Experiment set1IT054 for Pseudomonas syringae pv. syringae B728a ΔmexB

Compare to:

Green bean; epiphytic

200 most detrimental genes:

  gene name fitness t score description  
Psyr_2897 +2.3 7.5 regulatory protein, LuxR:Response regulator receiver compare
Psyr_2180 +2.3 1.9 transcriptional regulator, LysR family compare
Psyr_4366 +2.2 3.5 Protein of unknown function DUF163 compare
Psyr_3698 +2.2 3.7 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt compare
Psyr_3446 +2.0 6.9 Surface presentation of antigens (SPOA) protein compare
Psyr_3455 +1.9 6.7 Flagellar assembly protein FliH compare
Psyr_3461 +1.9 13.6 Helix-turn-helix, Fis-type compare
Psyr_3442 +1.9 9.2 Flagellar biosynthesis protein FliR compare
Psyr_3443 +1.9 13.6 Flagellar biosynthesis protein FliQ compare
Psyr_3454 +1.8 11.0 ATPase FliI/YscN compare
Psyr_3437 +1.8 10.9 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG compare
Psyr_2844 +1.8 1.5 hypothetical protein compare
Psyr_3441 +1.7 13.9 Flagellar biosynthetic protein FlhB compare
Psyr_3445 +1.6 8.0 Flagellar biosynthesis protein, FliO compare
Psyr_3453 +1.6 5.6 flagellar protein FliJ, putative compare
Psyr_2344 +1.6 1.4 CDS compare
Psyr_3444 +1.6 4.7 Flagellar transport protein FliP compare
Psyr_3457 +1.6 9.4 Flagellar FliF M-ring protein compare
Psyr_1987 +1.5 2.6 2-keto-3-deoxygalactonate kinase compare
Psyr_3487 +1.5 5.7 flagellar protein FlgA compare
Psyr_5036 +1.5 4.0 Response regulator receiver compare
Psyr_2065 +1.4 3.1 transcription elongation factor GreB compare
Psyr_3440 +1.4 9.0 Flagellar biosynthesis protein FlhA compare
Psyr_3463 +1.4 7.2 Flagellar protein FliS compare
Psyr_3456 +1.4 8.5 Flagellar motor switch protein FliG conserved
Psyr_3447 +1.3 6.0 Flagellar motor switch protein FliM compare
Psyr_4393 +1.3 4.3 type II secretion system protein E compare
Psyr_3478 +1.3 9.3 Flagellar basal body rod protein:Protein of unknown function DUF1078:Flagellar basal body FlaE compare
Psyr_1458 +1.2 1.5 hypothetical protein compare
Psyr_4200 +1.2 2.2 Protein of unknown function UPF0125 compare
Psyr_2599 +1.2 1.3 Metallophosphoesterase compare
Psyr_2398 +1.2 1.7 ABC transporter compare
Psyr_2434 +1.1 2.1 Carbohydrate kinase, PfkB compare
Psyr_1223 +1.1 1.6 CDS compare
Psyr_1374 +1.1 7.1 RNA polymerase, sigma 38 subunit, RpoS compare
Psyr_2422 +1.1 1.5 transcriptional regulator, LysR family compare
Psyr_3479 +1.1 5.6 Flagellar hook capping protein compare
Psyr_1312 +1.1 7.4 transcriptional regulator, TetR family conserved
Psyr_1388 +1.1 1.6 Protein of unknown function UPF0066 compare
Psyr_3448 +1.1 4.9 Flagellar basal body-associated protein FliL compare
Psyr_3474 +1.1 6.4 Flagellar L-ring protein compare
Psyr_4027 +1.1 7.1 conserved hypothetical protein compare
Psyr_2399 +1.1 2.4 Binding-protein-dependent transport systems inner membrane component compare
Psyr_3266 +1.1 2.4 Oxidoreductase, N-terminal:Oxidoreductase, C-terminal compare
Psyr_1916 +1.0 2.2 Peptidase S24, S26A and S26B compare
Psyr_0013 +1.0 1.2 DNA-3-methyladenine glycosylase I compare
Psyr_1833 +1.0 7.5 amino acid ABC transporter substrate-binding protein, PAAT family compare
Psyr_3472 +1.0 7.0 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase compare
Psyr_2710 +1.0 2.1 transcriptional regulator, GntR family compare
Psyr_3449 +1.0 5.3 Flagellar hook-length control protein compare
Psyr_2928 +1.0 2.1 ABC transporter, transmembrane region:ABC transporter compare
Psyr_3191 +0.9 3.0 Protein of unknown function DUF489 compare
Psyr_1455 +0.9 2.8 conserved hypothetical protein compare
Psyr_0081 +0.9 1.7 ABC transporter compare
Psyr_0087 +0.9 2.6 Fatty acid desaturase compare
Psyr_2560 +0.9 2.3 hypothetical protein compare
Psyr_3473 +0.9 3.0 Flagellar P-ring protein compare
Psyr_2498 +0.9 2.3 GCN5-related N-acetyltransferase compare
Psyr_5072 +0.9 1.6 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_3462 +0.9 2.3 conserved hypothetical protein compare
Psyr_3929 +0.9 2.3 conserved hypothetical protein compare
Psyr_3048 +0.9 2.3 transcriptional regulator, LysR family compare
Psyr_2359 +0.9 1.6 conserved hypothetical protein compare
Psyr_1234 +0.9 1.7 RNA methyltransferase TrmH, group 1 compare
Psyr_1490 +0.9 1.4 conserved domain protein compare
Psyr_3183 +0.9 4.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Psyr_4818 +0.9 1.2 chorismate mutase compare
Psyr_3841 +0.9 2.0 conserved hypothetical protein compare
Psyr_4418 +0.9 1.5 Precorrin-6Y C5,15-methyltransferase (decarboxylating) compare
Psyr_3627 +0.8 1.7 OsmC-like protein compare
Psyr_0845 +0.8 2.8 conserved hypothetical protein compare
Psyr_2594 +0.8 1.5 unknown conserved protein in bacilli compare
Psyr_2811 +0.8 1.0 hypothetical protein compare
Psyr_4902 +0.8 1.6 Protein of unknown function DUF495 compare
Psyr_2942 +0.8 2.0 amino acid ABC transporter ATP-binding protein, PAAT family compare
Psyr_3812 +0.8 1.8 CDS compare
Psyr_0789 +0.8 2.3 chemotaxis sensory transducer compare
Psyr_3481 +0.8 3.9 Flagellar basal-body rod protein FlgB compare
Psyr_2014 +0.8 2.4 conserved hypothetical protein compare
Psyr_3848 +0.8 1.1 L-valine ABC transporter ATP-binding protein / L-isoleucine ABC transporter ATP-binding protein / L-leucine ABC transporter ATP-binding protein compare
Psyr_0432 +0.8 1.3 conserved hypothetical protein compare
Psyr_4933 +0.8 1.8 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase compare
Psyr_0217 +0.8 1.3 conserved hypothetical protein compare
Psyr_2406 +0.8 1.4 Flavin reductase-like protein compare
Psyr_0053 +0.7 2.0 conserved hypothetical protein compare
Psyr_4658 +0.7 1.0 CDS compare
Psyr_1005 +0.7 1.6 OmpA/MotB compare
Psyr_3220 +0.7 4.1 Aminotransferase, class V compare
Psyr_0622 +0.7 1.4 transcriptional regulator, XRE family compare
Psyr_0729 +0.7 1.9 CDS compare
Psyr_3523 +0.7 3.7 Peptidase M20D, amidohydrolase compare
Psyr_2853 +0.7 1.4 CDS compare
Psyr_4744 +0.7 1.0 hypothetical protein compare
Psyr_0475 +0.7 2.4 Protein of unknown function YGGT compare
Psyr_2248 +0.7 2.3 Phosphonate-binding periplasmic protein compare
Psyr_0145 +0.7 2.7 conserved hypothetical protein compare
Psyr_2619 +0.7 1.2 diaminobutyrate aminotransferase apoenzyme compare
Psyr_1214 +0.7 2.0 type III secretion protein HrpQ compare
Psyr_2155 +0.7 1.4 Carbohydrate kinase, PfkB compare
Psyr_3480 +0.7 2.8 Flagellar basal-body rod protein FlgC compare
Psyr_2936 +0.7 2.4 conserved hypothetical protein compare
Psyr_2600 +0.7 1.4 hypothetical protein compare
Psyr_3367 +0.7 1.7 Iron permease FTR1 compare
Psyr_3225 +0.7 4.1 Protein-tyrosine kinase compare
Psyr_3471 +0.7 4.4 Flagellar basal body rod protein:Protein of unknown function DUF1078 compare
Psyr_4745 +0.7 1.1 hypothetical protein compare
Psyr_3227 +0.7 2.8 Glycosyl transferase, family 2 compare
Psyr_1978 +0.7 1.5 Thioesterase superfamily compare
Psyr_3282 +0.7 3.0 transcriptional regulator, TetR family compare
Psyr_2242 +0.7 1.5 conserved hypothetical protein compare
Psyr_0875 +0.7 1.6 outer membrane transport energization protein TonB compare
Psyr_4596 +0.7 1.8 conserved hypothetical protein compare
Psyr_2141 +0.7 1.8 hypothetical protein compare
Psyr_3222 +0.7 3.1 Polysaccharide biosynthesis protein compare
Psyr_3718 +0.7 2.2 hypothetical protein compare
Psyr_1999 +0.7 1.5 OmpA/MotB compare
Psyr_3863 +0.7 3.2 SEC-C motif protein compare
Psyr_1670 +0.6 1.7 Short-chain dehydrogenase/reductase SDR compare
Psyr_3664 +0.6 1.3 DTW compare
Psyr_3004 +0.6 2.8 transcriptional regulator, LysR family compare
Psyr_5012 +0.6 2.9 conserved hypothetical protein compare
Psyr_1598 +0.6 1.7 diguanylate cyclase/phosphodiesterase compare
Psyr_3464 +0.6 3.6 Flagellar hook-associated protein 2, N-terminal:Flagellar hook-associated 2, C-terminal:Flagellin hook IN compare
Psyr_2355 +0.6 3.0 GAF compare
Psyr_3518 +0.6 1.8 hypothetical protein compare
Psyr_0999 +0.6 1.4 luciferase compare
Psyr_3852 +0.6 1.6 lipoprotein SlyB, putative compare
Psyr_3470 +0.6 4.7 Flagellin, N-terminal compare
Psyr_4219 +0.6 3.8 GAF compare
Psyr_3249 +0.6 1.7 conserved hypothetical protein compare
Psyr_1566 +0.6 2.6 Nitroreductase compare
Psyr_3241 +0.6 2.0 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region:D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein compare
Psyr_0653 +0.6 0.9 transcriptional regulator, MerR family compare
Psyr_1930 +0.6 0.5 hypothetical protein compare
Psyr_4980 +0.6 2.6 conserved hypothetical protein compare
Psyr_2122 +0.6 3.1 protocatechuate 3,4-dioxygenase, beta subunit compare
Psyr_0979 +0.6 1.4 conserved hypothetical protein compare
Psyr_0844 +0.6 1.9 Protein of unknown function DUF446 compare
Psyr_0283 +0.6 1.9 NLPA lipoprotein compare
Psyr_3486 +0.6 2.9 Response regulator receiver:CheW-like protein compare
Psyr_2209 +0.6 1.4 ABC transporter, substrate-binding protein, aliphatic sulfonate compare
Psyr_2989 +0.6 1.8 6-phosphogluconate dehydrogenase (decarboxylating) compare
Psyr_5043 +0.6 3.0 Thioesterase superfamily compare
Psyr_2839 +0.6 2.3 conserved hypothetical protein compare
Psyr_2056 +0.6 1.5 CHAD compare
Psyr_2877 +0.6 1.7 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare
Psyr_3459 +0.6 1.4 Helix-turn-helix, Fis-type compare
Psyr_4390 +0.6 2.8 Flp pilus assembly CpaB compare
Psyr_4374 +0.6 3.7 conserved hypothetical protein compare
Psyr_2679 +0.6 2.2 Binding-protein-dependent transport systems inner membrane component compare
Psyr_4339 +0.6 4.1 ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_3900 +0.6 1.6 conserved hypothetical protein compare
Psyr_4373 +0.6 3.9 PAS compare
Psyr_3311 +0.6 2.1 Virulence factor MVIN-like protein compare
Psyr_1961 +0.6 3.4 TonB-dependent siderophore receptor compare
Psyr_2952 +0.6 1.2 NADP oxidoreductase, coenzyme F420-dependent compare
Psyr_1187 +0.6 1.7 type III chaperone protein ShcE compare
Psyr_2894 +0.6 1.1 conserved hypothetical protein compare
Psyr_2508 +0.6 1.7 transcriptional regulator, IclR family compare
Psyr_2906 +0.6 0.9 Pilus retraction protein PilT compare
Psyr_2694 +0.6 2.2 conserved hypothetical protein compare
Psyr_3837 +0.6 0.7 conserved hypothetical protein compare
Psyr_0611 +0.5 2.0 ABC transporter compare
Psyr_3124 +0.5 3.0 TonB-dependent siderophore receptor compare
Psyr_5022 +0.5 1.4 conserved hypothetical protein compare
Psyr_3914 +0.5 2.4 DSBA oxidoreductase compare
Psyr_0561 +0.5 3.5 chemotaxis motA protein compare
Psyr_2318 +0.5 2.0 CDS compare
Psyr_4910 +0.5 1.1 hypothetical protein compare
Psyr_3303 +0.5 2.9 Polysaccharide export protein compare
Psyr_2553 +0.5 1.0 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases-related enzyme compare
Psyr_3727 +0.5 1.0 conserved hypothetical protein compare
Psyr_4392 +0.5 3.0 pilus assembly protein CpaE compare
Psyr_4869 +0.5 1.3 transcriptional regulator, TetR family compare
Psyr_3041 +0.5 1.9 Bacillolysin compare
Psyr_0695 +0.5 2.2 extracellular solute-binding protein, family 3 compare
Psyr_3439 +0.5 1.9 GTP-binding signal recognition particle SRP54, G-domain protein compare
Psyr_0284 +0.5 1.2 Electron transport protein SCO1/SenC compare
Psyr_3808 +0.5 1.2 hypothetical protein compare
Psyr_1758 +0.5 3.4 extracellular solute-binding protein, family 5 compare
Psyr_2253 +0.5 1.0 Phosphonate metabolism compare
Psyr_0174 +0.5 1.7 Sodium:dicarboxylate symporter compare
Psyr_1084 +0.5 1.0 Histone-like bacterial DNA-binding protein compare
Psyr_0251 +0.5 2.3 transcriptional regulator, AsnC family compare
Psyr_3460 +0.5 1.7 PAS/PAC sensor signal transduction histidine kinase compare
Psyr_1270 +0.5 1.0 conserved hypothetical protein compare
Psyr_2991 +0.5 1.1 GCN5-related N-acetyltransferase compare
Psyr_2191 +0.5 2.4 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_3188 +0.5 1.4 transcriptional regulator, LysR family compare
Psyr_2171 +0.5 1.0 HpcH/HpaI aldolase compare
Psyr_1276 +0.5 2.4 conserved hypothetical protein compare
Psyr_1006 +0.5 1.7 Phospholipid/glycerol acyltransferase compare
Psyr_0144 +0.5 1.9 transcriptional regulator, AsnC family compare
Psyr_1130 +0.5 1.4 conserved hypothetical protein compare
Psyr_3826 +0.5 1.5 Peptidyl-prolyl cis-trans isomerase, cyclophilin type compare
Psyr_4733 +0.5 1.9 betaine aldehyde dehydrogenase compare
Psyr_2510 +0.5 1.8 2-keto-3-deoxygluconate kinase compare
Psyr_1661 +0.5 3.4 conserved hypothetical protein compare
Psyr_1931 +0.5 1.6 hypothetical protein compare
Psyr_4797 +0.5 0.8 Protein of unknown function DUF1090 compare


Specific Phenotypes

For 26 genes in this experiment

For in planta epiphytic in Pseudomonas syringae pv. syringae B728a ΔmexB

For in planta epiphytic across organisms