Experiment set1IT054 for Variovorax sp. OAS795

Compare to:

D-Xylose carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS16595 -8.4 -5.8 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS21205 -7.3 -7.1 IlvD/Edd family dehydratase compare
ABID97_RS20615 -7.0 -7.6 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS16600 -6.5 -6.4 CysB family HTH-type transcriptional regulator compare
ABID97_RS23225 -6.5 -12.5 glutamate synthase-related protein compare
ABID97_RS07405 -5.4 -13.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS07430 -5.3 -9.8 pantoate--beta-alanine ligase compare
ABID97_RS14095 -5.2 -10.4 PAS domain S-box protein compare
ABID97_RS06575 -5.0 -5.3 trehalose-phosphatase compare
ABID97_RS10885 -5.0 -4.8 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS01605 -4.8 -4.2 SDR family oxidoreductase compare
ABID97_RS15380 -4.8 -9.2 nitrite/sulfite reductase compare
ABID97_RS13860 -4.8 -7.8 hypothetical protein compare
ABID97_RS05250 -4.8 -5.7 anthranilate synthase component I compare
ABID97_RS09180 -4.6 -3.2 DNA polymerase I compare
ABID97_RS15375 -4.6 -6.2 DUF934 domain-containing protein compare
ABID97_RS07410 -4.5 -7.2 carboxylating nicotinate-nucleotide diphosphorylase compare
ABID97_RS23425 -4.4 -3.0 tRNA-Pro compare
ABID97_RS25015 -4.2 -2.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS02510 -4.2 -26.9 NADP-dependent malic enzyme compare
ABID97_RS07775 -4.1 -5.0 phosphoribosylglycinamide formyltransferase compare
ABID97_RS13990 -4.0 -2.8 amino acid aminotransferase compare
ABID97_RS02600 -4.0 -2.8 homoserine O-acetyltransferase compare
ABID97_RS16910 -4.0 -12.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABID97_RS08425 -3.9 -5.3 tryptophan synthase subunit alpha compare
ABID97_RS04855 -3.9 -2.8 CinA family protein compare
ABID97_RS07415 -3.8 -15.8 quinolinate synthase NadA compare
ABID97_RS16535 -3.7 -9.7 arginine/lysine/ornithine decarboxylase compare
ABID97_RS22625 -3.6 -16.7 HAMP domain-containing sensor histidine kinase compare
ABID97_RS23220 -3.6 -1.8 glutamate synthase subunit beta compare
ABID97_RS01565 -3.5 -15.6 DNA starvation/stationary phase protection protein compare
ABID97_RS05275 -3.5 -2.4 anthranilate phosphoribosyltransferase compare
ABID97_RS17590 -3.5 -14.5 endopeptidase La compare
ABID97_RS05260 -3.4 -1.9 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS07440 -3.4 -14.1 L-aspartate oxidase compare
ABID97_RS06815 -3.3 -8.7 SMP-30/gluconolactonase/LRE family protein conserved
ABID97_RS04760 -3.3 -2.3 SPOR domain-containing protein compare
ABID97_RS25085 -3.3 -4.4 2-hydroxychromene-2-carboxylate isomerase compare
ABID97_RS19760 -3.2 -5.7 ROK family transcriptional regulator compare
ABID97_RS02455 -3.2 -6.5 nucleotidyltransferase family protein compare
ABID97_RS03415 -3.2 -8.2 histidine utilization repressor compare
ABID97_RS14090 -3.2 -1.8 response regulator transcription factor compare
ABID97_RS03805 -3.2 -1.8 ATP-binding protein compare
ABID97_RS05750 -3.2 -2.2 glycosyltransferase compare
ABID97_RS06345 -3.1 -4.8 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS22620 -3.1 -10.9 response regulator transcription factor compare
ABID97_RS05755 -3.1 -2.1 glycosyltransferase compare
ABID97_RS23455 -3.1 -4.1 hypothetical protein compare
ABID97_RS03110 -3.0 -6.0 helix-turn-helix transcriptional regulator compare
ABID97_RS07000 -3.0 -11.1 threonine ammonia-lyase, biosynthetic compare
ABID97_RS21150 -2.9 -12.1 FAD-dependent oxidoreductase compare
ABID97_RS24055 -2.9 -2.9 TetR/AcrR family transcriptional regulator compare
ABID97_RS05280 -2.9 -2.0 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS12180 -2.9 -2.7 hypothetical protein compare
ABID97_RS03910 -2.9 -1.9 orotate phosphoribosyltransferase compare
ABID97_RS08435 -2.8 -1.9 phosphoribosylanthranilate isomerase compare
ABID97_RS11640 -2.8 -8.7 TetR family transcriptional regulator compare
ABID97_RS15370 -2.8 -7.2 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS05765 -2.8 -1.9 UDP-glucose 4-epimerase GalE compare
ABID97_RS22760 -2.7 -4.7 TetR/AcrR family transcriptional regulator compare
ABID97_RS05365 -2.7 -5.1 DUF4390 domain-containing protein compare
ABID97_RS17970 -2.7 -8.0 protein TolQ compare
ABID97_RS24920 -2.7 -2.4 Holliday junction branch migration protein RuvA compare
ABID97_RS02420 -2.7 -8.1 protealysin inhibitor emfourin compare
ABID97_RS05835 -2.6 -5.7 fumarylacetoacetate hydrolase family protein compare
ABID97_RS28990 -2.6 -4.2 aspartate 1-decarboxylase compare
ABID97_RS23450 -2.6 -5.7 MBOAT family protein compare
ABID97_RS14625 -2.6 -5.1 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS25900 -2.5 -2.3 ABC transporter permease compare
ABID97_RS15665 -2.5 -6.6 [protein-PII] uridylyltransferase compare
ABID97_RS03800 -2.5 -2.9 O-antigen ligase family protein compare
ABID97_RS17600 -2.5 -2.9 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABID97_RS10355 -2.5 -8.6 FadR/GntR family transcriptional regulator compare
ABID97_RS13450 -2.5 -3.6 TetR/AcrR family transcriptional regulator compare
ABID97_RS02460 -2.4 -16.5 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS17850 -2.4 -1.2 tetratricopeptide repeat protein compare
ABID97_RS06275 -2.4 -2.2 crossover junction endodeoxyribonuclease RuvC compare
ABID97_RS24500 -2.4 -7.5 oxalyl-CoA decarboxylase compare
ABID97_RS15360 -2.4 -9.5 GTP-binding protein compare
ABID97_RS14850 -2.4 -3.7 P-II family nitrogen regulator compare
ABID97_RS24040 -2.3 -2.9 MarR family transcriptional regulator compare
ABID97_RS21185 -2.3 -10.6 carbohydrate ABC transporter permease compare
ABID97_RS16915 -2.3 -9.3 ATP-dependent Clp protease adapter ClpS compare
ABID97_RS03125 -2.3 -11.6 benzoyl-CoA 2,3-epoxidase subunit BoxA compare
ABID97_RS19065 -2.3 -6.2 GntR family transcriptional regulator compare
ABID97_RS24170 -2.3 -5.2 ATP-binding protein compare
ABID97_RS08775 -2.3 -2.2 ribosome small subunit-dependent GTPase A compare
ABID97_RS14100 -2.3 -11.3 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABID97_RS03680 -2.2 -6.2 lysophospholipid transporter LplT compare
ABID97_RS01170 -2.2 -9.4 ABC transporter permease conserved
ABID97_RS17225 -2.2 -8.2 polyhydroxyalkanoate synthesis repressor PhaR compare
ABID97_RS01165 -2.2 -6.8 ATP-binding cassette domain-containing protein compare
ABID97_RS21195 -2.2 -9.0 ABC transporter substrate-binding protein compare
ABID97_RS15465 -2.2 -13.0 sulfate ABC transporter substrate-binding protein compare
ABID97_RS05370 -2.2 -5.9 ATP-binding protein compare
ABID97_RS06190 -2.2 -8.1 division/cell wall cluster transcriptional repressor MraZ compare
ABID97_RS28635 -2.1 -6.4 IclR family transcriptional regulator compare
ABID97_RS01175 -2.1 -8.1 D-xylose ABC transporter substrate-binding protein compare
ABID97_RS22175 -2.0 -5.8 NAD-dependent succinate-semialdehyde dehydrogenase compare
ABID97_RS08430 -2.0 -1.4 tryptophan synthase subunit beta compare
ABID97_RS21945 -2.0 -4.0 hemolysin family protein compare
ABID97_RS08365 -2.0 -3.8 ribonuclease III compare
ABID97_RS23230 -2.0 -8.1 transposase compare
ABID97_RS21180 -1.9 -9.9 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC compare
ABID97_RS12140 -1.9 -5.7 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS08710 -1.9 -7.1 polynucleotide adenylyltransferase PcnB compare
ABID97_RS13245 -1.9 -1.5 XRE family transcriptional regulator compare
ABID97_RS01650 -1.9 -1.3 orotidine-5'-phosphate decarboxylase compare
ABID97_RS16785 -1.9 -2.8 transporter compare
ABID97_RS04610 -1.9 -7.9 potassium transporter Kup compare
ABID97_RS14890 -1.8 -6.0 acetolactate synthase small subunit compare
ABID97_RS14260 -1.8 -6.7 FtsH protease activity modulator HflK compare
ABID97_RS25345 -1.8 -6.5 transporter associated domain-containing protein compare
ABID97_RS03290 -1.8 -6.0 LysR family transcriptional regulator compare
ABID97_RS05670 -1.8 -1.7 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS17895 -1.8 -8.0 transcriptional regulator NrdR compare
ABID97_RS21190 -1.8 -4.5 sugar ABC transporter permease compare
ABID97_RS06060 -1.7 -1.8 hypothetical protein compare
ABID97_RS16690 -1.7 -5.7 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS08445 -1.7 -8.2 FimV/HubP family polar landmark protein compare
ABID97_RS15490 -1.6 -7.4 FMNH2-dependent alkanesulfonate monooxygenase compare
ABID97_RS17200 -1.6 -12.2 ribonuclease R compare
ABID97_RS02940 -1.6 -11.1 FAD-linked oxidase C-terminal domain-containing protein compare
ABID97_RS14975 -1.6 -3.7 hypothetical protein compare
ABID97_RS15365 -1.6 -4.2 sulfate adenylyltransferase subunit CysD compare
ABID97_RS10295 -1.6 -1.6 winged helix-turn-helix transcriptional regulator compare
ABID97_RS20610 -1.5 -6.1 DNA-binding protein YbiB compare
ABID97_RS09595 -1.5 -1.6 Arc family DNA-binding protein compare
ABID97_RS14160 -1.5 -5.5 cell division protein ZapE compare
ABID97_RS07500 -1.5 -2.3 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS15480 -1.5 -5.3 sulfonate ABC transporter substrate-binding protein compare
ABID97_RS06450 -1.5 -2.4 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS05170 -1.5 -3.2 type VI secretion system tube protein Hcp compare
ABID97_RS24205 -1.5 -3.8 IclR family transcriptional regulator C-terminal domain-containing protein compare
ABID97_RS10590 -1.5 -9.1 nicotinate phosphoribosyltransferase compare
ABID97_RS21165 -1.5 -4.1 energy-dependent translational throttle protein EttA compare
ABID97_RS15100 -1.5 -2.1 helix-turn-helix transcriptional regulator compare
ABID97_RS25525 -1.5 -4.5 LacI family DNA-binding transcriptional regulator compare
ABID97_RS13570 -1.5 -4.2 IclR family transcriptional regulator compare
ABID97_RS06160 -1.5 -5.7 GTP-binding protein compare
ABID97_RS13865 -1.5 -2.9 hypothetical protein compare
ABID97_RS16695 -1.4 -8.5 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS14665 -1.4 -2.9 UvrD-helicase domain-containing protein compare
ABID97_RS00070 -1.4 -8.8 fumarylacetoacetate hydrolase family protein compare
ABID97_RS14920 -1.4 -8.5 IclR family transcriptional regulator compare
ABID97_RS08480 -1.4 -1.5 citrate synthase compare
ABID97_RS14925 -1.4 -9.3 arginyltransferase compare
ABID97_RS15470 -1.3 -2.0 NADPH-dependent FMN reductase compare
ABID97_RS04630 -1.3 -5.0 glutathione synthase compare
ABID97_RS26160 -1.3 -1.2 nuclear transport factor 2 family protein compare
ABID97_RS18495 -1.3 -1.3 DUF2889 domain-containing protein compare
ABID97_RS06460 -1.3 -1.7 sigma 54-interacting transcriptional regulator compare
ABID97_RS28335 -1.3 -1.3 FAD-dependent oxidoreductase compare
ABID97_RS06095 -1.3 -9.4 MBL fold metallo-hydrolase compare
ABID97_RS00255 -1.3 -9.6 type IV pilus twitching motility protein PilT compare
ABID97_RS17595 -1.3 -7.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABID97_RS02120 -1.3 -6.2 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS23915 -1.3 -3.3 heme o synthase compare
ABID97_RS17265 -1.2 -3.9 two-component system response regulator OmpR compare
ABID97_RS27235 -1.2 -1.4 hypothetical protein compare
ABID97_RS04505 -1.2 -2.2 ferric iron uptake transcriptional regulator compare
ABID97_RS00540 -1.2 -6.4 HAMP domain-containing sensor histidine kinase compare
ABID97_RS06150 -1.2 -4.9 tyrosine recombinase XerC compare
ABID97_RS20095 -1.2 -1.6 DNA topoisomerase IV subunit B compare
ABID97_RS08390 -1.2 -4.8 beta-N-acetylhexosaminidase compare
ABID97_RS22030 -1.2 -5.3 DEAD/DEAH box helicase compare
ABID97_RS07260 -1.2 -4.0 TIM44-like domain-containing protein compare
ABID97_RS02110 -1.2 -8.3 type IV pilus modification protein PilV compare
ABID97_RS07345 -1.1 -2.3 hypothetical protein compare
ABID97_RS23790 -1.1 -4.6 ATP-binding cassette domain-containing protein compare
ABID97_RS19385 -1.1 -4.3 short-chain fatty acyl-CoA regulator family protein compare
ABID97_RS29140 -1.1 -2.3 MarR family transcriptional regulator compare
ABID97_RS08440 -1.1 -3.0 tRNA pseudouridine(38-40) synthase TruA compare
ABID97_RS12155 -1.1 -5.4 glycogen debranching protein GlgX compare
ABID97_RS25100 -1.1 -5.5 hydroxymethylglutaryl-CoA lyase compare
ABID97_RS08220 -1.1 -6.2 phosphoenolpyruvate carboxylase compare
ABID97_RS04825 -1.1 -5.7 hypothetical protein compare
ABID97_RS15495 -1.1 -3.1 aliphatic sulfonate ABC transporter permease SsuC compare
ABID97_RS04245 -1.1 -1.6 acyl-CoA thioesterase compare
ABID97_RS12575 -1.1 -1.2 ATP-grasp domain-containing protein compare
ABID97_RS08340 -1.1 -5.3 MucB/RseB C-terminal domain-containing protein compare
ABID97_RS27290 -1.0 -1.1 methyltransferase domain-containing protein compare
ABID97_RS02115 -1.0 -6.4 PilW family protein compare
ABID97_RS23780 -1.0 -4.4 ABC transporter permease compare
ABID97_RS21770 -1.0 -6.6 aminopeptidase N compare
ABID97_RS19375 -1.0 -3.0 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
ABID97_RS10720 -1.0 -3.7 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABID97_RS08885 -1.0 -1.9 aromatic ring-hydroxylating dioxygenase subunit alpha compare
ABID97_RS13060 -1.0 -2.8 serine hydrolase domain-containing protein compare
ABID97_RS15580 -1.0 -3.7 sulfate ABC transporter permease subunit CysW compare
ABID97_RS14265 -1.0 -5.3 protease modulator HflC compare
ABID97_RS06140 -1.0 -1.5 DUF484 family protein compare
ABID97_RS02135 -1.0 -5.9 GspH/FimT family pseudopilin compare
ABID97_RS27085 -1.0 -1.0 DNA alkylation repair protein compare
ABID97_RS11545 -1.0 -1.0 branched-chain amino acid ABC transporter permease compare
ABID97_RS01335 -1.0 -1.3 flavin-dependent oxidoreductase compare
ABID97_RS11960 -1.0 -1.1 hypothetical protein compare
ABID97_RS08350 -1.0 -6.3 translation elongation factor 4 compare
ABID97_RS07435 -1.0 -3.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS01755 -0.9 -5.5 pyruvate kinase compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source D-Xylose in Variovorax sp. OAS795

For carbon source D-Xylose across organisms