Experiment set1IT055 for Magnetospirillum magneticum AMB-1

Compare to:

carbonsource_succinate

200 most detrimental genes:

  gene name fitness t score description  
AMB_RS16025 +4.5 12.5 MFS transporter compare
AMB_RS21625 +2.3 0.7 hypothetical protein compare
AMB_RS02180 +1.7 1.9 double-strand break repair protein AddB compare
AMB_RS12615 +1.7 9.6 phytoene/squalene synthetase compare
AMB_RS15610 +1.4 9.1 hypothetical protein compare
AMB_RS18370 +1.3 0.8 hypothetical protein compare
AMB_RS12385 +1.3 4.1 alanine--glyoxylate aminotransferase family protein compare
AMB_RS07800 +1.1 5.5 CBS domain-containing protein compare
AMB_RS04560 +1.1 9.1 C4-dicarboxylate ABC transporter compare
AMB_RS03145 +0.9 1.4 flagellar biosynthetic protein FliP compare
AMB_RS12960 +0.9 3.1 methylmalonyl-CoA epimerase compare
AMB_RS06045 +0.9 0.9 hypothetical protein compare
AMB_RS04520 +0.8 2.6 glycine zipper 2TM domain-containing protein compare
AMB_RS14550 +0.8 5.9 C4-dicarboxylate transporter DctA compare
AMB_RS10445 +0.8 2.3 phage Gp37/Gp68 family protein compare
AMB_RS17235 +0.8 1.3 AsmA family protein compare
AMB_RS02500 +0.8 2.3 hypothetical protein compare
AMB_RS05215 +0.7 1.7 methyl-accepting chemotaxis protein compare
AMB_RS22085 +0.7 7.1 cytochrome c oxidase accessory protein CcoG compare
AMB_RS06510 +0.7 4.6 phosphoglycolate phosphatase compare
AMB_RS10500 +0.7 1.6 XRE family transcriptional regulator compare
AMB_RS18110 +0.7 1.3 cAMP-binding protein compare
AMB_RS16990 +0.7 1.2 transporter component compare
AMB_RS01830 +0.7 0.4 hypothetical protein compare
AMB_RS08605 +0.7 1.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
AMB_RS11740 +0.7 5.4 ubiquinone-binding protein compare
AMB_RS22950 +0.7 1.8 HslU--HslV peptidase proteolytic subunit compare
AMB_RS03610 +0.6 4.0 transcription elongation factor GreA compare
AMB_RS02340 +0.6 1.6 nuclease inhibitor protein compare
AMB_RS03460 +0.6 5.0 hydroxymethylglutaryl-CoA lyase compare
AMB_RS11085 +0.6 2.6 integrase compare
AMB_RS04575 +0.6 1.4 DNA-binding response regulator compare
AMB_RS21450 +0.6 3.3 acyl-CoA carboxylase subunit beta compare
AMB_RS21965 +0.6 4.4 ribose ABC transporter permease compare
AMB_RS07815 +0.6 2.5 cation acetate symporter compare
AMB_RS21310 +0.6 0.9 zinc-finger domain-containing protein compare
AMB_RS11640 +0.6 2.1 UbiX family flavin prenyltransferase compare
AMB_RS17645 +0.6 4.4 iron-sulfur cluster carrier protein ApbC compare
AMB_RS15625 +0.6 2.1 phosphatase compare
AMB_RS21265 +0.6 1.7 c-type cytochrome biogenesis protein CcmI compare
AMB_RS21395 +0.6 1.1 hypothetical protein compare
AMB_RS06785 +0.6 0.7 hypothetical protein compare
AMB_RS21890 +0.6 0.9 arylesterase compare
AMB_RS17280 +0.6 1.4 MarR family transcriptional regulator compare
AMB_RS04325 +0.6 2.9 TetR/AcrR family transcriptional regulator compare
AMB_RS12455 +0.6 1.5 hypothetical protein compare
AMB_RS22780 +0.6 1.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
AMB_RS01305 +0.5 3.7 protocatechuate 4,5-dioxygenase subunit alpha compare
AMB_RS17540 +0.5 2.1 potassium transporter KefB compare
AMB_RS08120 +0.5 1.5 class I SAM-dependent methyltransferase compare
AMB_RS11150 +0.5 1.6 GGDEF domain-containing protein compare
AMB_RS21135 +0.5 1.0 Rieske (2Fe-2S) protein compare
AMB_RS10600 +0.5 1.3 hypothetical protein compare
AMB_RS20015 +0.5 3.5 exopolyphosphatase compare
AMB_RS22445 +0.5 2.8 tetratricopeptide repeat protein compare
AMB_RS10230 +0.5 1.9 ABC transporter ATP-binding protein compare
AMB_RS22610 +0.5 3.4 XRE family transcriptional regulator compare
AMB_RS09985 +0.5 2.8 hypothetical protein compare
AMB_RS10985 +0.5 1.5 hypothetical protein compare
AMB_RS01225 +0.5 2.4 tRNA pseudouridine(38-40) synthase TruA compare
AMB_RS16380 +0.5 1.9 carbohydrate kinase family protein compare
AMB_RS23060 +0.5 3.5 thioredoxin domain-containing protein compare
AMB_RS07520 +0.5 1.8 hypothetical protein compare
AMB_RS05405 +0.5 0.7 4Fe-4S dicluster domain-containing protein compare
AMB_RS20440 +0.5 2.3 hypothetical protein compare
AMB_RS12935 +0.5 0.7 hypothetical protein compare
AMB_RS02650 +0.5 2.2 uroporphyrinogen-III C-methyltransferase compare
AMB_RS18930 +0.5 0.6 Flp pilus assembly protein CpaB compare
AMB_RS14860 +0.5 1.3 NifX protein compare
AMB_RS06135 +0.5 1.5 MBL fold metallo-hydrolase compare
AMB_RS13850 +0.5 1.8 3-oxoadipyl-CoA thiolase compare
AMB_RS07455 +0.5 1.5 ABC transporter ATP-binding protein compare
AMB_RS17120 +0.5 1.9 hypothetical protein compare
AMB_RS15160 +0.5 1.5 paraquat-inducible protein A compare
AMB_RS14255 +0.5 1.8 hypothetical protein compare
AMB_RS11425 +0.5 1.6 ribonuclease III compare
AMB_RS24265 +0.4 1.0 hypothetical protein compare
AMB_RS08795 +0.4 0.9 hypothetical protein compare
AMB_RS03265 +0.4 3.0 enoyl-CoA hydratase compare
AMB_RS16345 +0.4 1.1 hypothetical protein compare
AMB_RS08470 +0.4 2.1 ABC transporter ATP-binding protein compare
AMB_RS18225 +0.4 2.1 PaaI family thioesterase compare
AMB_RS16330 +0.4 1.8 indolepyruvate oxidoreductase compare
AMB_RS05460 +0.4 0.9 UDP-N-acetylmuramyl pentapeptide phosphotransferase compare
AMB_RS01430 +0.4 1.9 hypothetical protein compare
AMB_RS02550 +0.4 1.2 DNA polymerase III compare
AMB_RS00905 +0.4 1.4 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase compare
AMB_RS08465 +0.4 3.1 ABC transporter ATP-binding protein compare
AMB_RS20785 +0.4 1.6 methylmalonyl Co-A mutase-associated GTPase MeaB compare
AMB_RS09055 +0.4 1.4 AsmA family protein compare
AMB_RS02655 +0.4 2.9 sulfite exporter TauE/SafE family protein compare
AMB_RS16405 +0.4 2.3 hypothetical protein compare
AMB_RS17130 +0.4 1.4 hypothetical protein compare
AMB_RS11265 +0.4 3.0 hypothetical protein compare
AMB_RS16915 +0.4 2.4 DNA-binding response regulator compare
AMB_RS14450 +0.4 2.0 ABC transporter ATP-binding protein compare
AMB_RS01265 +0.4 1.0 LysR family transcriptional regulator compare
AMB_RS11510 +0.4 1.4 DUF2478 domain-containing protein compare
AMB_RS06970 +0.4 0.6 pyridoxamine 5'-phosphate oxidase family protein compare
AMB_RS13170 +0.4 0.7 electron transport complex subunit RsxG compare
AMB_RS21790 +0.4 1.4 xanthine phosphoribosyltransferase compare
AMB_RS14655 +0.4 1.8 hypothetical protein compare
AMB_RS15215 +0.4 1.4 methyltransferase domain-containing protein compare
AMB_RS15400 +0.4 1.3 GntR family transcriptional regulator compare
AMB_RS17240 +0.4 1.4 OmpA family protein compare
AMB_RS15065 +0.4 2.2 radical SAM protein compare
AMB_RS22640 +0.4 2.0 phosphate ABC transporter ATP-binding protein compare
AMB_RS10825 +0.4 1.8 cyclohexa-1,5-dienecarbonyl-CoA hydratase compare
AMB_RS21855 +0.4 2.5 TerC family protein compare
AMB_RS23470 +0.4 1.0 hypothetical protein compare
AMB_RS01180 +0.4 1.6 dihydrofolate reductase compare
AMB_RS21490 +0.4 0.9 DUF805 domain-containing protein compare
AMB_RS22105 +0.4 2.9 transcriptional regulator compare
AMB_RS22120 +0.4 2.2 TldD/PmbA family protein compare
AMB_RS15605 +0.4 2.3 ChbG/HpnK family deacetylase compare
AMB_RS04005 +0.4 1.2 hypothetical protein compare
AMB_RS15630 +0.4 2.3 AsmA family protein compare
AMB_RS07750 +0.4 1.1 periplasmic protein kinase ArgK compare
AMB_RS18645 +0.4 1.7 7-carboxy-7-deazaguanine synthase compare
AMB_RS09060 +0.4 2.2 hypothetical protein compare
AMB_RS18220 +0.4 0.8 universal stress protein compare
AMB_RS07980 +0.4 0.9 4Fe-4S ferredoxin compare
AMB_RS17675 +0.4 1.7 flagella basal body P-ring formation protein FlgA compare
AMB_RS21735 +0.4 1.6 hypothetical protein compare
AMB_RS08665 +0.4 0.9 hypothetical protein compare
AMB_RS03655 +0.4 2.4 hypothetical protein compare
AMB_RS23990 +0.4 2.1 aminotransferase class V-fold PLP-dependent enzyme compare
AMB_RS07745 +0.4 1.2 disulfide bond formation protein B compare
AMB_RS07385 +0.4 2.1 PqqD family protein compare
AMB_RS11315 +0.4 1.4 hypothetical protein compare
AMB_RS07840 +0.4 2.6 ABC transporter substrate-binding protein compare
AMB_RS18850 +0.4 0.8 class I poly(R)-hydroxyalkanoic acid synthase compare
AMB_RS14160 +0.4 2.0 RNA polymerase sigma factor compare
AMB_RS13405 +0.4 1.1 cupin domain-containing protein compare
AMB_RS04320 +0.4 1.1 DNA-binding response regulator compare
AMB_RS14230 +0.3 1.7 response regulator compare
AMB_RS15285 +0.3 0.6 anhydro-N-acetylmuramic acid kinase compare
AMB_RS00845 +0.3 1.1 UDP-N-acetylmuramate--alanine ligase compare
AMB_RS03630 +0.3 1.7 hypothetical protein compare
AMB_RS06435 +0.3 1.7 glycosyltransferase compare
AMB_RS04280 +0.3 2.6 polyhydroxyalkanoate synthesis repressor PhaR compare
AMB_RS04035 +0.3 0.9 hypothetical protein compare
AMB_RS06565 +0.3 1.2 QacE family quaternary ammonium compound efflux SMR transporter compare
AMB_RS03240 +0.3 2.0 DNA-binding response regulator compare
AMB_RS01450 +0.3 1.9 hypothetical protein compare
AMB_RS19845 +0.3 1.0 hypothetical protein compare
AMB_RS13110 +0.3 1.0 ABC transporter ATP-binding protein compare
AMB_RS13755 +0.3 2.3 alpha-glucosidase/alpha-galactosidase compare
AMB_RS02430 +0.3 1.4 DUF3486 domain-containing protein compare
AMB_RS24570 +0.3 1.8 MarR family transcriptional regulator compare
AMB_RS09335 +0.3 0.9 HAMP domain-containing protein compare
AMB_RS23250 +0.3 1.7 hypothetical protein compare
AMB_RS01780 +0.3 1.0 sigma-70 family RNA polymerase sigma factor compare
AMB_RS08430 +0.3 2.4 glutathione-disulfide reductase compare
AMB_RS17730 +0.3 2.1 NnrS family protein compare
AMB_RS15050 +0.3 1.7 multifunctional fatty acid oxidation complex subunit alpha compare
AMB_RS03090 +0.3 1.2 tRNA guanosine(34) transglycosylase Tgt compare
AMB_RS21060 +0.3 0.9 MoxR family ATPase compare
AMB_RS06550 +0.3 0.9 lysophospholipase compare
AMB_RS22720 +0.3 1.2 hypothetical protein compare
AMB_RS22565 +0.3 2.6 MucR family transcriptional regulator compare
AMB_RS13660 +0.3 1.0 hypothetical protein compare
AMB_RS03260 +0.3 1.8 hypothetical protein compare
AMB_RS03625 +0.3 1.3 hypothetical protein compare
AMB_RS12030 +0.3 1.5 peptidylprolyl isomerase compare
AMB_RS10990 +0.3 0.6 hypothetical protein compare
AMB_RS03815 +0.3 1.9 hypothetical protein compare
AMB_RS09295 +0.3 1.2 carboxymuconolactone decarboxylase family protein compare
AMB_RS09025 +0.3 1.2 hypothetical protein compare
AMB_RS17840 +0.3 2.0 glycosyltransferase family 1 protein compare
AMB_RS02280 +0.3 1.4 hybrid sensor histidine kinase/response regulator compare
AMB_RS00965 +0.3 0.8 membrane protein compare
AMB_RS16935 +0.3 1.1 hypothetical protein compare
AMB_RS12450 +0.3 1.6 class I SAM-dependent methyltransferase compare
AMB_RS23965 +0.3 1.3 hypothetical protein compare
AMB_RS22220 +0.3 2.2 phosphoenolpyruvate--protein phosphotransferase compare
AMB_RS08460 +0.3 2.1 branched-chain amino acid ABC transporter permease compare
AMB_RS15380 +0.3 1.3 serine protease compare
AMB_RS05235 +0.3 1.5 hypothetical protein compare
AMB_RS17470 +0.3 1.8 HAMP domain-containing protein compare
AMB_RS09425 +0.3 2.0 ABC transporter permease compare
AMB_RS09085 +0.3 1.7 DUF4189 domain-containing protein compare
AMB_RS12910 +0.3 2.0 formylglycine-generating enzyme family protein compare
AMB_RS24595 +0.3 1.2 hypothetical protein compare
AMB_RS02305 +0.3 1.5 transposase compare
AMB_RS14375 +0.3 1.5 flagellar capping protein compare
AMB_RS05590 +0.3 1.3 hypothetical protein compare
AMB_RS17625 +0.3 2.2 hopanoid biosynthesis associated radical SAM protein HpnJ compare
AMB_RS03685 +0.3 2.0 spore coat polysaccharide biosynthesis protein F compare
AMB_RS20585 +0.3 0.9 DNA-binding protein compare
AMB_RS05845 +0.3 1.0 hypothetical protein compare
AMB_RS20460 +0.3 1.4 hypothetical protein compare
AMB_RS08150 +0.3 0.9 phosphoenolpyruvate--protein phosphotransferase compare
AMB_RS21830 +0.3 1.1 malonic semialdehyde reductase compare
AMB_RS09400 +0.3 1.2 ABC transporter permease compare
AMB_RS09800 +0.3 1.8 uptake hydrogenase compare
AMB_RS07895 +0.3 1.3 DUF269 domain-containing protein compare
AMB_RS24675 +0.3 1.1 hypothetical protein compare
AMB_RS03465 +0.3 2.1 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha compare
AMB_RS17475 +0.3 1.6 NADPH-dependent 2,4-dienoyl-CoA reductase compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Succinic Acid in Magnetospirillum magneticum AMB-1

For carbon source Succinic Acid across organisms