Experiment set1IT055 for Enterobacter asburiae PDN3

Compare to:

M9 with casamino acids and trichloroethylene 76.3 uM

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_0334 -5.8 -3.6 proton-translocating NADH-quinone oxidoreductase, chain N compare
EX28DRAFT_2265 -4.4 -2.1 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_0046 -4.4 -3.0 shikimate dehydrogenase compare
EX28DRAFT_2263 -4.2 -5.2 succinyl-CoA synthetase, alpha subunit compare
EX28DRAFT_2046 -4.0 -1.9 thiol reductant ABC exporter, CydC subunit compare
EX28DRAFT_2270 -4.0 -1.4 succinate dehydrogenase subunit C (EC 1.3.5.1) compare
EX28DRAFT_4544 -3.8 -2.4 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_4271 -3.7 -1.4 glycerol-3-phosphate acyltransferase (EC 2.3.1.15) compare
EX28DRAFT_3285 -3.7 -9.2 malate dehydrogenase (NAD) (EC 1.1.1.37) compare
EX28DRAFT_0933 -3.7 -13.8 tryptophan synthase, beta subunit compare
EX28DRAFT_0934 -3.4 -13.1 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_3419 -3.2 -12.2 Fructose-1,6-bisphosphatase compare
EX28DRAFT_2252 -3.1 -2.9 TolA protein compare
EX28DRAFT_4156 -3.0 -3.1 ribulose-phosphate 3-epimerase compare
EX28DRAFT_3336 -3.0 -13.8 aspartate ammonia-lyase compare
EX28DRAFT_3711 -2.9 -1.4 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_0932 -2.9 -5.6 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
EX28DRAFT_4386 -2.7 -3.5 Signal transduction histidine kinase compare
EX28DRAFT_4507 -2.7 -4.6 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
EX28DRAFT_4318 -2.7 -5.5 Glucose-6-phosphate isomerase compare
EX28DRAFT_0935 -2.7 -7.5 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
EX28DRAFT_2268 -2.7 -8.0 succinate dehydrogenase subunit A (EC 1.3.5.1) compare
EX28DRAFT_0936 -2.7 -7.0 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_2541 -2.5 -1.7 cytochrome o ubiquinol oxidase, subunit III compare
EX28DRAFT_1706 -2.5 -8.6 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
EX28DRAFT_0292 -2.5 -3.6 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_2264 -2.4 -8.1 succinyl-CoA synthetase, beta subunit compare
EX28DRAFT_0284 -2.4 -10.7 Phosphoglycerate dehydrogenase and related dehydrogenases compare
EX28DRAFT_0092 -2.4 -2.1 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_3079 -2.4 -1.2 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0325 -2.4 -6.3 NADH-quinone oxidoreductase, F subunit compare
EX28DRAFT_0331 -2.3 -4.6 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_2027 -2.3 -4.1 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_0323 -2.3 -6.7 NADH (or F420H2) dehydrogenase, subunit C compare
EX28DRAFT_4153 -2.2 -3.4 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_2045 -2.2 -1.1 thiol reductant ABC exporter, CydD subunit compare
EX28DRAFT_3710 -2.1 -6.5 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_2958 -2.1 -1.5 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_0167 -2.1 -2.3 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
EX28DRAFT_2267 -2.1 -3.9 succinate dehydrogenase and fumarate reductase iron-sulfur protein compare
EX28DRAFT_3646 -2.1 -7.6 4-hydroxythreonine-4-phosphate dehydrogenase compare
EX28DRAFT_0494 -2.0 -1.9 Protein-tyrosine-phosphatase compare
EX28DRAFT_2269 -2.0 -5.7 succinate dehydrogenase, hydrophobic membrane anchor protein compare
EX28DRAFT_2531 -2.0 -4.1 endopeptidase La compare
EX28DRAFT_3879 -2.0 -4.8 Glycosyltransferase compare
EX28DRAFT_4077 -2.0 -1.4 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
EX28DRAFT_0332 -1.9 -8.4 proton-translocating NADH-quinone oxidoreductase, chain L compare
EX28DRAFT_1986 -1.9 -1.2 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_3883 -1.9 -3.2 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_0321 -1.9 -1.1 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
EX28DRAFT_0328 -1.9 -1.8 NADH:ubiquinone oxidoreductase subunit 1 (chain H) compare
EX28DRAFT_0327 -1.9 -6.6 NADH-quinone oxidoreductase, chain G compare
EX28DRAFT_0228 -1.8 -1.8 tRNA compare
EX28DRAFT_1396 -1.8 -1.3 Amidases related to nicotinamidase compare
EX28DRAFT_0861 -1.8 -5.4 Response regulator receiver domain compare
EX28DRAFT_0322 -1.8 -8.8 NADH-quinone oxidoreductase, B subunit compare
EX28DRAFT_4475 -1.8 -4.0 Adenylate cyclase compare
EX28DRAFT_3647 -1.7 -4.9 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_3687 -1.7 -1.2 D-alanine--D-alanine ligase compare
EX28DRAFT_4341 -1.7 -3.4 Protein-disulfide isomerase compare
EX28DRAFT_0333 -1.7 -5.3 proton-translocating NADH-quinone oxidoreductase, chain M compare
EX28DRAFT_0111 -1.7 -2.4 FeS cluster assembly scaffold IscU compare
EX28DRAFT_0329 -1.7 -5.4 NADH-quinone oxidoreductase, chain I compare
EX28DRAFT_1530 -1.6 -2.4 hypothetical protein compare
EX28DRAFT_1620 -1.6 -1.6 hypothetical protein compare
EX28DRAFT_2424 -1.6 -5.1 transcriptional regulator, TetR family compare
EX28DRAFT_2259 -1.5 -3.6 Cytochrome bd-type quinol oxidase, subunit 1 compare
EX28DRAFT_0531 -1.5 -4.5 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_0272 -1.5 -1.5 phosphohistidine phosphatase, SixA compare
EX28DRAFT_0001 -1.5 -2.7 Elongation factor Tu domain 2/Elongation factor Tu C-terminal domain compare
EX28DRAFT_0948 -1.5 -1.6 hypothetical protein compare
EX28DRAFT_0434 -1.5 -1.5 hypothetical protein compare
EX28DRAFT_0769 -1.5 -1.4 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF compare
EX28DRAFT_1609 -1.5 -9.8 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region/hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region compare
EX28DRAFT_2258 -1.4 -1.2 cytochrome d oxidase, subunit II (cydB) compare
EX28DRAFT_0972 -1.4 -1.7 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_3675 -1.4 -6.1 transcriptional regulator, LacI family compare
EX28DRAFT_3611 -1.4 -0.9 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
EX28DRAFT_3519 -1.4 -1.2 Predicted transcriptional regulators compare
EX28DRAFT_0330 -1.3 -2.2 NADH:ubiquinone oxidoreductase subunit 6 (chain J) compare
EX28DRAFT_0715 -1.3 -1.7 Protein of unknown function (DUF2511) compare
EX28DRAFT_0712 -1.3 -1.3 DNA polymerase III, theta subunit compare
EX28DRAFT_1250 -1.3 -1.0 Protein of unknown function (DUF421) compare
EX28DRAFT_0970 -1.3 -3.5 ABC-type antimicrobial peptide transport system, ATPase component compare
EX28DRAFT_0545 -1.2 -1.9 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_2008 -1.2 -3.9 Aspartate/tyrosine/aromatic aminotransferase compare
EX28DRAFT_1740 -1.2 -0.9 Phosphotransferase system cellobiose-specific component IIA compare
EX28DRAFT_0523 -1.2 -1.2 Glycosyltransferase like family 2 compare
EX28DRAFT_3708 -1.2 -1.3 Transcriptional regulators compare
EX28DRAFT_0647 -1.2 -1.0 Ferritin-like protein compare
EX28DRAFT_0132 -1.2 -3.9 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_0593 -1.2 -7.9 DNA-methyltransferase (dcm) compare
EX28DRAFT_1839 -1.2 -3.1 phosphate:acyl-[acyl carrier protein] acyltransferase compare
EX28DRAFT_0324 -1.1 -2.1 NADH-quinone oxidoreductase, E subunit compare
EX28DRAFT_4155 -1.1 -2.6 DNA adenine methylase (dam) compare
EX28DRAFT_0069 -1.1 -1.5 Superfamily II DNA and RNA helicases compare
EX28DRAFT_2948 -1.1 -5.2 Uncharacterized conserved protein compare
EX28DRAFT_1497 -1.1 -1.2 hypothetical protein compare
EX28DRAFT_4452 -1.1 -1.8 thioredoxin compare
EX28DRAFT_4515 -1.1 -1.6 hypothetical protein compare
EX28DRAFT_0395 -1.1 -4.4 1-phosphofructokinase compare
EX28DRAFT_4183 -1.1 -1.5 FKBP-type peptidyl-prolyl cis-trans isomerases 1 compare
EX28DRAFT_2532 -1.1 -3.0 RNA compare
EX28DRAFT_3702 -1.1 -3.0 nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC 2.4.2.19) compare
EX28DRAFT_4158 -1.1 -3.5 tryptophanyl-tRNA synthetase (EC 6.1.1.2) compare
EX28DRAFT_0901 -1.0 -1.3 hypothetical protein compare
EX28DRAFT_2945 -1.0 -1.4 tyrosine recombinase XerD compare
EX28DRAFT_0730 -1.0 -1.3 YobH-like protein compare
EX28DRAFT_0291 -1.0 -2.5 Uncharacterized membrane protein, required for colicin V production compare
EX28DRAFT_1692 -1.0 -1.0 Biofilm development protein YmgB/AriR compare
EX28DRAFT_1650 -1.0 -1.4 ribonuclease T compare
EX28DRAFT_3426 -1.0 -1.0 conserved hypothetical protein EF_0831/AHA_3912 compare
EX28DRAFT_2075 -1.0 -2.6 type II secretion system protein H compare
EX28DRAFT_0313 -1.0 -3.5 acetate kinase compare
EX28DRAFT_2115 -1.0 -1.7 hypothetical protein compare
EX28DRAFT_2492 -0.9 -1.9 Protein of unknown function (DUF2496) compare
EX28DRAFT_2214 -0.9 -1.4 malonyl-acyl carrier protein O-methyltransferase BioC compare
EX28DRAFT_3401 -0.9 -1.1 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
EX28DRAFT_2974 -0.9 -4.7 transketolase, bacterial and yeast compare
EX28DRAFT_3861 -0.9 -2.1 Glutaredoxin, GrxC family compare
EX28DRAFT_2371 -0.9 -1.9 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase compare
EX28DRAFT_1295 -0.9 -0.9 Protein of unknown function (DUF2570) compare
EX28DRAFT_1335 -0.9 -2.3 Putative threonine efflux protein compare
EX28DRAFT_0312 -0.9 -2.4 phosphate acetyltransferase compare
EX28DRAFT_2250 -0.9 -1.8 peptidoglycan-associated lipoprotein compare
EX28DRAFT_4266 -0.9 -1.2 Fe2+/Zn2+ uptake regulation proteins compare
EX28DRAFT_2425 -0.9 -1.0 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4425 -0.9 -4.2 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
EX28DRAFT_2548 -0.9 -3.1 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_2957 -0.8 -2.4 glycine cleavage system T protein compare
EX28DRAFT_0242 -0.8 -2.4 type VI secretion protein, VC_A0107 family compare
EX28DRAFT_0065 -0.8 -0.9 thioredoxin compare
EX28DRAFT_0038 -0.8 -1.1 K+ transport systems, NAD-binding component compare
EX28DRAFT_2539 -0.8 -2.8 cytochrome o ubiquinol oxidase subunit II compare
EX28DRAFT_0081 -0.8 -3.2 DNA replication and repair protein RecO compare
EX28DRAFT_1946 -0.8 -1.4 Transcriptional regulators compare
EX28DRAFT_1932 -0.8 -1.2 Mg/Co/Ni transporter MgtE (contains CBS domain) compare
EX28DRAFT_3440 -0.8 -1.4 trehalose operon repressor, proteobacterial compare
EX28DRAFT_2543 -0.8 -3.4 protoheme IX farnesyltransferase compare
EX28DRAFT_1121 -0.8 -1.3 Sugar kinases, ribokinase family compare
EX28DRAFT_0977 -0.7 -1.1 phage shock protein B compare
EX28DRAFT_4534 -0.7 -1.4 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 compare
EX28DRAFT_0374 -0.7 -0.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0166 -0.7 -4.8 polyphosphate kinase 1 compare
EX28DRAFT_4463 -0.7 -2.9 Teichoic acid biosynthesis proteins compare
EX28DRAFT_2805 -0.7 -3.6 Transcriptional regulators compare
EX28DRAFT_3566 -0.7 -1.5 Uncharacterized conserved protein compare
EX28DRAFT_2245 -0.7 -2.9 quinolinate synthetase (EC 2.5.1.72) compare
EX28DRAFT_3616 -0.7 -1.9 threonine synthase compare
EX28DRAFT_2955 -0.7 -4.7 glycine dehydrogenase (decarboxylating) compare
EX28DRAFT_1300 -0.7 -1.1 hypothetical protein compare
EX28DRAFT_1699 -0.7 -1.3 hypothetical protein compare
EX28DRAFT_4123 -0.7 -2.0 transcriptional regulator, DeoR family compare
EX28DRAFT_2973 -0.7 -3.1 erythrose-4-phosphate dehydrogenase compare
EX28DRAFT_4457 -0.7 -2.8 nucleotide sugar dehydrogenase compare
EX28DRAFT_3281 -0.7 -5.2 Predicted ATPase compare
EX28DRAFT_4459 -0.7 -2.7 TDP-4-keto-6-deoxy-D-glucose transaminase compare
EX28DRAFT_4121 -0.7 -1.2 Rhodanese-related sulfurtransferase compare
EX28DRAFT_4299 -0.7 -0.9 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
EX28DRAFT_1882 -0.7 -2.9 Periplasmic glucans biosynthesis protein compare
EX28DRAFT_1757 -0.7 -1.7 ABC-type uncharacterized transport system, ATPase component compare
EX28DRAFT_4461 -0.7 -2.6 4-alpha-L-fucosyltransferase glycosyl transferase group 56 compare
EX28DRAFT_2222 -0.7 -3.0 formiminoglutamase (EC 3.5.3.8) compare
EX28DRAFT_1889 -0.7 -2.4 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
EX28DRAFT_1492 -0.7 -1.5 dethiobiotin synthase compare
EX28DRAFT_2544 -0.7 -2.6 Arabinose efflux permease compare
EX28DRAFT_1941 -0.7 -1.0 Protein of unknown function (DUF4089) compare
EX28DRAFT_1624 -0.7 -1.7 electron transport complex, RnfABCDGE type, B subunit compare
EX28DRAFT_4379 -0.7 -2.6 formate dehydrogenase family accessory protein FdhD compare
EX28DRAFT_4513 -0.7 -4.0 Trk-type K+ transport systems, membrane components compare
EX28DRAFT_0922 -0.7 -1.1 TonB family C-terminal domain compare
EX28DRAFT_3244 -0.7 -1.0 Predicted transcriptional regulator, BolA superfamily compare
EX28DRAFT_3058 -0.7 -1.4 Signal transduction histidine kinase compare
EX28DRAFT_4191 -0.7 -1.5 small GTP-binding protein domain compare
EX28DRAFT_2845 -0.7 -1.0 Protein of unknown function (DUF3561) compare
EX28DRAFT_0783 -0.7 -1.3 ABC-type phosphate/phosphonate transport system, periplasmic component compare
EX28DRAFT_3614 -0.7 -3.6 aspartate kinase (EC 2.7.2.4) compare
EX28DRAFT_1069 -0.7 -2.3 transcriptional regulator, TetR family compare
EX28DRAFT_2348 -0.6 -0.6 Universal stress protein UspA and related nucleotide-binding proteins compare
EX28DRAFT_3091 -0.6 -2.3 Urease accessory protein UreH compare
EX28DRAFT_3090 -0.6 -2.3 Esterase/lipase compare
EX28DRAFT_1978 -0.6 -0.9 Predicted CoA-binding protein compare
EX28DRAFT_3449 -0.6 -0.8 Predicted membrane protein compare
EX28DRAFT_1749 -0.6 -2.1 succinylarginine dihydrolase (EC 3.5.3.23) compare
EX28DRAFT_1719 -0.6 -0.6 integration host factor, alpha subunit compare
EX28DRAFT_3987 -0.6 -3.5 DNA replication and repair protein RecF compare
EX28DRAFT_3698 -0.6 -1.0 guanosine monophosphate reductase, eukaryotic compare
EX28DRAFT_0058 -0.6 -2.0 23S compare
EX28DRAFT_2491 -0.6 -2.4 restart primosome assembly protein PriC compare
EX28DRAFT_0706 -0.6 -1.4 Entner-Doudoroff aldolase compare
EX28DRAFT_3126 -0.6 -1.9 P2-like prophage tail protein X compare
EX28DRAFT_4373 -0.6 -1.5 Predicted nucleic acid-binding protein, contains PIN domain compare
EX28DRAFT_3958 -0.6 -0.9 hypothetical protein compare
EX28DRAFT_1881 -0.6 -3.9 Membrane glycosyltransferase compare
EX28DRAFT_2723 -0.6 -1.1 SsrA-binding protein compare
EX28DRAFT_1527 -0.6 -1.7 hypothetical protein compare
EX28DRAFT_3472 -0.6 -2.0 Phage integrase family compare
EX28DRAFT_2656 -0.6 -2.3 Xaa-His dipeptidase compare
EX28DRAFT_3474 -0.6 -1.4 hypothetical protein compare
EX28DRAFT_1909 -0.6 -1.4 Protein of unknown function (DUF3574) compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in stress experiments

For stress casamino acids across organisms