine O-acyltransferase LpxA compare
CCNA_03336 -2.8 -5.8 Tol system periplasmic component YbgF compare
CCNA_03786 -2.8 -3.3 heme chaperone heme-lyase compare
CCNA_00379 -2.8 -1.9 thiol:disulfide interchange protein dsbA compare
CCNA_02645 -2.7 -2.6 S-adenosyl-methyltransferase MraW compare
CCNA_02922 -2.7 -2.4 hypothetical protein compare
CCNA_01222 -2.7 -9.3 NADH-ubiquinone oxidoreductase compare
CCNA_01218 -2.7 -13.0 sphingosine kinase/diacylglycerol kinase-related protein compare
CCNA_01220 -2.7 -10.7 7-keto-8-aminopelargonate synthetase compare
CCNA_02387 -2.7 -1.5 glutathione reductase compare
CCNA_03683 -2.7 -1.8 maleylpyruvate isomerase compare
CCNA_01213 -2.6 -5.1 YjgP/YjgQ family membrane permease compare
CCNA_01224 -2.6 -8.8 O-antigen membrane transport protein compare
CCNA_02650 -2.6 -3.9 N-acetyl-anhydromuramyl-L-alanine amidase compare
CCNA_01212 -2.6 -13.8 dATP pyrophosphohydrolase compare
CCNA_01676 -2.6 -1.8 hypothetical protein compare
CCNA_02085 -2.5 -4.2 anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase compare
CCNA_01060 -2.5 -3.0 type I protein secretion ATP-binding protein RsaD compare
CCNA_02329 -2.5 -1.7 exodeoxyribonuclease VII large subunit compare
CCNA_01223 -2.4 -15.0 acyl-CoA synthetase compare
CCNA_01217 -2.3 -13.3 phosphatidylglycerophosphate synthase compare
CCNA_00951 -2.3 -4.7 flagellar motor switch protein FliG compare
CCNA_03859 -2.3 -3.1 two-component response regulator cenR compare
CCNA_01118 -2.3 -1.7 hypothetical protein compare
CCNA_03783 -2.2 -1.8 cytochrome c biogenesis ABC transporter permease component CcmB compare
CCNA_03548 -2.1 -6.8 carboxy-terminal processing protease precursor compare
CCNA_02390 -2.1 -3.5 phosphoglycolate phosphatase compare
CCNA_03337 -2.1 -2.6 peptidoglycan-associated lipoprotein pal compare
CCNA_01221 -2.1 -4.3 acyl carrier protein compare
CCNA_00976 -2.1 -2.5 signal peptide peptidase A compare
CCNA_00953 -2.1 -2.6 flagellar motor switch protein FliN compare
CCNA_01971 -2.0 -2.7 peptidyl-prolyl cis-trans isomerase compare
CCNA_03788 -2.0 -3.5 thiol:disulfide interchange protein tlpA compare
CCNA_00293 -1.9 -2.9 phosphate transport system permease protein pstA compare
CCNA_01407 -1.9 -3.4 hypothetical protein compare
CCNA_02521 -1.9 -1.7 endonuclease involved in recombination compare
CCNA_01968 -1.9 -1.6 pentapeptide repeats containing protein compare
CCNA_01275 -1.9 -1.8 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase compare
CCNA_00057 -1.8 -1.3 glycoprotease family protein compare
CCNA_01210 -1.8 -6.5 nucleotidyltransferase family protein compare
CCNA_00306 -1.8 -5.1 lysophospholipid acyltransferase compare
CCNA_03516 -1.8 -2.9 protoheme IX farnesyltransferase coxE compare
CCNA_00708 -1.8 -2.6 cobaltochelatase cobT subunit compare
CCNA_03650 -1.8 -2.6 mannose-1-phosphate guanyltransferase compare
CCNA_01219 -1.7 -5.7 putative cytosolic protein compare
CCNA_03755 -1.7 -5.7 bifunctional D-glycero-D-manno-heptose-7-phosphate 1-kinase/D-glycero-D-manno-heptose-1-phosphate adenylyltransferase compare
CCNA_00252 -1.7 -8.1 multimodular transpeptidase-transglycosylase PbpX compare
CCNA_01802 -1.7 -0.8 hypothetical protein compare
CCNA_01130 -1.7 -3.7 flagellar biosynthesis protein FliR compare
CCNA_03547 -1.7 -3.0 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_03052 -1.7 -4.2 acyltransferase compare
CCNA_00128 -1.6 -1.7 argininosuccinate synthase compare
CCNA_03732 -1.6 -4.0 N-acyl-D-glucosamine 2-epimerase compare
CCNA_02847 -1.6 -3.7 cytochrome c-type biogenesis protein ccmH compare
CCNA_00135 -1.6 -5.9 trypsin-like peptidase compare
CCNA_03835 -1.6 -2.6 3-oxoacyl-(acyl-carrier-protein) synthase compare
CCNA_01795 -1.6 -2.9 phosphopyruvate hydratase compare
CCNA_02094 -1.5 -2.5 MviM-like NAD-dependent oxidoreductase compare
CCNA_02320 -1.5 -4.5 2'-deoxycytidine 5'-triphosphate deaminase compare
CCNA_03782 -1.5 -1.7 cytochrome c biogenesis ATP-binding export protein CcmA compare
CCNA_03277 -1.5 -4.0 glycosyltransferase compare
CCNA_01538 -1.5 -1.4 pyruvate phosphate dikinase compare
CCNA_01964 -1.4 -1.2 NADH dehydrogenase compare
CCNA_02064 -1.4 -1.3 UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase compare
CCNA_03651 -1.4 -3.0 ATP-dependent nuclease subunit B compare
CCNA_02075 -1.4 -4.2 peptidoglycan binding endopeptidase DipM compare
CCNA_00952 -1.4 -3.3 flagellar assembly protein FlbE/FliH compare
CCNA_00134 -1.4 -4.6 surface protein compare
CCNA_01675 -1.4 -1.7 outer membrane protein compare
CCNA_03101 -1.3 -2.4 site-specific tyrosine recombinase XerD compare
CCNA_03872 -1.3 -4.7 tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase compare
CCNA_03790 -1.3 -2.4 hypothetical protein compare
CCNA_01430 -1.3 -2.2 hypothetical protein compare
CCNA_00292 -1.3 -2.9 phosphate transport system permease protein pstC compare
CCNA_01817 -1.2 -3.1 nitrogen assimilation regulatory protein ntrX compare
CCNA_00036 -1.2 -2.0 ribosome-binding factor A compare
CCNA_01226 -1.2 -6.9 hypothetical protein compare
CCNA_01103 -1.2 -3.4 ADP-heptose--LPS heptosyltransferase compare
CCNA_01638 -1.2 -5.3 beta-lactamase family protein compare
CCNA_03013 -1.2 -3.9 alkyl hydroperoxide reductase subunit F compare
CCNA_02942 -1.2 -3.9 nucleoside-diphosphate-sugar epimerase compare
CCNA_03496 -1.2 -0.9 hypothetical protein compare
CCNA_03135 -1.1 -4.3 flagellum-specific ATP synthase fliL compare
CCNA_00459 -1.1 -4.0 Na+/H+ antiporter nhaA compare
CCNA_02248 -1.1 -1.4 hypothetical protein compare
CCNA_03201 -1.1 -7.4 adenylosuccinate synthetase compare
CCNA_00296 -1.1 -5.1 phosphate regulon response regulator PhoB compare
CCNA_00011 -1.1 -3.4 chaperone protein DnaJ compare
CCNA_02849 -1.1 -1.4 cytochrome c-type biogenesis heme chaperone compare
CCNA_03609 -1.1 -4.7 outer membrane protein compare
CCNA_00304 -1.1 -2.4 3-deoxy-D-manno-octulosonic-acid transferase compare
CCNA_00956 -1.1 -4.4 flagellar biosynthesis protein FlhA compare
CCNA_02644 -1.1 -1.4 cell division protein FtsL compare
CCNA_02344 -1.0 -1.5 phosphoglycerate mutase compare
CCNA_03358 -1.0 -2.1 glyceraldehyde 3-phosphate dehydrogenase compare
CCNA_00001 -1.0 -4.5 ATP/GTP-binding protein compare
CCNA_03026 -1.0 -3.3 two-component response regulator petR compare
CCNA_02060 -1.0 -1.9 CrcB family protein compare
CCNA_00892 -1.0 -3.3 phosphoenolpyruvate-protein phosphotransferase PtsP compare
CCNA_02449 -1.0 -3.3 hypothetical protein compare
CCNA_03975 -1.0 -0.6 hypothetical protein compare
CCNA_02925 -1.0 -2.3 carbamoyl-phosphate synthase small chain compare
CCNA_02278 -1.0 -0.7 hypothetical protein compare
CCNA_01889 -1.0 -5.3 long-chain-fatty-acid--CoA ligase compare
CCNA_03021 -1.0 -0.8 hypothetical protein compare
CCNA_01467 -0.9 -5.9 cytochrome cbb3 oxidase subunit I ccoN compare
CCNA_00240 -0.9 -1.6 PTS system, IIA component compare
CCNA_03878 -0.9 -1.8 ferrochelatase compare
CCNA_00257 -0.9 -4.0 adenosylhomocysteinase compare
CCNA_03916 -0.9 -1.3 hypothetical protein compare
CCNA_01844 -0.9 -2.5 DNA integration/recombination/inversion protein compare
CCNA_00897 -0.9 -1.7 hypothetical protein compare
CCNA_02488 -0.9 -3.3 acetate/3-ketoacid CoA transferase, subunit A compare
CCNA_00641 -0.9 -3.0 hypothetical protein compare
CCNA_01784 -0.9 -1.5 hypothetical protein compare
CCNA_00502 -0.9 -2.5 glycosyl transferase family protein compare
CCNA_01876 -0.9 -4.4 oxidoreductase compare
CCNA_00572 -0.9 -1.3 PTS system, N-acetylglucosamine-specific IIBC component compare
CCNA_02844 -0.9 -0.9 antitoxin protein parD-3 compare
CCNA_01120 -0.8 -2.5 hypothetical protein compare
CCNA_02004 -0.8 -1.7 SOS-induced inhibitor of cell division SidA compare
CCNA_02778 -0.8 -3.4 hypothetical protein compare
CCNA_03138 -0.8 -3.6 peroxidase/catalase katG compare
CCNA_01123 -0.8 -4.2 peptide chain release factor RF-3 compare
CCNA_02572 -0.8 -3.2 adenylosuccinate lyase compare
CCNA_02469 -0.8 -4.8 protein hipA compare
CCNA_00963 -0.8 -2.6 organic hydroperoxide resistance protein compare
CCNA_01955 -0.8 -3.4 zinc metalloprotease compare
CCNA_03401 -0.8 -2.4 conserved hypothetical cytosolic protein compare
CCNA_01477 -0.8 -4.7 oxygen-independent coproporphyrinogen-III oxidase hemN compare
CCNA_01131 -0.8 -3.0 flagellar biosynthesis protein FlhB compare
CCNA_02326 -0.8 -1.9 acetylornithine aminotransferase/succinyldiaminopimelate aminotransferase compare
CCNA_03273 -0.8 -4.2 hypothetical protein compare
CCNA_00950 -0.8 -3.3 flagellar M-ring protein FliF compare
CCNA_01469 -0.8 -1.9 cytochrome cbb3 oxidase, subunit ccoQ compare
CCNA_00197 -0.8 -1.3 LSU ribosomal protein L19P compare
CCNA_00131 -0.7 -2.7 Rrf2 family protein compare
CCNA_01002 -0.7 -1.2 flagellar biosyntheis protein FliP compare
CCNA_03321 -0.7 -4.0 VanZ superfamily protein compare
CCNA_01162 -0.7 -5.4 beta-D-glucoside glucohydrolase compare
CCNA_01732 -0.7 -1.3 DNA repair protein RadA compare
CCNA_02250 -0.7 -3.7 methylcrotonyl-CoA carboxylase biotin-containing subunit compare
CCNA_01883 -0.7 -3.6 acyl-CoA dehydrogenase compare
CCNA_03657 -0.7 -1.8 tryptophan synthase alpha chain compare
CCNA_02479 -0.7 -4.5 aryl-alcohol dehydrogenase compare
CCNA_03705 -0.7 -1.2 hypothetical protein compare
CCNA_01474 -0.7 -2.8 cytochrome cbb3 oxidase maturation protein ccoS compare
CCNA_03983 -0.7 -1.4 HicA-related toxin-antitoxin protein compare
CCNA_01910 -0.7 -2.9 ABC transporter substrate-binding protein compare
CCNA_01785 -0.7 -2.0 hypothetical protein compare
CCNA_02120 -0.7 -3.0 tetratricopeptide repeat family protein compare
CCNA_01909 -0.7 -4.2 ABC transporter substrate-binding protein compare
CCNA_01944 -0.7 -1.3 McrA-family restriction endonuclease compare
CCNA_02481 -0.7 -5.0 TonB-dependent receptor compare
CCNA_00747 -0.7 -2.8 cyclic-di-GMP phosphodiesterase, flagellum assembly factor TipF compare
CCNA_03861 -0.7 -1.4 pyridoxal 5'-phosphate dependent enzyme class III compare
CCNA_00255 -0.7 -3.1 esterase compare
CCNA_03464 -0.7 -1.5 glycine cleavage system H protein compare
CCNA_02279 -0.6 -1.1 disulfide bond formation protein B compare
CCNA_00512 -0.6 -2.7 GTP-binding protein, probable translation factor compare
CCNA_01442 -0.6 -0.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
CCNA_01461 -0.6 -2.7 hypothetical protein compare
CCNA_02487 -0.6 -3.9 4-hydroxybenzoate 3-monooxygenase compare
CCNA_00644 -0.6 -4.4 hypothetical protein compare
CCNA_R0075 -0.6 -1.2 tRNA-Met compare
CCNA_03136 -0.6 -1.9 flagellar export protein FliJ compare
CCNA_00137 -0.6 -4.2 hybrid two-component histidine kinase/receiver protein ShkA compare
CCNA_01837 -0.6 -3.3 transposase, IS30 family compare
CCNA_03114 -0.6 -2.1 hypothetical protein compare
CCNA_03891 -0.6 -2.0 hypothetical protein compare
CCNA_01377 -0.6 -2.2 hypothetical protein compare
CCNA_02328 -0.6 -0.9 cell cycle regulatory protein GcrA compare
CCNA_00853 -0.6 -3.4 3-isopropylmalate dehydrogenase compare
CCNA_00607 -0.6 -5.0 TonB-dependent receptor compare
CCNA_02848 -0.6 -1.5 heme chaperone-apocytochrome heme-lyase compare
CCNA_03736 -0.6 -0.6 YGGT family membrane protein compare
CCNA_01510 -0.6 -2.5 hypothetical protein compare
CCNA_00850 -0.6 -5.0 cation/multidrug efflux pump acrB2 compare
CCNA_02232 -0.6 -4.4 TonB-dependent receptor compare
CCNA_00264 -0.6 -2.6 C4-dicarboxylate transport protein compare
CCNA_03274 -0.6 -0.8 hypothetical protein compare
CCNA_01047 -0.6 -4.7 TonB-dependent receptor compare
CCNA_03652 -0.6 -1.8 ATP-dependent nuclease subunit A compare
CCNA_00670 -0.6 -1.6 ABC-type polysaccharide/polyol phosphate transport system, ATPase component compare
CCNA_01171 -0.6 -3.1 histidine phosphotransferase ShpA compare
CCNA_03031 -0.6 -1.7 NlpC/P60 family protein compare
CCNA_03702 -0.6 -0.8 SSU ribosomal protein S1P compare
CCNA_03713 -0.6 -2.1 RNA polymerase sigma-54 factor rpoN compare


Specific Phenotypes

None in this experiment

For Caulobacter crescentus NA1000 Δfur in stress experiments

For stress CHIR-090 across organisms