Experiment set1IT054 for Rhizobium sp. OAE497

Compare to:

L-Lysine carbon source

200 most important genes:

  gene name fitness t score description  
ABIE40_RS19355 -6.9 -4.8 thioredoxin compare
ABIE40_RS18380 -6.7 -6.5 3-isopropylmalate dehydratase large subunit compare
ABIE40_RS02340 -6.6 -7.9 O-succinylhomoserine sulfhydrylase compare
ABIE40_RS18590 -6.6 -10.0 homoserine O-succinyltransferase compare
ABIE40_RS19050 -6.4 -8.7 3-isopropylmalate dehydrogenase compare
ABIE40_RS00245 -6.3 -7.6 prephenate dehydratase compare
ABIE40_RS17525 -6.2 -3.3 lipoprotein compare
ABIE40_RS11950 -6.0 -7.1 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABIE40_RS09095 -5.8 -4.0 PAS domain-containing sensor histidine kinase compare
ABIE40_RS06555 -5.7 -3.1 phosphoribosylglycinamide formyltransferase compare
ABIE40_RS09545 -5.5 -3.4 anthranilate phosphoribosyltransferase compare
ABIE40_RS09660 -5.5 -12.9 AI-2E family transporter compare
ABIE40_RS19415 -5.5 -14.7 phosphoenolpyruvate carboxykinase compare
ABIE40_RS17530 -5.4 -3.8 diaminopimelate decarboxylase compare
ABIE40_RS12855 -5.4 -11.6 glycosyltransferase family 2 protein compare
ABIE40_RS16320 -5.4 -3.7 histidinol-phosphatase compare
ABIE40_RS03665 -5.3 -3.7 ATP phosphoribosyltransferase compare
ABIE40_RS11060 -5.3 -3.7 lipid A biosynthesis lauroyl acyltransferase compare
ABIE40_RS20460 -5.3 -3.6 precorrin-3B synthase compare
ABIE40_RS15855 -5.2 -3.4 cell division protein ZapA compare
ABIE40_RS01970 -5.2 -3.6 acetylglutamate kinase compare
ABIE40_RS03660 -5.2 -3.6 ATP phosphoribosyltransferase regulatory subunit compare
ABIE40_RS02325 -5.2 -3.6 ornithine carbamoyltransferase compare
ABIE40_RS13330 -5.1 -15.8 2-isopropylmalate synthase compare
ABIE40_RS12845 -5.1 -4.5 glycosyltransferase family 4 protein compare
ABIE40_RS14990 -5.0 -12.0 glycosyltransferase family 2 protein compare
ABIE40_RS18970 -4.9 -3.4 murein hydrolase activator EnvC compare
ABIE40_RS06930 -4.8 -3.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABIE40_RS09725 -4.8 -3.3 phosphoribosyl-AMP cyclohydrolase compare
ABIE40_RS11175 -4.8 -3.3 cobyric acid synthase compare
ABIE40_RS19440 -4.8 -3.3 imidazole glycerol phosphate synthase subunit HisF compare
ABIE40_RS10180 -4.8 -3.3 phosphoribosylformylglycinamidine synthase subunit PurL compare
ABIE40_RS19330 -4.7 -3.3 phosphoribosylanthranilate isomerase compare
ABIE40_RS15010 -4.7 -12.2 metallophosphoesterase compare
ABIE40_RS20440 -4.7 -3.2 cobalt-precorrin-6A reductase compare
ABIE40_RS19460 -4.7 -5.6 imidazoleglycerol-phosphate dehydratase HisB compare
ABIE40_RS06730 -4.7 -6.4 riboflavin synthase compare
ABIE40_RS20435 -4.6 -3.2 precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE compare
ABIE40_RS11165 -4.6 -2.9 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
ABIE40_RS19040 -4.6 -8.8 3-isopropylmalate dehydratase small subunit compare
ABIE40_RS13410 -4.5 -4.4 anthranilate synthase compare
ABIE40_RS02725 -4.5 -7.5 histidinol dehydrogenase compare
ABIE40_RS05670 -4.5 -7.5 membrane protein compare
ABIE40_RS02320 -4.5 -3.1 aspartate aminotransferase family protein compare
ABIE40_RS14980 -4.5 -3.1 glycoside hydrolase family 16 protein compare
ABIE40_RS05660 -4.5 -3.1 response regulator transcription factor compare
ABIE40_RS06270 -4.5 -7.4 amidophosphoribosyltransferase compare
ABIE40_RS01930 -4.4 -2.3 succinyl-diaminopimelate desuccinylase compare
ABIE40_RS19645 -4.4 -14.0 acyltransferase compare
ABIE40_RS11495 -4.4 -4.3 acetolactate synthase 3 large subunit compare
ABIE40_RS19450 -4.4 -3.0 imidazole glycerol phosphate synthase subunit HisH compare
ABIE40_RS17650 -4.4 -4.3 cobaltochelatase subunit CobS compare
ABIE40_RS11095 -4.4 -3.0 adenosylcobinamide-phosphate synthase CbiB compare
ABIE40_RS20450 -4.3 -4.2 precorrin-2 C(20)-methyltransferase compare
ABIE40_RS16645 -4.3 -19.3 LacI family DNA-binding transcriptional regulator compare
ABIE40_RS16070 -4.3 -4.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
ABIE40_RS08980 -4.3 -8.7 transcriptional repressor LexA compare
ABIE40_RS16655 -4.2 -8.1 creatininase family protein compare
ABIE40_RS10725 -4.2 -5.0 adenosylcobinamide-GDP ribazoletransferase compare
ABIE40_RS17595 -4.2 -4.1 histidinol-phosphate transaminase compare
ABIE40_RS19130 -4.2 -2.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABIE40_RS14940 -4.2 -13.6 acyltransferase compare
ABIE40_RS20465 -4.1 -2.9 precorrin-6A synthase (deacetylating) compare
ABIE40_RS09360 -4.1 -5.6 excinuclease ABC subunit UvrA compare
ABIE40_RS18925 -4.1 -6.3 glutamate-5-semialdehyde dehydrogenase compare
ABIE40_RS00625 -4.1 -13.6 ABC transporter permease compare
ABIE40_RS11105 -4.1 -7.3 cobyrinate a,c-diamide synthase compare
ABIE40_RS08005 -4.0 -2.8 dihydroxy-acid dehydratase compare
ABIE40_RS10720 -4.0 -2.9 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
ABIE40_RS03405 -4.0 -2.8 anti-sigma factor compare
ABIE40_RS11150 -4.0 -9.6 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
ABIE40_RS00620 -4.0 -12.2 microcin C ABC transporter permease YejB compare
ABIE40_RS12135 -3.9 -2.7 methionine synthase compare
ABIE40_RS19445 -3.9 -2.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABIE40_RS06560 -3.9 -6.9 phosphoribosylformylglycinamidine cyclo-ligase compare
ABIE40_RS14855 -3.9 -8.2 NAD-dependent epimerase compare
ABIE40_RS06775 -3.8 -3.9 DUF177 domain-containing protein compare
ABIE40_RS19480 -3.7 -2.6 DUF1402 family protein compare
ABIE40_RS20430 -3.7 -3.6 precorrin-4 C(11)-methyltransferase compare
ABIE40_RS11155 -3.6 -8.7 cobaltochelatase subunit CobN compare
ABIE40_RS09320 -3.6 -15.8 extracellular solute-binding protein compare
ABIE40_RS18640 -3.6 -12.9 M48 family metalloprotease compare
ABIE40_RS18720 -3.6 -2.5 polyprenyl synthetase family protein compare
ABIE40_RS05430 -3.6 -2.5 phosphoribosylamine--glycine ligase compare
ABIE40_RS00580 -3.6 -2.5 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
ABIE40_RS04770 -3.6 -8.6 TetR/AcrR family transcriptional regulator compare
ABIE40_RS09150 -3.6 -18.9 nitrite/sulfite reductase compare
ABIE40_RS04215 -3.6 -3.0 sensor domain-containing phosphodiesterase compare
ABIE40_RS00340 -3.6 -3.5 30S ribosome-binding factor RbfA compare
ABIE40_RS08635 -3.5 -14.4 class I poly(R)-hydroxyalkanoic acid synthase compare
ABIE40_RS03485 -3.5 -13.4 MAPEG family protein compare
ABIE40_RS14850 -3.5 -13.2 UDP-glucose/GDP-mannose dehydrogenase family protein compare
ABIE40_RS05165 -3.5 -7.3 peptidoglycan-binding protein compare
ABIE40_RS17645 -3.5 -4.1 cobaltochelatase subunit CobT compare
ABIE40_RS16570 -3.5 -4.1 tetratricopeptide repeat protein compare
ABIE40_RS17590 -3.5 -2.4 prephenate/arogenate dehydrogenase family protein compare
ABIE40_RS00630 -3.4 -10.0 ABC transporter ATP-binding protein compare
ABIE40_RS20455 -3.4 -2.5 precorrin-8X methylmutase compare
ABIE40_RS18055 -3.4 -4.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABIE40_RS20445 -3.3 -1.5 precorrin-3B C(17)-methyltransferase compare
ABIE40_RS19260 -3.3 -3.2 DNA polymerase III subunit epsilon compare
ABIE40_RS08425 -3.3 -3.5 iron-sulfur cluster insertion protein ErpA compare
ABIE40_RS07105 -3.2 -3.6 DNA-binding protein HupB compare
ABIE40_RS09540 -3.2 -9.5 peptidylprolyl isomerase compare
ABIE40_RS19100 -3.2 -9.6 lytic transglycosylase domain-containing protein compare
ABIE40_RS09425 -3.1 -6.1 peptidylprolyl isomerase compare
ABIE40_RS14985 -3.1 -2.6 glycosyltransferase compare
ABIE40_RS05155 -3.1 -5.9 DUF5330 domain-containing protein compare
ABIE40_RS10415 -3.1 -8.9 ABC-type transport auxiliary lipoprotein family protein compare
ABIE40_RS17450 -3.1 -7.4 YqaA family protein compare
ABIE40_RS05665 -3.1 -5.0 HAMP domain-containing sensor histidine kinase compare
ABIE40_RS13635 -3.1 -19.0 peptide antibiotic transporter SbmA compare
ABIE40_RS06725 -3.1 -7.6 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD compare
ABIE40_RS18920 -3.1 -5.2 glutamate 5-kinase compare
ABIE40_RS12925 -3.0 -12.1 pyridoxal phosphate-dependent aminotransferase compare
ABIE40_RS09770 -3.0 -6.9 D-alanyl-D-alanine carboxypeptidase compare
ABIE40_RS19435 -2.9 -2.4 phosphoribosyl-ATP diphosphatase compare
ABIE40_RS13370 -2.9 -10.3 CDF family cation efflux transporter EmfA compare
ABIE40_RS18685 -2.8 -5.0 beta-ketoacyl-ACP reductase compare
ABIE40_RS12360 -2.8 -10.9 DUF5131 family protein compare
ABIE40_RS11605 -2.8 -10.9 AsmA-like C-terminal region-containing protein compare
ABIE40_RS11910 -2.8 -8.9 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
ABIE40_RS15890 -2.7 -8.7 fructose bisphosphate aldolase compare
ABIE40_RS15345 -2.7 -9.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABIE40_RS08140 -2.7 -12.4 vitamin B12-dependent ribonucleotide reductase compare
ABIE40_RS01730 -2.7 -2.3 NifU family protein compare
ABIE40_RS18800 -2.6 -11.4 glucoamylase family protein compare
ABIE40_RS09090 -2.6 -7.6 nitrogen regulation protein NR(I) compare
ABIE40_RS24490 -2.6 -1.6 flavin reductase compare
ABIE40_RS00460 -2.6 -2.5 transglycosylase domain-containing protein compare
ABIE40_RS18690 -2.5 -6.2 acetyl-CoA C-acetyltransferase compare
ABIE40_RS06720 -2.5 -2.2 transcriptional regulator NrdR compare
ABIE40_RS00935 -2.5 -6.5 ABC transporter substrate-binding protein compare
ABIE40_RS10420 -2.4 -8.6 MCE family protein compare
ABIE40_RS00725 -2.4 -4.3 DNA cytosine methyltransferase compare
ABIE40_RS19360 -2.4 -4.3 double-strand break repair helicase AddA compare
ABIE40_RS19135 -2.4 -9.2 heparinase II/III family protein compare
ABIE40_RS09720 -2.4 -4.5 GTP cyclohydrolase I FolE compare
ABIE40_RS12850 -2.4 -8.5 glycosyltransferase compare
ABIE40_RS17560 -2.4 -3.9 cell division ATP-binding protein FtsE compare
ABIE40_RS09510 -2.4 -9.2 septal ring lytic transglycosylase RlpA family protein compare
ABIE40_RS09155 -2.3 -3.8 DUF934 domain-containing protein compare
ABIE40_RS02590 -2.3 -10.3 FAD-dependent oxidoreductase compare
ABIE40_RS15650 -2.3 -6.7 TIGR00282 family metallophosphoesterase compare
ABIE40_RS26345 -2.3 -10.6 dicarboxylate/amino acid:cation symporter compare
ABIE40_RS09140 -2.3 -7.4 siroheme synthase CysG compare
ABIE40_RS11875 -2.3 -1.4 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
ABIE40_RS17390 -2.3 -8.3 peptidylprolyl isomerase compare
ABIE40_RS26335 -2.2 -7.6 sigma-54 dependent transcriptional regulator compare
ABIE40_RS10480 -2.2 -12.6 LTA synthase family protein compare
ABIE40_RS10535 -2.2 -13.7 L,D-transpeptidase family protein compare
ABIE40_RS00930 -2.2 -6.7 ABC transporter permease compare
ABIE40_RS06050 -2.2 -3.8 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABIE40_RS08865 -2.2 -7.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE40_RS13030 -2.2 -4.7 peptidoglycan editing factor PgeF compare
ABIE40_RS18255 -2.1 -1.8 hypothetical protein compare
ABIE40_RS08645 -2.1 -5.9 LL-diaminopimelate aminotransferase compare
ABIE40_RS06575 -2.1 -12.0 RNA degradosome polyphosphate kinase compare
ABIE40_RS10430 -2.1 -8.9 MlaE family lipid ABC transporter permease subunit compare
ABIE40_RS10705 -2.1 -13.3 HAMP domain-containing sensor histidine kinase compare
ABIE40_RS10200 -2.1 -1.8 Grx4 family monothiol glutaredoxin compare
ABIE40_RS14955 -2.1 -7.7 sugar transferase compare
ABIE40_RS10425 -2.1 -4.7 ABC transporter ATP-binding protein compare
ABIE40_RS19455 -2.1 -1.4 DUF2628 domain-containing protein compare
ABIE40_RS19700 -2.1 -3.2 MBL fold metallo-hydrolase compare
ABIE40_RS08935 -2.1 -3.1 RIP metalloprotease RseP compare
ABIE40_RS08600 -2.0 -6.9 trigger factor compare
ABIE40_RS19495 -2.0 -10.9 L,D-transpeptidase compare
ABIE40_RS08970 -2.0 -6.9 citrate synthase compare
ABIE40_RS10390 -2.0 -2.0 2Fe-2S iron-sulfur cluster-binding protein compare
ABIE40_RS02525 -2.0 -10.3 peptidoglycan-binding protein compare
ABIE40_RS19265 -2.0 -2.3 protein-export chaperone SecB compare
ABIE40_RS08485 -1.9 -5.3 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABIE40_RS10100 -1.9 -5.9 branched-chain amino acid ABC transporter substrate-binding protein compare
ABIE40_RS17585 -1.9 -4.6 DUF2125 domain-containing protein compare
ABIE40_RS18615 -1.9 -2.6 MarR family transcriptional regulator compare
ABIE40_RS00490 -1.9 -9.0 DNA polymerase I compare
ABIE40_RS01860 -1.9 -6.6 RNA polymerase factor sigma-54 compare
ABIE40_RS02585 -1.9 -9.7 acetyl-CoA C-acetyltransferase compare
ABIE40_RS10900 -1.8 -3.3 cold-shock protein compare
ABIE40_RS26340 -1.8 -8.8 ATP-binding protein compare
ABIE40_RS10155 -1.8 -2.0 phosphoribosylformylglycinamidine synthase subunit PurQ compare
ABIE40_RS30405 -1.8 -1.9 hypothetical protein compare
ABIE40_RS09085 -1.8 -4.5 nitrogen regulation protein NR(II) compare
ABIE40_RS15730 -1.8 -3.5 crossover junction endodeoxyribonuclease RuvC compare
ABIE40_RS17565 -1.8 -1.5 ABC transporter permease compare
ABIE40_RS06275 -1.8 -3.9 CvpA family protein compare
ABIE40_RS05695 -1.8 -2.4 Do family serine endopeptidase compare
ABIE40_RS19245 -1.7 -3.2 Maf-like protein compare
ABIE40_RS09170 -1.7 -4.3 cytochrome c biogenesis CcdA family protein compare
ABIE40_RS04820 -1.7 -2.3 TetR family transcriptional regulator compare
ABIE40_RS16840 -1.7 -5.1 TetR/AcrR family transcriptional regulator compare
ABIE40_RS18735 -1.7 -5.6 TetR/AcrR family transcriptional regulator compare
ABIE40_RS11810 -1.6 -4.9 D-alanine--D-alanine ligase compare
ABIE40_RS04430 -1.6 -6.6 hypothetical protein compare
ABIE40_RS13005 -1.6 -6.1 pyrroline-5-carboxylate reductase compare
ABIE40_RS02405 -1.6 -3.8 response regulator transcription factor compare
ABIE40_RS15760 -1.6 -5.0 Holliday junction branch migration DNA helicase RuvB compare
ABIE40_RS07480 -1.6 -4.8 DUF2155 domain-containing protein compare
ABIE40_RS05545 -1.6 -2.2 Dabb family protein compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source L-Lysine in Rhizobium sp. OAE497

For carbon source L-Lysine across organisms