Experiment set1IT056 for Pseudomonas sp. RS175

Compare to:

Cytidine carbon 10 mM

200 most important genes:

  gene name fitness t score description  
PFR28_04071 -5.3 -1.8 Multifunctional CCA protein compare
PFR28_02823 -4.8 -2.8 3-isopropylmalate dehydratase small subunit 1 compare
PFR28_01460 -4.0 -1.4 Glutamine transport ATP-binding protein GlnQ compare
PFR28_00780 -4.0 -1.4 hypothetical protein compare
PFR28_04202 -3.3 -7.8 5,10-methylenetetrahydrofolate reductase compare
PFR28_03697 -3.2 -12.6 Ketol-acid reductoisomerase (NADP(+)) compare
PFR28_00926 -3.1 -3.2 hypothetical protein compare
PFR28_03724 -3.1 -8.3 Glucose-6-phosphate isomerase compare
PFR28_02824 -2.9 -6.9 3-isopropylmalate dehydratase large subunit compare
PFR28_02821 -2.8 -13.6 3-isopropylmalate dehydrogenase compare
PFR28_04932 -2.7 -5.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PFR28_04120 -2.7 -2.2 hypothetical protein compare
PFR28_05016 -2.7 -11.1 Glutamate synthase [NADPH] small chain compare
PFR28_05015 -2.7 -17.4 Glutamate synthase [NADPH] large chain compare
PFR28_00730 -2.5 -2.5 5-oxoprolinase subunit C compare
PFR28_04278 -2.4 -8.4 Dihydroxy-acid dehydratase compare
PFR28_04933 -2.4 -2.8 Imidazole glycerol phosphate synthase subunit HisF compare
PFR28_03412 -2.3 -6.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PFR28_03699 -2.2 -7.2 Acetolactate synthase isozyme 3 large subunit compare
PFR28_04929 -2.1 -4.3 Histidine biosynthesis bifunctional protein HisB compare
PFR28_00861 -2.1 -8.6 Chemotaxis protein CheW compare
PFR28_03698 -2.1 -8.1 Acetolactate synthase isozyme 3 small subunit compare
PFR28_03860 -2.1 -3.2 putative murein peptide carboxypeptidase compare
PFR28_00187 -2.1 -9.5 Histidinol dehydrogenase compare
PFR28_02613 -2.0 -8.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
PFR28_05105 -2.0 -7.8 Phosphoserine phosphatase SerB2 compare
PFR28_02734 -2.0 -4.0 Ribose operon repressor compare
PFR28_04089 -2.0 -1.3 PqqA binding protein compare
PFR28_05125 -2.0 -5.9 ATP phosphoribosyltransferase regulatory subunit compare
PFR28_03714 -2.0 -9.1 RNA polymerase-binding transcription factor DksA compare
PFR28_04842 -1.9 -5.0 D-3-phosphoglycerate dehydrogenase compare
PFR28_00855 -1.9 -4.9 hypothetical protein compare
PFR28_02735 -1.9 -3.8 Ribose import permease protein RbsC compare
PFR28_04345 -1.9 -10.9 Polyphosphate kinase compare
PFR28_00068 -1.9 -1.1 hypothetical protein compare
PFR28_01319 -1.9 -9.0 1,4-alpha-glucan branching enzyme GlgB compare
PFR28_00990 -1.9 -2.3 Free methionine-R-sulfoxide reductase compare
PFR28_00851 -1.8 -1.8 Flagellum site-determining protein YlxH compare
PFR28_02733 -1.8 -3.2 Ribokinase compare
PFR28_01672 -1.8 -3.6 hypothetical protein compare
PFR28_04930 -1.7 -5.5 Imidazole glycerol phosphate synthase subunit HisH compare
PFR28_04921 -1.7 -2.3 hypothetical protein compare
PFR28_04059 -1.7 -8.9 N-acetylmuramate alpha-1-phosphate uridylyltransferase compare
PFR28_05078 -1.7 -2.5 hypothetical protein compare
PFR28_00305 -1.7 -6.8 2-isopropylmalate synthase compare
PFR28_01263 -1.7 -5.2 HTH-type transcriptional regulator CueR compare
PFR28_03718 -1.7 -3.6 Transcriptional regulatory protein ZraR compare
PFR28_00853 -1.7 -4.8 Chemotaxis protein CheY compare
PFR28_00561 -1.7 -3.2 Phosphogluconate dehydratase compare
PFR28_00573 -1.6 -7.4 Glucose-6-phosphate 1-dehydrogenase compare
PFR28_01879 -1.6 -1.4 hypothetical protein compare
PFR28_00928 -1.6 -2.9 putative sugar transferase EpsL compare
PFR28_01365 -1.6 -3.8 hypothetical protein compare
PFR28_03413 -1.6 -2.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PFR28_02983 -1.6 -5.4 HTH-type transcriptional regulator XynR compare
PFR28_03951 -1.6 -1.2 hypothetical protein compare
PFR28_01553 -1.6 -4.2 hypothetical protein compare
PFR28_02957 -1.6 -1.3 Fatty acid oxidation complex subunit alpha compare
PFR28_04986 -1.5 -3.7 Phosphoribosyl-AMP cyclohydrolase compare
PFR28_01376 -1.5 -1.7 hypothetical protein compare
PFR28_02736 -1.5 -4.7 Arabinose import ATP-binding protein AraG compare
PFR28_03151 -1.5 -2.0 Septum site-determining protein MinC compare
PFR28_00930 -1.5 -5.6 GDP-perosamine synthase compare
PFR28_03255 -1.5 -7.4 Chemotaxis protein methyltransferase Cher2 compare
PFR28_04834 -1.4 -8.5 L-threonine dehydratase biosynthetic IlvA compare
PFR28_04064 -1.4 -2.9 Ribosomal RNA small subunit methyltransferase A compare
PFR28_02811 -1.4 -4.5 Amidophosphoribosyltransferase compare
PFR28_00403 -1.4 -3.7 Regulator of sigma-E protease RseP compare
PFR28_02608 -1.4 -1.3 DNA translocase FtsK compare
PFR28_03414 -1.4 -2.7 Crossover junction endodeoxyribonuclease RuvC compare
PFR28_04485 -1.4 -2.4 Phosphate-specific transport system accessory protein PhoU compare
PFR28_04585 -1.4 -4.2 Chromosome partitioning protein ParA compare
PFR28_00186 -1.4 -3.5 ATP phosphoribosyltransferase compare
PFR28_00927 -1.4 -7.6 D-inositol-3-phosphate glycosyltransferase compare
PFR28_04262 -1.3 -3.4 Ribosomal RNA small subunit methyltransferase D compare
PFR28_01060 -1.3 -5.2 HTH-type transcriptional repressor NanR compare
PFR28_03191 -1.3 -1.0 hypothetical protein compare
PFR28_03223 -1.3 -7.0 GTP pyrophosphokinase compare
PFR28_01933 -1.3 -2.4 Putative tartrate transporter compare
PFR28_01777 -1.3 -1.0 putative trans-3-hydroxy-L-proline dehydratase compare
PFR28_00918 -1.3 -5.6 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
PFR28_00729 -1.3 -5.6 5-oxoprolinase subunit B compare
PFR28_05006 -1.3 -10.6 Penicillin-binding protein 1A compare
PFR28_03482 -1.3 -6.8 Sensor histidine kinase RcsC compare
PFR28_01359 -1.3 -1.5 hypothetical protein compare
PFR28_02737 -1.3 -2.4 Ribose import binding protein RbsB compare
PFR28_01907 -1.3 -1.4 hypothetical protein compare
PFR28_03266 -1.2 -1.6 hypothetical protein compare
PFR28_00228 -1.2 -2.1 hypothetical protein compare
PFR28_03854 -1.2 -4.4 hypothetical protein compare
PFR28_03666 -1.2 -2.1 hypothetical protein compare
PFR28_00176 -1.2 -1.1 Lipopolysaccharide export system protein LptC compare
PFR28_04245 -1.2 -6.6 Homoserine O-succinyltransferase compare
PFR28_01519 -1.2 -3.5 Hydroxypyruvate reductase compare
PFR28_03883 -1.2 -4.5 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase compare
PFR28_01142 -1.2 -7.1 Transaldolase compare
PFR28_04782 -1.2 -6.9 hypothetical protein compare
PFR28_00728 -1.2 -5.7 5-oxoprolinase subunit A 3 compare
PFR28_03323 -1.2 -2.6 Transcriptional regulatory protein CpxR compare
PFR28_01934 -1.1 -1.8 Creatinine amidohydrolase compare
PFR28_03304 -1.1 -1.1 hypothetical protein compare
PFR28_03598 -1.1 -5.4 Penicillin-binding protein activator LpoA compare
PFR28_01094 -1.1 -3.4 hypothetical protein compare
PFR28_02652 -1.1 -3.1 HTH-type transcriptional regulator CdhR compare
PFR28_04584 -1.1 -2.3 putative chromosome-partitioning protein ParB compare
PFR28_00873 -1.1 -4.0 hypothetical protein compare
PFR28_02872 -1.1 -0.9 hypothetical protein compare
PFR28_01366 -1.1 -5.1 Sulfite reductase [ferredoxin] compare
PFR28_01173 -1.1 -1.2 hypothetical protein compare
PFR28_01930 -1.1 -2.1 HTH-type transcriptional regulator McbR compare
PFR28_00356 -1.1 -3.2 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
PFR28_02102 -1.1 -1.6 hypothetical protein compare
PFR28_02283 -1.1 -2.1 hypothetical protein compare
PFR28_00938 -1.1 -2.3 hypothetical protein compare
PFR28_04308 -1.1 -2.2 Amino-acid acetyltransferase compare
PFR28_00916 -1.1 -7.0 UDP-N-acetylglucosamine 2-epimerase compare
PFR28_05201 -1.1 -1.7 Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] compare
PFR28_01116 -1.1 -3.4 Cell division inhibitor SulA compare
PFR28_00164 -1.1 -1.6 hypothetical protein compare
PFR28_04643 -1.1 -2.3 hypothetical protein compare
PFR28_00194 -1.0 -5.2 Bifunctional enzyme CysN/CysC compare
PFR28_02403 -1.0 -1.2 Na(+)/H(+) antiporter subunit C1 compare
PFR28_01431 -1.0 -1.3 Chemotaxis protein CheW compare
PFR28_04246 -1.0 -4.6 Bifunctional methionine biosynthesis protein MetXA/MetW compare
PFR28_00932 -1.0 -8.3 UDP-N-acetyl-alpha-D-glucosamine C6 dehydratase compare
PFR28_04363 -1.0 -2.2 Protein HemY compare
PFR28_03483 -1.0 -6.9 hypothetical protein compare
PFR28_03485 -1.0 -4.6 Cytochrome c551 peroxidase compare
PFR28_00917 -1.0 -5.6 UDP-N-acetyl-D-mannosamine dehydrogenase compare
PFR28_04667 -1.0 -1.4 Transcriptional regulatory protein OmpR compare
PFR28_00292 -1.0 -2.7 Protein IscX compare
PFR28_02810 -1.0 -5.6 O-succinylhomoserine sulfhydrylase compare
PFR28_01408 -1.0 -2.2 hypothetical protein compare
PFR28_00425 -1.0 -6.0 Protein-L-isoaspartate O-methyltransferase compare
PFR28_00844 -1.0 -0.9 hypothetical protein compare
PFR28_03322 -1.0 -1.8 hypothetical protein compare
PFR28_03680 -1.0 -1.1 hypothetical protein compare
PFR28_03420 -1.0 -2.4 hypothetical protein compare
PFR28_02201 -1.0 -1.1 Chaperone SurA compare
PFR28_05139 -0.9 -1.3 hypothetical protein compare
PFR28_03260 -0.9 -3.3 Flagellar brake protein YcgR compare
PFR28_02603 -0.9 -2.7 Siroheme synthase compare
PFR28_04377 -0.9 -2.7 hypothetical protein compare
PFR28_03511 -0.9 -1.9 HTH-type transcriptional repressor NagR compare
PFR28_05036 -0.9 -0.8 Acyl carrier protein compare
PFR28_03931 -0.9 -2.8 hypothetical protein compare
PFR28_00193 -0.9 -4.7 Sulfate adenylyltransferase subunit 2 compare
PFR28_02206 -0.9 -1.3 Biopolymer transport protein ExbD compare
PFR28_04830 -0.9 -5.3 Phosphoenolpyruvate-dependent phosphotransferase system compare
PFR28_00856 -0.9 -3.5 Protein-glutamate methylesterase/protein-glutamine glutaminase 1 compare
PFR28_02008 -0.9 -2.2 hypothetical protein compare
PFR28_00442 -0.9 -1.5 hypothetical protein compare
PFR28_00126 -0.9 -1.9 Dipeptide transport system permease protein DppC compare
PFR28_03844 -0.9 -2.8 Thiamine-phosphate synthase compare
PFR28_02009 -0.9 -0.8 HTH-type transcriptional regulator PgrR compare
PFR28_04586 -0.8 -2.6 Ribosomal RNA small subunit methyltransferase G compare
PFR28_05205 -0.8 -2.1 Precorrin-8X methylmutase compare
PFR28_04518 -0.8 -4.6 2-oxoglutarate carboxylase small subunit compare
PFR28_00041 -0.8 -2.4 Leucine-responsive regulatory protein compare
PFR28_03880 -0.8 -2.4 hypothetical protein compare
PFR28_01221 -0.8 -1.8 hypothetical protein compare
PFR28_03487 -0.8 -4.2 Adaptive-response sensory-kinase SasA compare
PFR28_02372 -0.8 -2.5 hypothetical protein compare
PFR28_00572 -0.8 -4.0 HTH-type transcriptional regulator HexR compare
PFR28_00694 -0.8 -2.6 Beta-barrel assembly-enhancing protease compare
PFR28_02893 -0.8 -1.5 hypothetical protein compare
PFR28_01043 -0.8 -1.8 hypothetical protein compare
PFR28_03486 -0.8 -4.9 Adaptive-response sensory-kinase SasA compare
PFR28_03721 -0.8 -2.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFR28_00149 -0.8 -3.9 hypothetical protein compare
PFR28_04564 -0.8 -5.4 Aspartate-semialdehyde dehydrogenase compare
PFR28_02800 -0.8 -0.6 hypothetical protein compare
PFR28_01668 -0.8 -2.0 hypothetical protein compare
PFR28_00764 -0.8 -1.6 hypothetical protein compare
PFR28_05246 -0.8 -1.7 hypothetical protein compare
PFR28_01297 -0.8 -2.1 Intermembrane transport protein YebS compare
PFR28_04072 -0.8 -2.0 Bifunctional folate synthesis protein compare
PFR28_03282 -0.7 -2.8 Arginine N-succinyltransferase subunit alpha compare
PFR28_02507 -0.7 -1.0 Phosphoglycolate phosphatase compare
PFR28_02485 -0.7 -2.5 hypothetical protein compare
PFR28_04074 -0.7 -1.6 Glycerol-3-phosphate acyltransferase compare
PFR28_02924 -0.7 -1.4 2-methyl-aconitate isomerase compare
PFR28_02559 -0.7 -1.4 hypothetical protein compare
PFR28_03664 -0.7 -1.6 Ribosome-binding ATPase YchF compare
PFR28_03627 -0.7 -1.4 SOS response-associated protein YedK compare
PFR28_02127 -0.7 -0.8 hypothetical protein compare
PFR28_05144 -0.7 -1.4 hypothetical protein compare
PFR28_05204 -0.7 -1.4 Sulfite reductase [ferredoxin] compare
PFR28_03596 -0.7 -1.1 Transcriptional regulator MraZ compare
PFR28_03484 -0.7 -3.4 hypothetical protein compare
PFR28_00424 -0.7 -2.6 '5'-nucleotidase SurE' transl_table=11 compare
PFR28_01332 -0.7 -2.4 Zinc transporter ZupT compare
PFR28_03087 -0.7 -3.0 hypothetical protein compare
PFR28_02198 -0.7 -2.2 hypothetical protein compare
PFR28_01317 -0.7 -4.7 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase 2 compare
PFR28_05079 -0.7 -4.1 hypothetical protein compare
PFR28_04992 -0.7 -0.9 hypothetical protein compare
PFR28_01943 -0.7 -1.9 Putative isomerase YbhH compare
PFR28_02997 -0.7 -2.2 hypothetical protein compare
PFR28_00915 -0.7 -3.1 Chain length determinant protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Cytidine in Pseudomonas sp. RS175

For carbon source Cytidine across organisms