Experiment set1IT056 for Enterobacter asburiae PDN3

Compare to:

M9 with casamino acids and trichloroethylene 76.3 uM

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_2252 -3.9 -3.2 TolA protein compare
EX28DRAFT_3611 -3.8 -1.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
EX28DRAFT_2265 -3.7 -3.3 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_2027 -3.7 -6.8 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_3419 -3.6 -13.8 Fructose-1,6-bisphosphatase compare
EX28DRAFT_4544 -3.6 -2.7 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_3285 -3.6 -8.3 malate dehydrogenase (NAD) (EC 1.1.1.37) compare
EX28DRAFT_0932 -3.4 -6.7 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
EX28DRAFT_0933 -3.3 -13.6 tryptophan synthase, beta subunit compare
EX28DRAFT_0934 -3.3 -12.8 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_0092 -3.1 -2.1 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_3711 -3.1 -1.5 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_2270 -3.0 -1.5 succinate dehydrogenase subunit C (EC 1.3.5.1) compare
EX28DRAFT_2269 -2.9 -10.8 succinate dehydrogenase, hydrophobic membrane anchor protein compare
EX28DRAFT_3336 -2.8 -12.1 aspartate ammonia-lyase compare
EX28DRAFT_0292 -2.8 -4.4 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_1986 -2.7 -1.4 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_0769 -2.7 -2.0 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF compare
EX28DRAFT_0321 -2.7 -1.4 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
EX28DRAFT_2267 -2.7 -5.5 succinate dehydrogenase and fumarate reductase iron-sulfur protein compare
EX28DRAFT_2264 -2.7 -11.6 succinyl-CoA synthetase, beta subunit compare
EX28DRAFT_0935 -2.7 -7.8 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
EX28DRAFT_3079 -2.6 -1.3 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4318 -2.5 -4.6 Glucose-6-phosphate isomerase compare
EX28DRAFT_0331 -2.5 -3.6 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_1706 -2.4 -11.5 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
EX28DRAFT_0284 -2.4 -9.2 Phosphoglycerate dehydrogenase and related dehydrogenases compare
EX28DRAFT_0936 -2.4 -6.4 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_0328 -2.3 -2.2 NADH:ubiquinone oxidoreductase subunit 1 (chain H) compare
EX28DRAFT_2259 -2.3 -4.7 Cytochrome bd-type quinol oxidase, subunit 1 compare
EX28DRAFT_0324 -2.3 -2.4 NADH-quinone oxidoreductase, E subunit compare
EX28DRAFT_0111 -2.2 -3.0 FeS cluster assembly scaffold IscU compare
EX28DRAFT_3710 -2.2 -6.6 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_3646 -2.1 -7.1 4-hydroxythreonine-4-phosphate dehydrogenase compare
EX28DRAFT_0323 -2.1 -7.8 NADH (or F420H2) dehydrogenase, subunit C compare
EX28DRAFT_2348 -2.1 -1.4 Universal stress protein UspA and related nucleotide-binding proteins compare
EX28DRAFT_0322 -2.0 -8.4 NADH-quinone oxidoreductase, B subunit compare
EX28DRAFT_0167 -2.0 -2.5 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
EX28DRAFT_2268 -2.0 -7.4 succinate dehydrogenase subunit A (EC 1.3.5.1) compare
EX28DRAFT_2425 -2.0 -1.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3879 -2.0 -4.2 Glycosyltransferase compare
EX28DRAFT_0325 -2.0 -5.2 NADH-quinone oxidoreductase, F subunit compare
EX28DRAFT_0922 -2.0 -3.3 TonB family C-terminal domain compare
EX28DRAFT_4475 -1.9 -4.9 Adenylate cyclase compare
EX28DRAFT_4341 -1.9 -3.9 Protein-disulfide isomerase compare
EX28DRAFT_4153 -1.9 -2.7 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_2046 -1.9 -2.2 thiol reductant ABC exporter, CydC subunit compare
EX28DRAFT_2250 -1.8 -1.8 peptidoglycan-associated lipoprotein compare
EX28DRAFT_0046 -1.8 -2.4 shikimate dehydrogenase compare
EX28DRAFT_0333 -1.8 -6.7 proton-translocating NADH-quinone oxidoreductase, chain M compare
EX28DRAFT_2045 -1.8 -1.0 thiol reductant ABC exporter, CydD subunit compare
EX28DRAFT_3647 -1.7 -3.7 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_4271 -1.7 -1.2 glycerol-3-phosphate acyltransferase (EC 2.3.1.15) compare
EX28DRAFT_0332 -1.7 -9.4 proton-translocating NADH-quinone oxidoreductase, chain L compare
EX28DRAFT_0334 -1.7 -2.4 proton-translocating NADH-quinone oxidoreductase, chain N compare
EX28DRAFT_2263 -1.7 -5.0 succinyl-CoA synthetase, alpha subunit compare
EX28DRAFT_0286 -1.7 -2.0 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_0327 -1.6 -5.8 NADH-quinone oxidoreductase, chain G compare
EX28DRAFT_0291 -1.6 -3.9 Uncharacterized membrane protein, required for colicin V production compare
EX28DRAFT_0330 -1.6 -3.6 NADH:ubiquinone oxidoreductase subunit 6 (chain J) compare
EX28DRAFT_0531 -1.5 -6.2 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_1596 -1.5 -1.1 Protein of unknown function (DUF1019) compare
EX28DRAFT_0972 -1.5 -1.5 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_4507 -1.5 -4.1 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
EX28DRAFT_1609 -1.5 -8.9 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region/hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region compare
EX28DRAFT_2258 -1.4 -2.2 cytochrome d oxidase, subunit II (cydB) compare
EX28DRAFT_3675 -1.4 -8.5 transcriptional regulator, LacI family compare
EX28DRAFT_2008 -1.4 -5.2 Aspartate/tyrosine/aromatic aminotransferase compare
EX28DRAFT_3883 -1.4 -2.7 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_3314 -1.4 -0.9 Factor for inversion stimulation Fis, transcriptional activator compare
EX28DRAFT_2371 -1.4 -2.5 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase compare
EX28DRAFT_0712 -1.4 -1.7 DNA polymerase III, theta subunit compare
EX28DRAFT_2531 -1.4 -2.5 endopeptidase La compare
EX28DRAFT_0038 -1.4 -1.3 K+ transport systems, NAD-binding component compare
EX28DRAFT_2540 -1.3 -4.0 cytochrome o ubiquinol oxidase, subunit I compare
EX28DRAFT_2948 -1.3 -4.6 Uncharacterized conserved protein compare
EX28DRAFT_2958 -1.3 -1.3 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_4123 -1.2 -2.6 transcriptional regulator, DeoR family compare
EX28DRAFT_0861 -1.2 -4.7 Response regulator receiver domain compare
EX28DRAFT_0132 -1.2 -2.9 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_0129 -1.2 -1.0 RNA compare
EX28DRAFT_0545 -1.2 -1.9 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_4042 -1.2 -1.7 Protein of unknown function (DUF2629) compare
EX28DRAFT_1719 -1.1 -1.1 integration host factor, alpha subunit compare
EX28DRAFT_0272 -1.1 -2.0 phosphohistidine phosphatase, SixA compare
EX28DRAFT_1328 -1.1 -1.1 Putative excisionase (DUF1233) compare
EX28DRAFT_2541 -1.1 -1.3 cytochrome o ubiquinol oxidase, subunit III compare
EX28DRAFT_2548 -1.1 -2.7 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_1128 -1.1 -1.1 hypothetical protein compare
EX28DRAFT_0329 -1.1 -5.4 NADH-quinone oxidoreductase, chain I compare
EX28DRAFT_1841 -1.1 -0.9 Predicted metal-binding, possibly nucleic acid-binding protein compare
EX28DRAFT_3958 -1.1 -1.8 hypothetical protein compare
EX28DRAFT_1050 -1.1 -3.6 luciferase family oxidoreductase, group 1 compare
EX28DRAFT_0593 -1.0 -7.9 DNA-methyltransferase (dcm) compare
EX28DRAFT_2075 -1.0 -2.8 type II secretion system protein H compare
EX28DRAFT_0948 -1.0 -1.3 hypothetical protein compare
EX28DRAFT_4386 -1.0 -2.3 Signal transduction histidine kinase compare
EX28DRAFT_0081 -1.0 -4.5 DNA replication and repair protein RecO compare
EX28DRAFT_1650 -1.0 -1.5 ribonuclease T compare
EX28DRAFT_1031 -1.0 -1.4 Protein of unknown function (DUF2566) compare
EX28DRAFT_0076 -1.0 -3.2 elongation factor 4 compare
EX28DRAFT_0313 -1.0 -3.1 acetate kinase compare
EX28DRAFT_0312 -1.0 -1.8 phosphate acetyltransferase compare
EX28DRAFT_1839 -1.0 -4.1 phosphate:acyl-[acyl carrier protein] acyltransferase compare
EX28DRAFT_4482 -1.0 -1.8 ATP-dependent DNA helicase UvrD (EC 3.6.1.-) compare
EX28DRAFT_0494 -0.9 -0.6 Protein-tyrosine-phosphatase compare
EX28DRAFT_4405 -0.9 -0.6 ATP-dependent protease HslVU, peptidase subunit compare
EX28DRAFT_4158 -0.9 -3.5 tryptophanyl-tRNA synthetase (EC 6.1.1.2) compare
EX28DRAFT_2724 -0.9 -1.1 RNA compare
EX28DRAFT_0001 -0.9 -1.7 Elongation factor Tu domain 2/Elongation factor Tu C-terminal domain compare
EX28DRAFT_3089 -0.9 -0.8 Transcriptional regulators compare
EX28DRAFT_2424 -0.9 -3.2 transcriptional regulator, TetR family compare
EX28DRAFT_3449 -0.9 -1.7 Predicted membrane protein compare
EX28DRAFT_4350 -0.9 -0.9 nitrogen regulation protein NR(I) compare
EX28DRAFT_2974 -0.9 -4.2 transketolase, bacterial and yeast compare
EX28DRAFT_4515 -0.9 -0.8 hypothetical protein compare
EX28DRAFT_3645 -0.9 -2.2 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_4300 -0.9 -1.4 Predicted membrane protein compare
EX28DRAFT_2532 -0.9 -3.2 RNA compare
EX28DRAFT_4425 -0.9 -4.7 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
EX28DRAFT_1620 -0.9 -1.1 hypothetical protein compare
EX28DRAFT_0528 -0.9 -1.5 Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase compare
EX28DRAFT_0901 -0.8 -1.3 hypothetical protein compare
EX28DRAFT_2214 -0.8 -1.4 malonyl-acyl carrier protein O-methyltransferase BioC compare
EX28DRAFT_1438 -0.8 -1.3 Transcriptional regulators compare
EX28DRAFT_2118 -0.8 -1.7 arsenate reductase (glutaredoxin) compare
EX28DRAFT_2867 -0.8 -3.7 glycerate kinase compare
EX28DRAFT_4184 -0.8 -0.5 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0783 -0.8 -3.1 ABC-type phosphate/phosphonate transport system, periplasmic component compare
EX28DRAFT_2185 -0.8 -1.8 transcriptional regulator, TraR/DksA family compare
EX28DRAFT_2996 -0.8 -1.1 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2282 -0.8 -1.6 K+-transporting ATPase, C subunit compare
EX28DRAFT_2641 -0.8 -1.3 Ash protein family compare
EX28DRAFT_3434 -0.8 -1.5 addiction module antitoxin, RelB/DinJ family compare
EX28DRAFT_2485 -0.8 -2.8 DNA replication and repair protein RecR compare
EX28DRAFT_3616 -0.8 -3.0 threonine synthase compare
EX28DRAFT_2973 -0.8 -4.3 erythrose-4-phosphate dehydrogenase compare
EX28DRAFT_4156 -0.8 -1.1 ribulose-phosphate 3-epimerase compare
EX28DRAFT_1888 -0.7 -1.9 Curlin associated repeat compare
EX28DRAFT_4461 -0.7 -2.2 4-alpha-L-fucosyltransferase glycosyl transferase group 56 compare
EX28DRAFT_1500 -0.7 -1.4 Predicted transcriptional regulators compare
EX28DRAFT_2813 -0.7 -1.5 Formate hydrogenlyase subunit 4 compare
EX28DRAFT_0706 -0.7 -1.4 Entner-Doudoroff aldolase compare
EX28DRAFT_0166 -0.7 -4.0 polyphosphate kinase 1 compare
EX28DRAFT_0277 -0.7 -1.2 Predicted permeases compare
EX28DRAFT_3614 -0.7 -4.2 aspartate kinase (EC 2.7.2.4) compare
EX28DRAFT_0214 -0.7 -2.8 cysteine synthase A compare
EX28DRAFT_4348 -0.7 -1.4 oxygen-independent coproporphyrinogen III oxidase compare
EX28DRAFT_2957 -0.7 -1.7 glycine cleavage system T protein compare
EX28DRAFT_3252 -0.7 -1.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family compare
EX28DRAFT_0977 -0.7 -1.1 phage shock protein B compare
EX28DRAFT_3002 -0.7 -1.3 triphosphoribosyl-dephospho-CoA synthase CitG compare
EX28DRAFT_0434 -0.7 -0.9 hypothetical protein compare
EX28DRAFT_1039 -0.7 -1.2 Sortase and related acyltransferases compare
EX28DRAFT_3583 -0.7 -2.2 peptide chain release factor 3 compare
EX28DRAFT_2774 -0.7 -3.2 glutamate-cysteine ligase (EC 6.3.2.2) compare
EX28DRAFT_2955 -0.7 -5.0 glycine dehydrogenase (decarboxylating) compare
EX28DRAFT_1941 -0.7 -1.0 Protein of unknown function (DUF4089) compare
EX28DRAFT_2492 -0.7 -1.3 Protein of unknown function (DUF2496) compare
EX28DRAFT_1493 -0.7 -2.3 Transcriptional regulator/sugar kinase compare
EX28DRAFT_2539 -0.7 -2.6 cytochrome o ubiquinol oxidase subunit II compare
EX28DRAFT_0285 -0.7 -2.1 Aspartate-semialdehyde dehydrogenase compare
EX28DRAFT_0991 -0.7 -3.2 transcriptional regulator, LacI family compare
EX28DRAFT_1158 -0.7 -2.4 Predicted transcription regulator, contains HTH domain (MarR family) compare
EX28DRAFT_1024 -0.7 -1.1 hypothetical protein compare
EX28DRAFT_0623 -0.7 -1.7 Bacterial flagellin N-terminal helical region/Bacterial flagellin C-terminal helical region compare
EX28DRAFT_0926 -0.7 -0.9 Predicted Fe-S-cluster oxidoreductase compare
EX28DRAFT_1059 -0.7 -1.4 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog compare
EX28DRAFT_4436 -0.6 -2.7 Transcriptional regulator compare
EX28DRAFT_3264 -0.6 -3.5 PAS domain S-box compare
EX28DRAFT_3544 -0.6 -1.9 5-carboxymethyl-2-hydroxymuconate isomerase compare
EX28DRAFT_3487 -0.6 -2.1 hypothetical protein compare
EX28DRAFT_1069 -0.6 -2.8 transcriptional regulator, TetR family compare
EX28DRAFT_1932 -0.6 -1.8 Mg/Co/Ni transporter MgtE (contains CBS domain) compare
EX28DRAFT_4099 -0.6 -2.1 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases compare
EX28DRAFT_2565 -0.6 -3.8 tRNA-guanine transglycosylase compare
EX28DRAFT_4121 -0.6 -2.2 Rhodanese-related sulfurtransferase compare
EX28DRAFT_0374 -0.6 -1.0 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4061 -0.6 -2.7 NADPH-glutathione reductase (EC 1.8.1.7) compare
EX28DRAFT_3377 -0.6 -1.3 rRNA methylase, putative, group 3 compare
EX28DRAFT_2491 -0.6 -1.5 restart primosome assembly protein PriC compare
EX28DRAFT_3185 -0.6 -1.5 transcriptional regulator, DeoR family compare
EX28DRAFT_1679 -0.6 -1.8 pyruvate kinase compare
EX28DRAFT_3966 -0.6 -3.8 D-serine ammonia-lyase (EC 4.3.1.18) compare
EX28DRAFT_1784 -0.6 -2.1 hypothetical protein compare
EX28DRAFT_0058 -0.6 -2.1 23S compare
EX28DRAFT_0484 -0.6 -1.5 RND family efflux transporter, MFP subunit compare
EX28DRAFT_3426 -0.6 -0.7 conserved hypothetical protein EF_0831/AHA_3912 compare
EX28DRAFT_0577 -0.6 -2.7 Arabinose efflux permease compare
EX28DRAFT_3103 -0.6 -2.6 G/U mismatch-specific uracil-DNA glycosylase (EC 3.2.2.-) compare
EX28DRAFT_3566 -0.6 -0.8 Uncharacterized conserved protein compare
EX28DRAFT_0940 -0.6 -1.3 pseudouridine synthase compare
EX28DRAFT_4191 -0.6 -1.5 small GTP-binding protein domain compare
EX28DRAFT_1915 -0.6 -2.1 pyrimidine utilization protein B compare
EX28DRAFT_3058 -0.6 -1.6 Signal transduction histidine kinase compare
EX28DRAFT_4513 -0.6 -3.8 Trk-type K+ transport systems, membrane components compare
EX28DRAFT_4229 -0.6 -1.5 Hok/gef family compare
EX28DRAFT_2509 -0.6 -1.5 transcriptional regulator, LacI family compare
EX28DRAFT_3708 -0.6 -0.8 Transcriptional regulators compare
EX28DRAFT_3540 -0.6 -1.4 4-hydroxyphenylacetate catabolism regulatory protein HpaA compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in stress experiments

For stress casamino acids across organisms