Experiment set1IT056 for Caulobacter crescentus NA1000 Δfur

Compare to:

PYE with CHIR-090 4 ug/mL

200 most important genes:

  gene name fitness t score description  
CCNA_02962 -4.7 -1.7 HicB-family RNAse H fold protein compare
CCNA_00293 -4.2 -2.9 phosphate transport system permease protein pstA compare
CCNA_03337 -4.2 -2.9 peptidoglycan-associated lipoprotein pal compare
CCNA_01496 -3.7 -2.2 2-dehydro-3-deoxyphosphooctonate aldolase compare
CCNA_01802 -3.6 -1.3 hypothetical protein compare
CCNA_03336 -3.4 -6.1 Tol system periplasmic component YbgF compare
CCNA_00239 -3.2 -1.8 serine kinase/phosphatase HprK compare
CCNA_01212 -3.1 -16.6 dATP pyrophosphohydrolase compare
CCNA_00294 -3.1 -3.0 phosphate transport ATP-binding protein pstB compare
CCNA_01211 -3.1 -5.6 MobA-like NTP transferase domain protein compare
CCNA_03944 -3.1 -2.2 hypothetical protein compare
CCNA_01222 -3.0 -10.6 NADH-ubiquinone oxidoreductase compare
CCNA_01220 -2.9 -12.4 7-keto-8-aminopelargonate synthetase compare
CCNA_01217 -2.9 -16.8 phosphatidylglycerophosphate synthase compare
CCNA_01223 -2.9 -15.6 acyl-CoA synthetase compare
CCNA_02387 -2.8 -1.6 glutathione reductase compare
CCNA_01538 -2.7 -1.9 pyruvate phosphate dikinase compare
CCNA_01218 -2.7 -12.6 sphingosine kinase/diacylglycerol kinase-related protein compare
CCNA_03755 -2.7 -7.2 bifunctional D-glycero-D-manno-heptose-7-phosphate 1-kinase/D-glycero-D-manno-heptose-1-phosphate adenylyltransferase compare
CCNA_03859 -2.7 -3.2 two-component response regulator cenR compare
CCNA_01676 -2.7 -1.8 hypothetical protein compare
CCNA_01213 -2.7 -6.1 YjgP/YjgQ family membrane permease compare
CCNA_02329 -2.6 -1.8 exodeoxyribonuclease VII large subunit compare
CCNA_03072 -2.6 -2.5 TetR-family transcriptional regulator compare
CCNA_01103 -2.6 -5.7 ADP-heptose--LPS heptosyltransferase compare
CCNA_03835 -2.6 -2.5 3-oxoacyl-(acyl-carrier-protein) synthase compare
CCNA_01279 -2.5 -2.1 inorganic polyphosphate/ATP-NAD kinase compare
CCNA_01224 -2.5 -10.0 O-antigen membrane transport protein compare
CCNA_00306 -2.4 -5.6 lysophospholipid acyltransferase compare
CCNA_01896 -2.4 -2.0 hypothetical protein compare
CCNA_02286 -2.4 -1.2 hypothetical protein compare
CCNA_00273 -2.4 -1.2 peptide deformylase compare
CCNA_03577 -2.3 -2.0 DNA polymerase I compare
CCNA_01214 -2.3 -4.5 YjgP/YjgQ family membrane permease compare
CCNA_01221 -2.3 -4.7 acyl carrier protein compare
CCNA_03277 -2.3 -5.2 glycosyltransferase compare
CCNA_03702 -2.2 -3.0 SSU ribosomal protein S1P compare
CCNA_03683 -2.2 -2.9 maleylpyruvate isomerase compare
CCNA_01210 -2.2 -8.6 nucleotidyltransferase family protein compare
CCNA_00893 -2.1 -3.4 helix-turn-helix DNA-binding protein compare
CCNA_02094 -2.1 -2.9 MviM-like NAD-dependent oxidoreductase compare
CCNA_01556 -2.0 -2.7 LacI-family transcriptional regulator compare
CCNA_01817 -2.0 -5.5 nitrogen assimilation regulatory protein ntrX compare
CCNA_00292 -2.0 -3.9 phosphate transport system permease protein pstC compare
CCNA_00036 -2.0 -3.3 ribosome-binding factor A compare
CCNA_01129 -1.9 -2.9 flagellar biosynthesis protein FliQ compare
CCNA_02572 -1.9 -6.6 adenylosuccinate lyase compare
CCNA_03516 -1.9 -3.1 protoheme IX farnesyltransferase coxE compare
CCNA_01971 -1.9 -2.5 peptidyl-prolyl cis-trans isomerase compare
CCNA_03650 -1.9 -2.7 mannose-1-phosphate guanyltransferase compare
CCNA_02085 -1.8 -4.4 anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase compare
CCNA_00304 -1.8 -2.4 3-deoxy-D-manno-octulosonic-acid transferase compare
CCNA_01219 -1.8 -5.2 putative cytosolic protein compare
CCNA_01060 -1.7 -2.4 type I protein secretion ATP-binding protein RsaD compare
CCNA_02062 -1.7 -4.4 DNA repair protein recN compare
CCNA_03548 -1.7 -6.1 carboxy-terminal processing protease precursor compare
CCNA_00951 -1.6 -4.8 flagellar motor switch protein FliG compare
CCNA_00952 -1.6 -5.0 flagellar assembly protein FlbE/FliH compare
CCNA_03732 -1.6 -4.1 N-acyl-D-glucosamine 2-epimerase compare
CCNA_01275 -1.6 -1.6 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase compare
CCNA_02320 -1.6 -4.3 2'-deoxycytidine 5'-triphosphate deaminase compare
CCNA_01407 -1.6 -3.1 hypothetical protein compare
CCNA_03790 -1.6 -2.0 hypothetical protein compare
CCNA_01784 -1.6 -2.7 hypothetical protein compare
CCNA_03786 -1.5 -3.1 heme chaperone heme-lyase compare
CCNA_03026 -1.5 -4.5 two-component response regulator petR compare
CCNA_02344 -1.5 -1.9 phosphoglycerate mutase compare
CCNA_03358 -1.5 -2.7 glyceraldehyde 3-phosphate dehydrogenase compare
CCNA_00252 -1.5 -8.0 multimodular transpeptidase-transglycosylase PbpX compare
CCNA_02650 -1.5 -3.8 N-acetyl-anhydromuramyl-L-alanine amidase compare
CCNA_00667 -1.5 -6.4 lipopolysaccharide biosynthesis protein compare
CCNA_00128 -1.5 -1.3 argininosuccinate synthase compare
CCNA_02925 -1.5 -3.4 carbamoyl-phosphate synthase small chain compare
CCNA_01988 -1.5 -1.7 UDP-N-acetylglucosamine O-acyltransferase LpxA compare
CCNA_00135 -1.5 -4.8 trypsin-like peptidase compare
CCNA_01226 -1.4 -7.8 hypothetical protein compare
CCNA_01061 -1.4 -3.2 type I secretion adaptor protein RsaE compare
CCNA_03782 -1.4 -1.9 cytochrome c biogenesis ATP-binding export protein CcmA compare
CCNA_01968 -1.4 -1.3 pentapeptide repeats containing protein compare
CCNA_00747 -1.4 -4.7 cyclic-di-GMP phosphodiesterase, flagellum assembly factor TipF compare
CCNA_02075 -1.4 -6.1 peptidoglycan binding endopeptidase DipM compare
CCNA_00670 -1.4 -3.6 ABC-type polysaccharide/polyol phosphate transport system, ATPase component compare
CCNA_03101 -1.4 -2.9 site-specific tyrosine recombinase XerD compare
CCNA_03783 -1.4 -1.2 cytochrome c biogenesis ABC transporter permease component CcmB compare
CCNA_03872 -1.4 -4.9 tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase compare
CCNA_01002 -1.4 -2.4 flagellar biosyntheis protein FliP compare
CCNA_01130 -1.3 -3.7 flagellar biosynthesis protein FliR compare
CCNA_00134 -1.3 -4.5 surface protein compare
CCNA_00956 -1.3 -5.2 flagellar biosynthesis protein FlhA compare
CCNA_01795 -1.3 -2.3 phosphopyruvate hydratase compare
CCNA_02390 -1.3 -2.9 phosphoglycolate phosphatase compare
CCNA_01131 -1.3 -4.2 flagellar biosynthesis protein FlhB compare
CCNA_03788 -1.2 -2.6 thiol:disulfide interchange protein tlpA compare
CCNA_01430 -1.2 -2.4 hypothetical protein compare
CCNA_01474 -1.2 -3.7 cytochrome cbb3 oxidase maturation protein ccoS compare
CCNA_00572 -1.2 -1.7 PTS system, N-acetylglucosamine-specific IIBC component compare
CCNA_03871 -1.2 -1.7 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
CCNA_01638 -1.2 -5.3 beta-lactamase family protein compare
CCNA_03726 -1.2 -4.5 3-amino-5-hydroxybenzoic acid synthase family compare
CCNA_00349 -1.2 -1.9 integrase/recombinase, XerC-CodV family compare
CCNA_02664 -1.2 -1.5 flagellar assembly regulator FliX compare
CCNA_01964 -1.2 -1.1 NADH dehydrogenase compare
CCNA_00225 -1.2 -1.1 hypothetical protein compare
CCNA_01003 -1.1 -4.0 flagellar biosynthesis protein FliO compare
CCNA_03201 -1.1 -7.5 adenylosuccinate synthetase compare
CCNA_03052 -1.1 -2.6 acyltransferase compare
CCNA_03651 -1.1 -2.6 ATP-dependent nuclease subunit B compare
CCNA_03135 -1.1 -3.9 flagellum-specific ATP synthase fliL compare
CCNA_03931 -1.1 -0.6 hypothetical protein compare
CCNA_00976 -1.1 -1.9 signal peptide peptidase A compare
CCNA_02468 -1.1 -2.9 hypothetical protein compare
CCNA_03652 -1.1 -3.9 ATP-dependent nuclease subunit A compare
CCNA_02333 -1.0 -1.8 lipid A biosynthesis lauroyl acyltransferase compare
CCNA_01873 -1.0 -2.0 magnesium and cobalt transport protein corA compare
CCNA_03878 -1.0 -1.9 ferrochelatase compare
CCNA_01785 -1.0 -3.8 hypothetical protein compare
CCNA_03959 -1.0 -1.1 hypothetical protein compare
CCNA_03464 -1.0 -2.3 glycine cleavage system H protein compare
CCNA_03609 -1.0 -4.8 outer membrane protein compare
CCNA_00953 -1.0 -1.4 flagellar motor switch protein FliN compare
CCNA_01939 -1.0 -1.7 ADP-ribosylglycohydrolase compare
CCNA_03273 -1.0 -4.8 hypothetical protein compare
CCNA_00296 -0.9 -5.8 phosphate regulon response regulator PhoB compare
CCNA_00379 -0.9 -1.3 thiol:disulfide interchange protein dsbA compare
CCNA_00708 -0.9 -1.8 cobaltochelatase cobT subunit compare
CCNA_00950 -0.9 -4.8 flagellar M-ring protein FliF compare
CCNA_01876 -0.9 -5.1 oxidoreductase compare
CCNA_02934 -0.9 -4.5 hypothetical protein compare
CCNA_02645 -0.9 -1.3 S-adenosyl-methyltransferase MraW compare
CCNA_02849 -0.9 -1.1 cytochrome c-type biogenesis heme chaperone compare
CCNA_02847 -0.9 -2.7 cytochrome c-type biogenesis protein ccmH compare
CCNA_03354 -0.9 -3.3 5-formyltetrahydrofolate cyclo-ligase compare
CCNA_03136 -0.9 -2.4 flagellar export protein FliJ compare
CCNA_00512 -0.9 -3.5 GTP-binding protein, probable translation factor compare
CCNA_03487 -0.9 -2.3 zonular occludens toxin, zot-like protein compare
CCNA_00257 -0.9 -4.6 adenosylhomocysteinase compare
CCNA_02449 -0.9 -3.4 hypothetical protein compare
CCNA_00240 -0.9 -1.3 PTS system, IIA component compare
CCNA_R0010 -0.9 -3.6 tRNA-Arg compare
CCNA_03960 -0.9 -0.8 hypothetical protein compare
CCNA_01692 -0.9 -1.4 GMP synthase GuaA compare
CCNA_00264 -0.8 -3.5 C4-dicarboxylate transport protein compare
CCNA_02848 -0.8 -2.0 heme chaperone-apocytochrome heme-lyase compare
CCNA_01732 -0.8 -1.5 DNA repair protein RadA compare
CCNA_01120 -0.8 -2.2 hypothetical protein compare
CCNA_03401 -0.8 -1.8 conserved hypothetical cytosolic protein compare
CCNA_00057 -0.8 -0.8 glycoprotease family protein compare
CCNA_02380 -0.8 -1.8 aspartate 1-decarboxylase compare
CCNA_01726 -0.8 -1.0 EngA-subfamily GTPase protein compare
CCNA_01467 -0.8 -5.3 cytochrome cbb3 oxidase subunit I ccoN compare
CCNA_00197 -0.8 -1.3 LSU ribosomal protein L19P compare
CCNA_02704 -0.8 -1.8 NADP-dependent malic enzyme compare
CCNA_02478 -0.8 -4.7 dihydrolipoamide acetyltransferase component of acetoin cleaving system compare
CCNA_03987 -0.8 -2.0 hypothetical protein compare
CCNA_03649 -0.8 -4.0 Ser/Thr kinase-related phosphotransferase compare
CCNA_01868 -0.8 -3.6 2H phosphodiesterase family protein compare
CCNA_00011 -0.8 -2.0 chaperone protein DnaJ compare
CCNA_03767 -0.8 -0.7 SSU ribosomal protein S16P compare
CCNA_01907 -0.8 -4.2 ABC transporter ATP-binding protein compare
CCNA_00063 -0.8 -0.6 MviN-family integral membrane protein compare
CCNA_02115 -0.8 -4.5 secreted pectate lyase-family protein compare
CCNA_01955 -0.8 -4.0 zinc metalloprotease compare
CCNA_03657 -0.8 -1.7 tryptophan synthase alpha chain compare
CCNA_03329 -0.7 -0.9 hypothetical protein compare
CCNA_01461 -0.7 -4.3 hypothetical protein compare
CCNA_01844 -0.7 -2.6 DNA integration/recombination/inversion protein compare
CCNA_02487 -0.7 -4.5 4-hydroxybenzoate 3-monooxygenase compare
CCNA_00502 -0.7 -2.6 glycosyl transferase family protein compare
CCNA_02346 -0.7 -1.9 arabinose-5-phosphate isomerase compare
CCNA_00802 -0.7 -1.6 cyd operon protein YbgT compare
CCNA_R0075 -0.7 -1.0 tRNA-Met compare
CCNA_03274 -0.7 -0.7 hypothetical protein compare
CCNA_03975 -0.7 -0.5 hypothetical protein compare
CCNA_01910 -0.7 -2.4 ABC transporter substrate-binding protein compare
CCNA_02250 -0.7 -3.3 methylcrotonyl-CoA carboxylase biotin-containing subunit compare
CCNA_02994 -0.7 -2.7 carbamoyl-phosphate synthase large chain compare
CCNA_02532 -0.7 -2.0 hypothetical protein compare
CCNA_R0047 -0.7 -1.1 tRNA-Val compare
CCNA_01118 -0.7 -0.7 hypothetical protein compare
CCNA_00519 -0.7 -3.4 hypothetical protein compare
CCNA_01837 -0.7 -4.0 transposase, IS30 family compare
CCNA_01085 -0.7 -2.2 DNA-cytosine methyltransferase compare
CCNA_03013 -0.7 -2.7 alkyl hydroperoxide reductase subunit F compare
CCNA_02648 -0.7 -3.6 alpha/beta hydrolase family protein compare
CCNA_02521 -0.7 -0.6 endonuclease involved in recombination compare
CCNA_01475 -0.7 -2.9 OmpW family outer membrane cation channel compare
CCNA_01497 -0.7 -2.5 ADP-L-glycero-D-manno-heptose-6-epimerase compare
CCNA_01123 -0.7 -3.6 peptide chain release factor RF-3 compare
CCNA_01216 -0.7 -4.8 phosphohydrolase, Icc family compare
CCNA_02161 -0.6 -2.4 TetR-family transcriptional regulator compare
CCNA_00315 -0.6 -2.6 3-polyprenyl-4-hydroxybenzoate decarboxylase compare
CCNA_03895 -0.6 -2.9 hypothetical protein compare
CCNA_01476 -0.6 -3.6 CRP-family transcription regulator FtrB compare
CCNA_02499 -0.6 -1.9 type IV secretory pathway, VirB2 protein compare
CCNA_01883 -0.6 -3.8 acyl-CoA dehydrogenase compare
CCNA_03861 -0.6 -1.8 pyridoxal 5'-phosphate dependent enzyme class III compare
CCNA_03883 -0.6 -2.6 hypothetical protein compare
CCNA_03953 -0.6 -2.4 hypothetical protein compare
CCNA_01367 -0.6 -2.2 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
CCNA_02489 -0.6 -3.7 acetate/3-ketoacid CoA transferase, subunit B compare


Specific Phenotypes

None in this experiment

For Caulobacter crescentus NA1000 Δfur in stress experiments

For stress CHIR-090 across organisms