Experiment set1IT055 for Serratia liquefaciens MT49

Compare to:

Potassium dichromate 20 uM, aerobic

200 most important genes:

  gene name fitness t score description  
IAI46_00735 -4.5 -3.1 DNA helicase II compare
IAI46_03840 -4.2 -2.9 recombinase RecA compare
IAI46_24985 -4.0 -5.5 DNA polymerase I compare
IAI46_10800 -3.7 -10.0 carboxy terminal-processing peptidase compare
IAI46_20730 -3.7 -2.5 site-specific tyrosine recombinase XerD compare
IAI46_00725 -3.3 -2.2 tyrosine recombinase XerC compare
IAI46_03695 -3.2 -8.4 phosphoadenylyl-sulfate reductase compare
IAI46_05375 -2.9 -2.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI46_23690 -2.6 -2.5 adenine-specific DNA-methyltransferase compare
IAI46_08635 -2.6 -8.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI46_21325 -2.6 -4.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI46_24905 -2.5 -8.6 ATP-dependent DNA helicase RecG compare
IAI46_02275 -2.5 -6.1 aspartate carbamoyltransferase compare
IAI46_19560 -2.5 -6.9 elongation factor 4 compare
IAI46_24640 -2.5 -15.8 sulfate ABC transporter substrate-binding protein compare
IAI46_02940 -2.5 -10.0 phosphoserine phosphatase compare
IAI46_20900 -2.4 -9.8 phosphoglycerate dehydrogenase compare
IAI46_11265 -2.4 -3.5 ribonuclease T compare
IAI46_24750 -2.4 -4.0 glycosyltransferase compare
IAI46_21210 -2.3 -8.2 RNA polymerase-binding protein DksA compare
IAI46_13915 -2.3 -3.7 orotidine-5'-phosphate decarboxylase compare
IAI46_03195 -2.3 -14.4 carbamoyl-phosphate synthase large subunit compare
IAI46_10795 -2.2 -3.2 RNA chaperone ProQ compare
IAI46_03725 -2.2 -7.1 adenylyl-sulfate kinase compare
IAI46_17670 -2.2 -3.5 NADH-quinone oxidoreductase subunit J compare
IAI46_03190 -2.2 -8.0 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI46_25250 -2.2 -4.4 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI46_25110 -2.2 -5.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI46_08805 -2.2 -5.6 quinone-dependent dihydroorotate dehydrogenase compare
IAI46_12055 -2.1 -3.6 hypothetical protein compare
IAI46_01960 -2.1 -10.9 lipoprotein NlpI compare
IAI46_01365 -2.1 -14.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI46_23700 -2.0 -5.5 3-dehydroquinate synthase compare
IAI46_18770 -1.9 -4.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI46_17810 -1.9 -10.3 amidophosphoribosyltransferase compare
IAI46_23240 -1.9 -5.6 shikimate dehydrogenase compare
IAI46_25195 -1.8 -2.1 phosphate signaling complex protein PhoU compare
IAI46_03255 -1.8 -3.4 peptidylprolyl isomerase SurA compare
IAI46_01955 -1.8 -8.2 polyribonucleotide nucleotidyltransferase compare
IAI46_09740 -1.8 -5.0 dihydroorotase compare
IAI46_01360 -1.8 -11.1 phosphoribosylamine--glycine ligase compare
IAI46_24755 -1.8 -8.2 O-antigen ligase family protein compare
IAI46_19260 -1.7 -6.2 outer membrane protein assembly factor BamB compare
IAI46_24845 -1.7 -9.8 orotate phosphoribosyltransferase compare
IAI46_18885 -1.7 -6.5 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI46_24760 -1.7 -4.8 glycosyltransferase compare
IAI46_06275 -1.7 -2.6 2-oxoglutarate dehydrogenase E1 component compare
IAI46_19475 -1.7 -11.9 phosphoribosylformylglycinamidine synthase compare
IAI46_03600 -1.6 -10.2 GTP diphosphokinase compare
IAI46_05020 -1.6 -10.0 endopeptidase La compare
IAI46_24770 -1.6 -4.4 polysaccharide deacetylase family protein compare
IAI46_22450 -1.6 -2.7 3-deoxy-manno-octulosonate-8-phosphatase KdsC compare
IAI46_12205 -1.6 -2.9 3-hydroxyacyl-ACP dehydratase FabZ compare
IAI46_24785 -1.6 -2.1 glycosyltransferase compare
IAI46_19295 -1.6 -3.9 nucleoside-diphosphate kinase compare
IAI46_24665 -1.6 -4.7 envelope stress sensor histidine kinase CpxA compare
IAI46_11030 -1.5 -3.5 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
IAI46_03685 -1.5 -5.5 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
IAI46_07070 -1.5 -2.4 TetR/AcrR family transcriptional regulator compare
IAI46_20215 -1.5 -3.2 molecular chaperone Skp compare
IAI46_14650 -1.5 -2.1 zinc ribbon domain-containing protein compare
IAI46_05370 -1.5 -3.3 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI46_05010 -1.5 -3.5 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
IAI46_20670 -1.4 -1.3 Hpt domain-containing protein compare
IAI46_00015 -1.4 -5.2 DNA replication/repair protein RecF compare
IAI46_07980 -1.4 -2.1 dCTP deaminase compare
IAI46_02875 -1.4 -6.5 peptide chain release factor 3 compare
IAI46_08035 -1.4 -4.7 oligosaccharide flippase family protein compare
IAI46_16060 -1.4 -2.0 flagellar transcriptional regulator FlhD compare
IAI46_24150 -1.4 -2.0 inorganic phosphate transporter PitA compare
IAI46_19540 -1.3 -5.9 DNA repair protein RecO compare
IAI46_17515 -1.3 -3.0 2Fe-2S ferredoxin-like protein compare
IAI46_17110 -1.3 -2.3 ABC transporter substrate-binding protein compare
IAI46_05520 -1.3 -1.7 transposase compare
IAI46_01745 -1.3 -2.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI46_24900 -1.3 -4.4 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
IAI46_08640 -1.3 -6.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
IAI46_14850 -1.3 -3.1 DUF2627 domain-containing protein compare
IAI46_08960 -1.3 -3.0 hypothetical protein compare
IAI46_03690 -1.3 -5.8 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
IAI46_17675 -1.3 -2.7 NADH-quinone oxidoreductase subunit NuoI compare
IAI46_09505 -1.2 -1.6 hypothetical protein compare
IAI46_03985 -1.2 -6.8 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI46_14555 -1.2 -2.7 RidA family protein compare
IAI46_20455 -1.2 -1.8 RNA pyrophosphohydrolase compare
IAI46_20705 -1.2 -2.3 tRNA-Gly compare
IAI46_11305 -1.2 -1.9 DUF1289 domain-containing protein compare
IAI46_06505 -1.2 -2.5 6-phosphogluconolactonase compare
IAI46_24645 -1.2 -5.4 6-phosphofructokinase compare
IAI46_02320 -1.2 -5.4 ornithine carbamoyltransferase compare
IAI46_18340 -1.1 -1.7 Fe(3+)-siderophore ABC transporter permease compare
IAI46_19640 -1.1 -4.5 outer membrane protein assembly factor BamE compare
IAI46_24945 -1.1 -2.2 ribosome-dependent GTPase TypA compare
IAI46_20720 -1.1 -5.9 single-stranded-DNA-specific exonuclease RecJ compare
IAI46_08185 -1.1 -3.8 imidazole glycerol phosphate synthase subunit HisF compare
IAI46_01620 -1.1 -2.4 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI46_18025 -1.1 -3.8 chorismate synthase compare
IAI46_24955 -1.0 -4.0 nitrogen regulation protein NR(II) compare
IAI46_23205 -1.0 -1.3 5S ribosomal RNA compare
IAI46_12455 -1.0 -1.8 FCD domain-containing protein compare
IAI46_22250 -1.0 -2.5 DUF1090 domain-containing protein compare
IAI46_19600 -1.0 -4.0 ATP-dependent RNA helicase SrmB compare
IAI46_23790 -1.0 -4.0 two-component system response regulator OmpR compare
IAI46_03960 -1.0 -6.9 bifunctional chorismate mutase/prephenate dehydrogenase compare
IAI46_00610 -1.0 -1.6 dTDP-glucose 4,6-dehydratase compare
IAI46_24500 -1.0 -5.9 argininosuccinate lyase compare
IAI46_06250 -1.0 -5.7 citrate synthase compare
IAI46_08130 -1.0 -1.4 ABC transporter ATP-binding protein compare
IAI46_15990 -1.0 -1.9 flagellar protein FlhE compare
IAI46_10660 -0.9 -1.4 TetR/AcrR family transcriptional regulator compare
IAI46_04435 -0.9 -5.8 glutamate-5-semialdehyde dehydrogenase compare
IAI46_03720 -0.9 -6.5 sulfate adenylyltransferase subunit CysN compare
IAI46_11930 -0.9 -1.4 AprI/Inh family metalloprotease inhibitor compare
IAI46_24520 -0.9 -6.3 acetylornithine deacetylase compare
IAI46_05015 -0.9 -3.5 ATP-dependent protease ATP-binding subunit ClpX compare
IAI46_12505 -0.9 -2.3 formate hydrogenlyase maturation HycH family protein compare
IAI46_23815 -0.9 -1.7 ferrous iron transporter C compare
IAI46_08060 -0.9 -1.0 glycosyltransferase family 4 protein compare
IAI46_19450 -0.9 -3.4 nitrogen regulatory protein P-II compare
IAI46_08195 -0.9 -3.3 imidazole glycerol phosphate synthase subunit HisH compare
IAI46_14755 -0.9 -2.1 ASCH domain-containing protein compare
IAI46_04430 -0.9 -4.6 glutamate 5-kinase compare
IAI46_08210 -0.9 -4.4 histidinol dehydrogenase compare
IAI46_16805 -0.9 -2.7 hypothetical protein compare
IAI46_24505 -0.9 -5.8 argininosuccinate synthase compare
IAI46_09210 -0.9 -5.0 excinuclease ABC subunit UvrC compare
IAI46_03035 -0.9 -6.2 homoserine kinase compare
IAI46_03715 -0.9 -4.6 sulfate adenylyltransferase subunit CysD compare
IAI46_06255 -0.9 -1.7 succinate dehydrogenase cytochrome b556 subunit compare
IAI46_18890 -0.8 -3.3 phosphoribosylglycinamide formyltransferase compare
IAI46_19655 -0.8 -2.8 SsrA-binding protein SmpB compare
IAI46_17815 -0.8 -4.2 colicin V production protein compare
IAI46_20270 -0.8 -1.4 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI46_14415 -0.8 -2.5 hypothetical protein compare
IAI46_05240 -0.8 -3.4 recombination protein RecR compare
IAI46_14510 -0.8 -2.2 YcgL domain-containing protein compare
IAI46_08205 -0.8 -4.9 histidinol-phosphate transaminase compare
IAI46_24960 -0.8 -3.5 nitrogen regulation protein NR(I) compare
IAI46_06145 -0.8 -3.4 alpha-D-glucose phosphate-specific phosphoglucomutase compare
IAI46_19360 -0.8 -1.6 Fe-S cluster assembly transcriptional regulator IscR compare
IAI46_11755 -0.8 -1.3 carbohydrate kinase family protein compare
IAI46_18460 -0.8 -3.3 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI46_05385 -0.8 -1.0 peptidylprolyl isomerase B compare
IAI46_21415 -0.8 -4.1 pyrroline-5-carboxylate reductase compare
IAI46_24515 -0.8 -4.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI46_01345 -0.8 -4.3 YjaG family protein compare
IAI46_01070 -0.8 -0.9 SCP2 domain-containing protein compare
IAI46_19265 -0.8 -1.7 YfgM family protein compare
IAI46_15800 -0.8 -3.1 flagellar export chaperone FliS compare
IAI46_03275 -0.8 -5.6 RNA polymerase-associated protein RapA compare
IAI46_23090 -0.8 -6.1 glucose-6-phosphate isomerase compare
IAI46_13980 -0.8 -2.5 protease SohB compare
IAI46_08010 -0.8 -4.9 polysaccharide export protein compare
IAI46_08250 -0.7 -3.1 GNAT family N-acetyltransferase compare
IAI46_21945 -0.7 -5.3 outer membrane channel protein TolC compare
IAI46_20920 -0.7 -2.3 arginine exporter ArgO compare
IAI46_13040 -0.7 -1.3 AraC family transcriptional regulator compare
IAI46_18445 -0.7 -3.0 cysteine synthase A compare
IAI46_11625 -0.7 -2.9 TetR/AcrR family transcriptional regulator compare
IAI46_23505 -0.7 -2.0 peptidylprolyl isomerase compare
IAI46_08015 -0.7 -2.6 protein tyrosine phosphatase compare
IAI46_08050 -0.7 -4.0 glycosyltransferase family 4 protein compare
IAI46_15300 -0.7 -2.5 excisionase Xis compare
IAI46_01350 -0.7 -2.5 DNA-binding protein HU-alpha compare
IAI46_12610 -0.7 -1.6 alpha/beta hydrolase compare
IAI46_12460 -0.7 -1.5 fumarylacetoacetate hydrolase family protein compare
IAI46_12540 -0.7 -0.8 formate hydrogenlyase regulator HycA compare
IAI46_13110 -0.7 -2.2 L-2-amino-thiazoline-4-carboxylic acid hydrolase compare
IAI46_05545 -0.7 -1.1 hypothetical protein compare
IAI46_24380 -0.7 -3.5 DUF413 domain-containing protein compare
IAI46_08200 -0.7 -3.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI46_06015 -0.7 -2.2 PhoH family protein compare
IAI46_14810 -0.7 -2.2 PTS mannose transporter subunit IIAB compare
IAI46_10505 -0.7 -2.3 DUF1835 domain-containing protein compare
IAI46_11195 -0.7 -1.1 tRNA-Val compare
IAI46_01520 -0.7 -0.8 entericidin A/B family lipoprotein compare
IAI46_24510 -0.7 -4.1 acetylglutamate kinase compare
IAI46_05185 -0.6 -5.3 multidrug efflux RND transporter permease subunit SdeY compare
IAI46_18545 -0.6 -2.8 oxygen-dependent coproporphyrinogen oxidase compare
IAI46_11260 -0.6 -1.2 Grx4 family monothiol glutaredoxin compare
IAI46_16275 -0.6 -1.8 hypothetical protein compare
IAI46_14395 -0.6 -2.4 alpha/beta hydrolase compare
IAI46_03040 -0.6 -3.5 threonine synthase compare
IAI46_19580 -0.6 -1.0 anti-sigma-E factor RseA compare
IAI46_20395 -0.6 -3.7 amino-acid N-acetyltransferase compare
IAI46_24525 -0.6 -4.8 phosphoenolpyruvate carboxylase compare
IAI46_13550 -0.6 -2.3 peroxidase-related enzyme compare
IAI46_14685 -0.6 -2.7 copper homeostasis protein CutC compare
IAI46_10995 -0.6 -1.5 DUF2502 domain-containing protein compare
IAI46_21430 -0.6 -3.0 XTP/dITP diphosphatase compare
IAI46_09655 -0.6 -1.2 VOC family protein compare
IAI46_14155 -0.6 -1.8 DeoR/GlpR transcriptional regulator compare
IAI46_14210 -0.6 -3.0 oligopeptide ABC transporter substrate-binding protein OppA compare
IAI46_10230 -0.6 -2.0 TetR/AcrR family transcriptional regulator compare
IAI46_12390 -0.6 -1.7 heavy metal response regulator transcription factor compare
IAI46_08215 -0.6 -2.0 ATP phosphoribosyltransferase compare
IAI46_04530 -0.6 -1.5 DUF2501 domain-containing protein compare
IAI46_09065 -0.6 -2.7 CDP-glycerol glycerophosphotransferase family protein compare
IAI46_12360 -0.6 -2.1 LysR family transcriptional regulator compare
IAI46_03045 -0.6 -3.1 peroxide stress protein YaaA compare


Specific Phenotypes

None in this experiment

For Serratia liquefaciens MT49 in stress experiments

For stress Potassium dichromate across organisms