Experiment set1IT055 for Magnetospirillum magneticum AMB-1

Compare to:

carbonsource_succinate

200 most important genes:

  gene name fitness t score description  
AMB_RS16340 -3.3 -4.2 penicillin-binding protein 1A compare
AMB_RS04565 -2.3 -10.9 PAS domain-containing sensor histidine kinase compare
AMB_RS13555 -2.0 -11.2 phosphoribulokinase compare
AMB_RS07850 -2.0 -9.6 pyruvate kinase compare
AMB_RS03205 -1.9 -3.3 DNA recombination/repair protein RecA compare
AMB_RS19880 -1.9 -4.8 site-specific tyrosine recombinase XerD compare
AMB_RS11195 -1.8 -2.0 sulfate adenylyltransferase subunit 2 compare
AMB_RS21025 -1.7 -10.6 DUF3422 domain-containing protein compare
AMB_RS09970 -1.6 -1.0 NAD synthetase compare
AMB_RS21385 -1.4 -7.7 helix-turn-helix transcriptional regulator compare
AMB_RS14245 -1.4 -1.0 DUF1849 domain-containing protein compare
AMB_RS22235 -1.4 -3.3 RNase adaptor protein RapZ compare
AMB_RS20350 -1.3 -4.5 aspartate 1-decarboxylase compare
AMB_RS05435 -1.3 -3.2 ABC transporter permease compare
AMB_RS23070 -1.3 -3.8 ferredoxin compare
AMB_RS06370 -1.2 -2.1 DNA-binding response regulator compare
AMB_RS10260 -1.2 -2.3 CBS domain-containing protein compare
AMB_RS00010 -1.1 -2.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
AMB_RS14035 -1.1 -4.8 endopeptidase La compare
AMB_RS21455 -1.1 -4.8 XRE family transcriptional regulator compare
AMB_RS24000 -1.1 -1.2 glycosyltransferase family 1 protein compare
AMB_RS02835 -1.1 -1.8 two-component sensor histidine kinase compare
AMB_RS21050 -1.0 -1.9 CoA pyrophosphatase compare
AMB_RS00355 -1.0 -5.5 radical SAM protein compare
AMB_RS23195 -1.0 -3.2 ABC transporter ATP-binding protein compare
AMB_RS20120 -0.9 -2.7 VOC family protein compare
AMB_RS24680 -0.9 -3.0 hypothetical protein compare
AMB_RS03110 -0.9 -0.9 membrane protein compare
AMB_RS17450 -0.9 -1.5 DUF1987 domain-containing protein compare
AMB_RS14525 -0.9 -0.9 xylanase/chitin deacetylase compare
AMB_RS07555 -0.8 -1.7 DUF1566 domain-containing protein compare
AMB_RS12825 -0.8 -1.9 phosphatidylglycerophosphatase A compare
AMB_RS23950 -0.8 -4.1 hemerythrin compare
AMB_RS09860 -0.8 -1.9 hypothetical protein compare
AMB_RS16700 -0.8 -1.1 nuclease PIN compare
AMB_RS24585 -0.8 -1.7 hypothetical protein compare
AMB_RS07570 -0.8 -1.1 hypothetical protein compare
AMB_RS14270 -0.8 -2.5 response regulator compare
AMB_RS09845 -0.8 -1.8 hypothetical protein compare
AMB_RS01640 -0.8 -4.3 response regulator compare
AMB_RS11470 -0.8 -5.3 homospermidine synthase compare
AMB_RS24715 -0.8 -5.4 hypothetical protein compare
AMB_RS12320 -0.8 -1.5 septal ring lytic transglycosylase RlpA family protein compare
AMB_RS07115 -0.8 -2.1 Lrp/AsnC family transcriptional regulator compare
AMB_RS08580 -0.8 -1.6 hypothetical protein compare
AMB_RS13540 -0.8 -1.0 4Fe-4S dicluster domain-containing protein compare
AMB_RS20770 -0.8 -2.6 TrkH family potassium uptake protein compare
AMB_RS10555 -0.8 -2.9 DNA repair protein RadA compare
AMB_RS22150 -0.8 -1.0 MarR family transcriptional regulator compare
AMB_RS22810 -0.8 -1.0 hypothetical protein compare
AMB_RS19790 -0.8 -2.7 NAD(P)-dependent oxidoreductase compare
AMB_RS01995 -0.7 -1.8 DUF1833 domain-containing protein compare
AMB_RS11780 -0.7 -4.2 glutamate synthase subunit beta compare
AMB_RS16375 -0.7 -2.6 MFS transporter compare
AMB_RS17335 -0.7 -1.1 N-acyl-L-homoserine lactone synthetase compare
AMB_RS02025 -0.7 -1.1 hypothetical protein compare
AMB_RS01760 -0.7 -1.5 hypothetical protein compare
AMB_RS15095 -0.7 -2.2 LamB/YcsF family protein compare
AMB_RS19565 -0.7 -2.6 peptidase M23 compare
AMB_RS18915 -0.7 -1.8 Flp family type IVb pilin compare
AMB_RS17975 -0.7 -2.0 biopolymer transporter ExbD compare
AMB_RS13835 -0.7 -1.7 RidA family protein compare
AMB_RS21725 -0.7 -2.9 hemerythrin compare
AMB_RS06755 -0.7 -1.2 hypothetical protein compare
AMB_RS18380 -0.7 -1.8 methyl-accepting chemotaxis protein compare
AMB_RS18505 -0.7 -1.7 hypothetical protein compare
AMB_RS12395 -0.7 -1.3 succinate dehydrogenase assembly factor 2 compare
AMB_RS17445 -0.6 -1.5 hypothetical protein compare
AMB_RS20665 -0.6 -1.8 class I SAM-dependent methyltransferase compare
AMB_RS03015 -0.6 -2.0 hypothetical protein compare
AMB_RS22375 -0.6 -1.1 hypothetical protein compare
AMB_RS13585 -0.6 -2.7 alpha/beta hydrolase compare
AMB_RS00245 -0.6 -1.9 transcriptional activator RfaH compare
AMB_RS11100 -0.6 -3.1 membrane protein compare
AMB_RS19340 -0.6 -0.8 EamA family transporter compare
AMB_RS01635 -0.6 -1.8 chemotaxis response regulator protein-glutamate methylesterase compare
AMB_RS13710 -0.6 -2.1 hypothetical protein compare
AMB_RS00075 -0.6 -0.5 P-II family nitrogen regulator compare
AMB_RS14175 -0.6 -1.0 COQ9 family protein compare
AMB_RS05680 -0.6 -1.8 anti-sigma factor antagonist compare
AMB_RS07865 -0.6 -2.8 ATP-dependent chaperone ClpB compare
AMB_RS09670 -0.6 -1.8 ATP-binding protein compare
AMB_RS07415 -0.6 -0.6 DUF2946 domain-containing protein compare
AMB_RS21495 -0.6 -1.3 DUF484 domain-containing protein compare
AMB_RS06665 -0.5 -1.8 LrgB family protein compare
AMB_RS05505 -0.5 -2.4 GDP-mannose 4,6-dehydratase compare
AMB_RS03045 -0.5 -0.3 hydrogen peroxide-inducible genes activator compare
AMB_RS09545 -0.5 -2.2 hypothetical protein compare
AMB_RS20870 -0.5 -0.8 gamma-glutamyl-gamma-aminobutyrate hydrolase compare
AMB_RS15295 -0.5 -1.0 iron donor protein CyaY compare
AMB_RS18385 -0.5 -2.3 transcriptional regulator compare
AMB_RS24535 -0.5 -2.2 hypothetical protein compare
AMB_RS20020 -0.5 -0.9 cell division protein ZapE compare
AMB_RS21040 -0.5 -1.3 hypothetical protein compare
AMB_RS12870 -0.5 -3.5 GNAT family N-acetyltransferase compare
AMB_RS14240 -0.5 -1.0 hypothetical protein compare
AMB_RS08155 -0.5 -1.6 DUF4115 domain-containing protein compare
AMB_RS08260 -0.5 -1.7 hypothetical protein compare
AMB_RS04865 -0.5 -1.3 hypothetical protein compare
AMB_RS19160 -0.5 -1.6 methyltransferase domain-containing protein compare
AMB_RS24720 -0.5 -3.8 GGDEF domain-containing protein compare
AMB_RS15315 -0.5 -2.2 DUF1465 domain-containing protein compare
AMB_RS24520 -0.5 -2.6 phosphodiesterase compare
AMB_RS01875 -0.5 -2.1 hypothetical protein compare
AMB_RS02985 -0.5 -1.9 UTP--glucose-1-phosphate uridylyltransferase compare
AMB_RS03510 -0.5 -2.9 flagellin-like protein compare
AMB_RS10700 -0.5 -2.7 hypothetical protein compare
AMB_RS12290 -0.5 -1.7 MBL fold metallo-hydrolase compare
AMB_RS23065 -0.5 -3.0 hypothetical protein compare
AMB_RS05500 -0.5 -2.0 GDP-mannose 4,6 dehydratase compare
AMB_RS14025 -0.5 -1.4 tRNA-Val compare
AMB_RS14665 -0.5 -2.7 TRASH domain-containing protein compare
AMB_RS06890 -0.5 -2.7 4'-phosphopantetheinyl transferase compare
AMB_RS11820 -0.5 -2.6 transcriptional regulator NrdR compare
AMB_RS18330 -0.5 -2.9 glycosyl transferase family protein compare
AMB_RS11775 -0.5 -4.5 glutamate synthase large subunit compare
AMB_RS21915 -0.5 -1.0 EamA/RhaT family transporter compare
AMB_RS12410 -0.5 -2.9 excinuclease ABC subunit UvrA compare
AMB_RS19075 -0.5 -2.8 site-specific integrase compare
AMB_RS02660 -0.5 -2.0 SCO family protein compare
AMB_RS01330 -0.5 -1.9 glycosyltransferase family 39 protein compare
AMB_RS17420 -0.5 -2.0 oxidoreductase compare
AMB_RS15930 -0.5 -1.3 hypothetical protein compare
AMB_RS17405 -0.5 -1.4 hypothetical protein compare
AMB_RS19210 -0.5 -1.5 hypothetical protein compare
AMB_RS14195 -0.5 -2.0 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta compare
AMB_RS23210 -0.5 -3.2 glycosyl transferase compare
AMB_RS21390 -0.5 -1.2 hypothetical protein compare
AMB_RS16320 -0.5 -1.5 transcriptional regulator compare
AMB_RS09150 -0.5 -1.2 Cu(I)-responsive transcriptional regulator compare
AMB_RS01325 -0.5 -1.4 phosphatase PAP2 family protein compare
AMB_RS10350 -0.5 -1.3 DNA polymerase III subunit epsilon compare
AMB_RS19965 -0.5 -1.7 lysine transporter LysE compare
AMB_RS11635 -0.5 -2.2 ATP-dependent 6-phosphofructokinase compare
AMB_RS06155 -0.5 -1.9 hypothetical protein compare
AMB_RS12295 -0.5 -0.6 TatD family deoxyribonuclease compare
AMB_RS06005 -0.5 -1.1 hypothetical protein compare
AMB_RS11290 -0.4 -2.7 D-alanyl-D-alanine carboxypeptidase compare
AMB_RS06290 -0.4 -2.2 hypothetical protein compare
AMB_RS08560 -0.4 -3.0 hypothetical protein compare
AMB_RS04685 -0.4 -2.1 DNA-binding response regulator compare
AMB_RS01815 -0.4 -0.8 hypothetical protein compare
AMB_RS23015 -0.4 -2.0 septum formation protein Maf compare
AMB_RS18015 -0.4 -1.8 ABC transporter ATP-binding protein compare
AMB_RS19310 -0.4 -1.0 hypothetical protein compare
AMB_RS16100 -0.4 -2.0 RNA polymerase sigma factor RpoH compare
AMB_RS03725 -0.4 -1.8 DNA helicase II compare
AMB_RS02085 -0.4 -2.5 hypothetical protein compare
AMB_RS22760 -0.4 -0.9 ribonuclease PH compare
AMB_RS14620 -0.4 -1.5 ArsR family transcriptional regulator compare
AMB_RS24670 -0.4 -2.6 DUF2813 domain-containing protein compare
AMB_RS05350 -0.4 -0.9 hypothetical protein compare
AMB_RS05085 -0.4 -1.1 hemerythrin compare
AMB_RS20805 -0.4 -1.3 isoprenoid biosynthesis protein ElbB compare
AMB_RS20830 -0.4 -1.9 peptide-methionine (R)-S-oxide reductase compare
AMB_RS03945 -0.4 -2.7 hypothetical protein compare
AMB_RS10855 -0.4 -0.8 RidA family protein compare
AMB_RS17545 -0.4 -1.5 methyl-accepting chemotaxis protein compare
AMB_RS24285 -0.4 -1.6 hypothetical protein compare
AMB_RS23435 -0.4 -1.8 GGDEF domain-containing protein compare
AMB_RS08255 -0.4 -0.9 hypothetical protein compare
AMB_RS12325 -0.4 -0.9 lytic murein transglycosylase compare
AMB_RS06885 -0.4 -3.9 peptide synthetase compare
AMB_RS02690 -0.4 -2.1 dihydropyrimidine dehydrogenase subunit A compare
AMB_RS06265 -0.4 -2.4 cation transporter compare
AMB_RS07565 -0.4 -2.5 single-stranded DNA-binding protein compare
AMB_RS01585 -0.4 -2.9 regulatory protein RecX compare
AMB_RS02485 -0.4 -1.3 hypothetical protein compare
AMB_RS05090 -0.4 -2.0 hypothetical protein compare
AMB_RS17585 -0.4 -2.6 type I secretion system ATPase compare
AMB_RS24460 -0.4 -1.8 hypothetical protein compare
AMB_RS05095 -0.4 -2.1 hemerythrin compare
AMB_RS12710 -0.4 -1.5 segregation/condensation protein A compare
AMB_RS07230 -0.4 -1.7 response regulator compare
AMB_RS11190 -0.4 -1.5 phosphoadenylyl-sulfate reductase compare
AMB_RS08415 -0.4 -1.1 bacterioferritin compare
AMB_RS09570 -0.4 -1.4 baseplate assembly protein compare
AMB_RS11535 -0.4 -0.7 ChbG/HpnK family deacetylase compare
AMB_RS00710 -0.4 -2.1 cupin domain-containing protein compare
AMB_RS07295 -0.4 -2.9 hypothetical protein compare
AMB_RS10850 -0.4 -0.8 hypothetical protein compare
AMB_RS07495 -0.4 -0.4 xanthine dehydrogenase compare
AMB_RS23865 -0.4 -1.3 DUF2786 domain-containing protein compare
AMB_RS05470 -0.4 -1.2 polysaccharide ABC transporter compare
AMB_RS07875 -0.4 -2.0 homocitrate synthase compare
AMB_RS24510 -0.4 -1.9 hypothetical protein compare
AMB_RS10685 -0.4 -2.0 hypothetical protein compare
AMB_RS02560 -0.4 -1.8 GTP-binding protein compare
AMB_RS05355 -0.4 -1.7 response regulator receiver modulated metal-depenent phosphohydrolase compare
AMB_RS12665 -0.4 -1.8 M23 family peptidase compare
AMB_RS03785 -0.4 -1.7 hemerythrin compare
AMB_RS24280 -0.4 -2.1 sel1 repeat family protein compare
AMB_RS07660 -0.4 -1.1 hypothetical protein compare
AMB_RS12790 -0.4 -1.9 ABC transporter ATP-binding protein compare
AMB_RS12350 -0.4 -1.3 ABC transporter ATP-binding protein compare
AMB_RS16360 -0.4 -1.2 hypothetical protein compare
AMB_RS21840 -0.4 -2.0 hypothetical protein compare
AMB_RS00680 -0.4 -1.4 3-dehydroquinate synthase compare
AMB_RS04230 -0.4 -0.9 acyl-CoA thioesterase compare
AMB_RS05495 -0.4 -3.0 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Succinic Acid in Magnetospirillum magneticum AMB-1

For carbon source Succinic Acid across organisms