Experiment set1IT055 for Variovorax sp. OAS795

Compare to:

D-Galactose carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS21215 -7.4 -7.3 2-dehydro-3-deoxy-6-phosphogalactonate aldolase conserved
ABID97_RS16595 -7.0 -6.5 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS21205 -6.9 -8.2 IlvD/Edd family dehydratase compare
ABID97_RS21210 -6.6 -5.7 2-dehydro-3-deoxygalactonokinase conserved
ABID97_RS23225 -6.5 -11.7 glutamate synthase-related protein compare
ABID97_RS15375 -6.4 -6.9 DUF934 domain-containing protein compare
ABID97_RS16600 -6.1 -8.4 CysB family HTH-type transcriptional regulator compare
ABID97_RS15380 -5.8 -12.3 nitrite/sulfite reductase compare
ABID97_RS20615 -5.4 -7.2 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS08220 -5.4 -12.0 phosphoenolpyruvate carboxylase compare
ABID97_RS23230 -5.2 -16.0 transposase compare
ABID97_RS01565 -5.0 -12.7 DNA starvation/stationary phase protection protein compare
ABID97_RS08425 -4.9 -3.4 tryptophan synthase subunit alpha compare
ABID97_RS05260 -4.9 -2.0 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS10885 -4.8 -5.8 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS14095 -4.8 -12.0 PAS domain S-box protein compare
ABID97_RS05250 -4.4 -8.0 anthranilate synthase component I compare
ABID97_RS25015 -4.2 -2.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS13990 -4.2 -2.9 amino acid aminotransferase compare
ABID97_RS06850 -4.1 -4.4 multiple monosaccharide ABC transporter permease conserved
ABID97_RS06345 -4.0 -2.7 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS09180 -4.0 -5.4 DNA polymerase I compare
ABID97_RS06575 -4.0 -7.3 trehalose-phosphatase compare
ABID97_RS16535 -3.9 -9.1 arginine/lysine/ornithine decarboxylase compare
ABID97_RS07430 -3.8 -12.2 pantoate--beta-alanine ligase compare
ABID97_RS07775 -3.8 -4.4 phosphoribosylglycinamide formyltransferase compare
ABID97_RS02600 -3.7 -3.6 homoserine O-acetyltransferase compare
ABID97_RS14100 -3.7 -12.0 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABID97_RS15370 -3.6 -10.3 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS23220 -3.6 -1.9 glutamate synthase subunit beta compare
ABID97_RS06840 -3.6 -5.9 multiple monosaccharide ABC transporter substrate-binding protein conserved
ABID97_RS05275 -3.5 -2.4 anthranilate phosphoribosyltransferase compare
ABID97_RS07000 -3.4 -11.5 threonine ammonia-lyase, biosynthetic compare
ABID97_RS23425 -3.4 -3.3 tRNA-Pro compare
ABID97_RS07435 -3.3 -11.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS14090 -3.3 -1.9 response regulator transcription factor compare
ABID97_RS15360 -3.3 -8.9 GTP-binding protein compare
ABID97_RS04505 -3.2 -3.1 ferric iron uptake transcriptional regulator compare
ABID97_RS13860 -3.2 -8.3 hypothetical protein compare
ABID97_RS14105 -3.0 -3.4 dihydrolipoyllysine-residue acetyltransferase compare
ABID97_RS12180 -2.9 -2.8 hypothetical protein compare
ABID97_RS15465 -2.9 -12.6 sulfate ABC transporter substrate-binding protein compare
ABID97_RS05280 -2.9 -2.0 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS23455 -2.9 -4.3 hypothetical protein compare
ABID97_RS03910 -2.8 -1.9 orotate phosphoribosyltransferase compare
ABID97_RS08435 -2.8 -1.9 phosphoribosylanthranilate isomerase compare
ABID97_RS05765 -2.8 -1.9 UDP-glucose 4-epimerase GalE compare
ABID97_RS06815 -2.7 -9.3 SMP-30/gluconolactonase/LRE family protein conserved
ABID97_RS16470 -2.7 -1.8 translational GTPase TypA compare
ABID97_RS15665 -2.7 -9.1 [protein-PII] uridylyltransferase compare
ABID97_RS06460 -2.6 -1.8 sigma 54-interacting transcriptional regulator compare
ABID97_RS23450 -2.6 -5.5 MBOAT family protein compare
ABID97_RS14115 -2.6 -6.1 dihydrolipoyl dehydrogenase compare
ABID97_RS03800 -2.5 -2.9 O-antigen ligase family protein compare
ABID97_RS06450 -2.5 -2.4 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS21150 -2.5 -8.8 FAD-dependent oxidoreductase compare
ABID97_RS15490 -2.4 -7.4 FMNH2-dependent alkanesulfonate monooxygenase compare
ABID97_RS27365 -2.4 -1.4 nitrogen assimilation transcriptional regulator NAC compare
ABID97_RS15365 -2.4 -6.1 sulfate adenylyltransferase subunit CysD compare
ABID97_RS06825 -2.4 -3.2 LysR family transcriptional regulator compare
ABID97_RS05370 -2.4 -6.0 ATP-binding protein compare
ABID97_RS03640 -2.3 -7.1 SMP-30/gluconolactonase/LRE family protein compare
ABID97_RS05755 -2.3 -2.7 glycosyltransferase compare
ABID97_RS07405 -2.3 -12.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS07415 -2.3 -13.1 quinolinate synthase NadA compare
ABID97_RS08775 -2.3 -2.6 ribosome small subunit-dependent GTPase A compare
ABID97_RS21300 -2.2 -3.6 phosphogluconate dehydratase compare
ABID97_RS06820 -2.2 -6.6 SDR family oxidoreductase conserved
ABID97_RS06275 -2.2 -2.1 crossover junction endodeoxyribonuclease RuvC compare
ABID97_RS19955 -2.2 -1.5 glycerol-3-phosphate dehydrogenase compare
ABID97_RS05365 -2.2 -4.5 DUF4390 domain-containing protein compare
ABID97_RS04500 -2.2 -2.0 HPr(Ser) kinase/phosphatase compare
ABID97_RS08480 -2.1 -1.4 citrate synthase compare
ABID97_RS28990 -2.1 -7.0 aspartate 1-decarboxylase compare
ABID97_RS08430 -2.0 -1.4 tryptophan synthase subunit beta compare
ABID97_RS00255 -2.0 -11.2 type IV pilus twitching motility protein PilT compare
ABID97_RS28245 -2.0 -1.5 SDR family NAD(P)-dependent oxidoreductase compare
ABID97_RS06845 -2.0 -3.8 multiple monosaccharide ABC transporter ATP-binding protein compare
ABID97_RS05750 -2.0 -3.1 glycosyltransferase compare
ABID97_RS17600 -2.0 -2.6 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABID97_RS07410 -2.0 -6.9 carboxylating nicotinate-nucleotide diphosphorylase compare
ABID97_RS17225 -2.0 -10.6 polyhydroxyalkanoate synthesis repressor PhaR compare
ABID97_RS02110 -1.9 -13.2 type IV pilus modification protein PilV compare
ABID97_RS10295 -1.9 -1.9 winged helix-turn-helix transcriptional regulator compare
ABID97_RS17590 -1.9 -10.0 endopeptidase La compare
ABID97_RS17970 -1.9 -5.3 protein TolQ compare
ABID97_RS02120 -1.9 -10.7 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS02125 -1.9 -15.7 PilC/PilY family type IV pilus protein compare
ABID97_RS16705 -1.8 -10.7 ribonuclease G compare
ABID97_RS01650 -1.8 -1.2 orotidine-5'-phosphate decarboxylase compare
ABID97_RS08445 -1.8 -8.2 FimV/HubP family polar landmark protein compare
ABID97_RS03680 -1.8 -6.4 lysophospholipid transporter LplT compare
ABID97_RS06520 -1.8 -1.7 SAM-dependent methyltransferase compare
ABID97_RS11960 -1.8 -1.7 hypothetical protein compare
ABID97_RS15470 -1.7 -2.6 NADPH-dependent FMN reductase compare
ABID97_RS20020 -1.7 -2.9 LacI family DNA-binding transcriptional regulator compare
ABID97_RS23430 -1.7 -10.6 type IV-A pilus assembly ATPase PilB compare
ABID97_RS02115 -1.7 -8.9 PilW family protein compare
ABID97_RS18205 -1.7 -3.6 XRE family transcriptional regulator compare
ABID97_RS02135 -1.7 -6.7 GspH/FimT family pseudopilin compare
ABID97_RS05670 -1.7 -1.9 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS23440 -1.7 -8.7 A24 family peptidase compare
ABID97_RS09935 -1.6 -9.9 hypothetical protein compare
ABID97_RS02455 -1.6 -4.3 nucleotidyltransferase family protein compare
ABID97_RS27900 -1.6 -2.1 DUF4242 domain-containing protein compare
ABID97_RS14160 -1.6 -5.0 cell division protein ZapE compare
ABID97_RS23435 -1.6 -10.6 type II secretion system F family protein compare
ABID97_RS24170 -1.6 -3.9 ATP-binding protein compare
ABID97_RS17635 -1.5 -3.4 presqualene diphosphate synthase HpnD compare
ABID97_RS15480 -1.5 -4.5 sulfonate ABC transporter substrate-binding protein compare
ABID97_RS02130 -1.5 -9.7 type IV pilin protein compare
ABID97_RS14665 -1.5 -3.1 UvrD-helicase domain-containing protein compare
ABID97_RS08710 -1.4 -5.4 polynucleotide adenylyltransferase PcnB compare
ABID97_RS03805 -1.4 -1.0 ATP-binding protein compare
ABID97_RS23270 -1.4 -7.7 pilus assembly protein PilP compare
ABID97_RS24370 -1.4 -2.2 DUF1841 family protein compare
ABID97_RS01825 -1.4 -10.1 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS06060 -1.4 -1.5 hypothetical protein compare
ABID97_RS03915 -1.4 -5.3 DUF4124 domain-containing protein compare
ABID97_RS06175 -1.4 -10.6 STAS domain-containing protein compare
ABID97_RS06860 -1.4 -4.6 ABC transporter permease compare
ABID97_RS24045 -1.4 -3.7 type II toxin-antitoxin system prevent-host-death family antitoxin compare
ABID97_RS16695 -1.4 -9.1 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS15995 -1.3 -4.9 PilZ domain-containing protein compare
ABID97_RS07440 -1.3 -8.1 L-aspartate oxidase compare
ABID97_RS22860 -1.3 -1.3 MurR/RpiR family transcriptional regulator compare
ABID97_RS04610 -1.3 -6.9 potassium transporter Kup compare
ABID97_RS17850 -1.3 -1.2 tetratricopeptide repeat protein compare
ABID97_RS19375 -1.3 -4.6 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
ABID97_RS23915 -1.3 -3.4 heme o synthase compare
ABID97_RS20095 -1.3 -1.9 DNA topoisomerase IV subunit B compare
ABID97_RS24920 -1.3 -1.8 Holliday junction branch migration protein RuvA compare
ABID97_RS07500 -1.3 -2.0 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS08195 -1.3 -6.3 histidine kinase compare
ABID97_RS14975 -1.3 -4.0 hypothetical protein compare
ABID97_RS23650 -1.3 -9.8 serine/threonine-protein kinase compare
ABID97_RS01840 -1.2 -7.9 DUF1631 family protein compare
ABID97_RS22705 -1.2 -6.3 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS09130 -1.2 -1.0 tRNA-Ala compare
ABID97_RS24705 -1.2 -4.6 response regulator compare
ABID97_RS27720 -1.2 -1.5 fumarate reductase/succinate dehydrogenase flavoprotein subunit compare
ABID97_RS15505 -1.2 -1.0 ATP-binding cassette domain-containing protein compare
ABID97_RS02145 -1.2 -7.0 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS04480 -1.2 -2.0 magnesium/cobalt transporter CorA compare
ABID97_RS10720 -1.2 -4.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABID97_RS02140 -1.2 -6.2 sugar transferase compare
ABID97_RS12850 -1.2 -1.6 ribulose bisphosphate carboxylase small subunit compare
ABID97_RS14200 -1.2 -6.0 pseudouridine synthase compare
ABID97_RS02460 -1.2 -9.1 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS12415 -1.2 -8.7 class I poly(R)-hydroxyalkanoic acid synthase compare
ABID97_RS13865 -1.1 -3.3 hypothetical protein compare
ABID97_RS06415 -1.1 -6.7 sigma-54 dependent transcriptional regulator compare
ABID97_RS14625 -1.1 -4.8 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS23265 -1.1 -4.4 type IV pilus secretin PilQ compare
ABID97_RS19220 -1.1 -1.5 DNA polymerase Y family protein compare
ABID97_RS23170 -1.1 -1.6 UDP-N-acetylglucosamine 1-carboxyvinyltransferase compare
ABID97_RS06780 -1.1 -6.2 aldose epimerase family protein conserved
ABID97_RS19025 -1.1 -0.9 tripartite tricarboxylate transporter substrate binding protein compare
ABID97_RS23940 -1.1 -5.8 cytochrome c oxidase subunit 3 compare
ABID97_RS03110 -1.1 -5.4 helix-turn-helix transcriptional regulator compare
ABID97_RS23275 -1.1 -5.9 type 4a pilus biogenesis protein PilO compare
ABID97_RS21945 -1.1 -2.7 hemolysin family protein compare
ABID97_RS25745 -1.1 -1.7 dipeptide ABC transporter ATP-binding protein compare
ABID97_RS04765 -1.1 -1.5 thiol:disulfide interchange protein DsbA/DsbL compare
ABID97_RS24025 -1.1 -1.4 SDR family NAD(P)-dependent oxidoreductase compare
ABID97_RS12460 -1.1 -2.4 acetoacetyl-CoA reductase compare
ABID97_RS25405 -1.1 -6.5 16S ribosomal RNA compare
ABID97_RS02210 -1.1 -6.1 pilin compare
ABID97_RS06160 -1.1 -5.4 GTP-binding protein compare
ABID97_RS28355 -1.0 -1.3 2,5-dihydroxypyridine 5,6-dioxygenase compare
ABID97_RS08250 -1.0 -4.8 RluA family pseudouridine synthase compare
ABID97_RS18255 -1.0 -1.2 hypothetical protein compare
ABID97_RS19065 -1.0 -4.9 GntR family transcriptional regulator compare
ABID97_RS15585 -1.0 -4.3 sulfate ABC transporter ATP-binding protein compare
ABID97_RS23380 -1.0 -6.3 lytic transglycosylase domain-containing protein compare
ABID97_RS01415 -1.0 -2.0 DUF1840 domain-containing protein compare
ABID97_RS06315 -1.0 -7.9 YqiA/YcfP family alpha/beta fold hydrolase compare
ABID97_RS14055 -1.0 -1.3 DUF883 family protein compare
ABID97_RS11920 -1.0 -1.5 DUF1003 domain-containing protein compare
ABID97_RS17200 -1.0 -8.2 ribonuclease R compare
ABID97_RS16690 -1.0 -3.6 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS10705 -1.0 -3.3 H-NS histone family protein compare
ABID97_RS27665 -1.0 -2.2 LysR family transcriptional regulator compare
ABID97_RS06600 -1.0 -3.5 5-formyltetrahydrofolate cyclo-ligase compare
ABID97_RS24040 -1.0 -1.8 MarR family transcriptional regulator compare
ABID97_RS02200 -0.9 -7.8 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABID97_RS09595 -0.9 -0.8 Arc family DNA-binding protein compare
ABID97_RS24690 -0.9 -5.2 methyl-accepting chemotaxis protein compare
ABID97_RS01755 -0.9 -5.6 pyruvate kinase compare
ABID97_RS10815 -0.9 -6.9 phosphoenolpyruvate synthase compare
ABID97_RS10695 -0.9 -4.3 YbhB/YbcL family Raf kinase inhibitor-like protein compare
ABID97_RS28395 -0.9 -1.5 LysR substrate-binding domain-containing protein compare
ABID97_RS10880 -0.9 -2.4 Mth938-like domain-containing protein compare
ABID97_RS25345 -0.9 -4.5 transporter associated domain-containing protein compare
ABID97_RS14925 -0.9 -5.1 arginyltransferase compare
ABID97_RS15495 -0.9 -2.3 aliphatic sulfonate ABC transporter permease SsuC compare
ABID97_RS14505 -0.9 -7.0 hypothetical protein compare
ABID97_RS05125 -0.9 -2.2 DUF2169 domain-containing protein compare
ABID97_RS23280 -0.9 -4.7 PilN domain-containing protein compare
ABID97_RS14890 -0.9 -2.6 acetolactate synthase small subunit compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source D-Galactose in Variovorax sp. OAS795

For carbon source D-Galactose across organisms