Experiment set1IT054 for Rhizobium sp. OAE497

Compare to:

L-Lysine carbon source

200 most detrimental genes:

  gene name fitness t score description  
ABIE40_RS17600 +1.3 3.2 class I SAM-dependent methyltransferase compare
ABIE40_RS05585 +1.2 2.8 head-tail connector protein compare
ABIE40_RS21990 +1.2 1.6 organic hydroperoxide resistance protein compare
ABIE40_RS18440 +1.2 2.1 Trm112 family protein compare
ABIE40_RS03300 +1.2 4.1 phasin compare
ABIE40_RS13705 +1.2 8.0 acyltransferase family protein compare
ABIE40_RS03505 +1.2 2.5 DUF1127 domain-containing protein compare
ABIE40_RS19220 +1.1 5.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABIE40_RS20585 +1.1 1.8 ANTAR domain-containing protein compare
ABIE40_RS17950 +1.1 2.9 tyrosine recombinase XerC compare
ABIE40_RS13375 +1.1 1.2 MarR family transcriptional regulator compare
ABIE40_RS06665 +1.0 6.2 hypothetical protein compare
ABIE40_RS22770 +1.0 2.2 hypothetical protein compare
ABIE40_RS11750 +1.0 3.1 chemotaxis protein CheW compare
ABIE40_RS16505 +1.0 3.4 MaoC family dehydratase compare
ABIE40_RS18805 +1.0 1.7 DUF1328 domain-containing protein compare
ABIE40_RS15460 +1.0 5.5 response regulator compare
ABIE40_RS22755 +1.0 1.6 exopolysaccharide biosynthesis protein compare
ABIE40_RS05895 +1.0 1.4 YciI family protein compare
ABIE40_RS17350 +0.9 3.2 glutaredoxin 3 compare
ABIE40_RS03250 +0.9 1.8 hypothetical protein compare
ABIE40_RS14675 +0.9 2.1 response regulator transcription factor compare
ABIE40_RS16080 +0.9 5.4 hypothetical protein compare
ABIE40_RS18680 +0.9 0.9 hypothetical protein compare
ABIE40_RS17510 +0.9 6.0 3-hydroxybutyryl-CoA dehydrogenase compare
ABIE40_RS30495 +0.9 1.1 LuxR C-terminal-related transcriptional regulator compare
ABIE40_RS11520 +0.9 3.3 DegQ family serine endoprotease compare
ABIE40_RS26260 +0.9 2.0 threonine transporter RhtB compare
ABIE40_RS17310 +0.9 1.3 hypothetical protein compare
ABIE40_RS08745 +0.9 2.6 DUF192 domain-containing protein compare
ABIE40_RS30060 +0.9 3.9 hypothetical protein compare
ABIE40_RS14450 +0.8 1.4 RNA polymerase sigma factor compare
ABIE40_RS22390 +0.8 1.2 cytochrome c compare
ABIE40_RS27865 +0.8 1.1 PepSY domain-containing protein compare
ABIE40_RS03760 +0.8 3.6 pseudouridine synthase compare
ABIE40_RS00675 +0.8 3.4 AlpA family phage regulatory protein compare
ABIE40_RS23665 +0.8 1.6 hypothetical protein compare
ABIE40_RS01945 +0.8 1.5 calcium-binding protein compare
ABIE40_RS15415 +0.8 2.2 tripartite tricarboxylate transporter TctB family protein compare
ABIE40_RS17380 +0.8 4.5 GNAT family N-acetyltransferase compare
ABIE40_RS29890 +0.8 1.3 amino acid ABC transporter ATP-binding protein compare
ABIE40_RS02905 +0.8 1.4 hypothetical protein compare
ABIE40_RS02290 +0.8 5.4 phosphate ABC transporter permease subunit PstC compare
ABIE40_RS30825 +0.8 1.0 cytochrome c oxidase subunit II compare
ABIE40_RS08575 +0.8 1.0 DUF1127 domain-containing protein compare
ABIE40_RS07410 +0.8 3.3 DUF6105 family protein compare
ABIE40_RS14095 +0.8 2.1 30S ribosomal protein S21 compare
ABIE40_RS27160 +0.8 0.9 low affinity iron permease family protein compare
ABIE40_RS13610 +0.8 4.2 MarR family transcriptional regulator compare
ABIE40_RS17385 +0.8 3.7 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABIE40_RS05875 +0.8 2.8 lysylphosphatidylglycerol synthase domain-containing protein compare
ABIE40_RS01185 +0.7 3.5 transporter compare
ABIE40_RS08170 +0.7 1.1 hypothetical protein compare
ABIE40_RS13055 +0.7 4.8 hypothetical protein compare
ABIE40_RS17545 +0.7 1.8 response regulator compare
ABIE40_RS00235 +0.7 3.5 cytochrome c family protein compare
ABIE40_RS05595 +0.7 1.4 DUF3168 domain-containing protein compare
ABIE40_RS08270 +0.7 3.4 GNAT family N-acetyltransferase compare
ABIE40_RS02075 +0.7 4.2 ROK family transcriptional regulator compare
ABIE40_RS07520 +0.7 3.1 metalloregulator ArsR/SmtB family transcription factor compare
ABIE40_RS12385 +0.7 2.3 helix-turn-helix domain-containing protein compare
ABIE40_RS18630 +0.7 5.1 thiamine/thiamine pyrophosphate ABC transporter permease ThiP compare
ABIE40_RS10130 +0.7 1.1 alpha/beta hydrolase compare
ABIE40_RS12395 +0.7 2.3 AlpA family phage regulatory protein compare
ABIE40_RS26670 +0.7 0.8 hypothetical protein compare
ABIE40_RS25920 +0.7 1.7 hydroxyethylthiazole kinase compare
ABIE40_RS26820 +0.7 1.3 DUF982 domain-containing protein compare
ABIE40_RS20060 +0.7 3.5 Gfo/Idh/MocA family oxidoreductase compare
ABIE40_RS05200 +0.7 1.1 hypothetical protein compare
ABIE40_RS06530 +0.7 3.2 NUDIX domain-containing protein compare
ABIE40_RS19825 +0.7 3.7 cytochrome o ubiquinol oxidase subunit III compare
ABIE40_RS24245 +0.7 1.6 helix-turn-helix domain-containing protein compare
ABIE40_RS26740 +0.7 2.6 MgtC/SapB family protein compare
ABIE40_RS06580 +0.7 4.5 exopolyphosphatase compare
ABIE40_RS30455 +0.7 1.5 hypothetical protein compare
ABIE40_RS08850 +0.7 1.2 DUF3597 domain-containing protein compare
ABIE40_RS22100 +0.7 1.3 helix-turn-helix domain-containing protein compare
ABIE40_RS03765 +0.7 3.7 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
ABIE40_RS28875 +0.7 1.4 hypothetical protein compare
ABIE40_RS15240 +0.7 2.1 hypothetical protein compare
ABIE40_RS07740 +0.7 1.2 elongation factor Tu compare
ABIE40_RS17270 +0.7 2.7 S1C family serine protease compare
ABIE40_RS30915 +0.6 1.0 hypothetical protein compare
ABIE40_RS10165 +0.6 3.5 DUF1127 domain-containing protein compare
ABIE40_RS07810 +0.6 2.3 phosphatase PAP2 family protein compare
ABIE40_RS13905 +0.6 0.7 4-hydroxy-tetrahydrodipicolinate reductase compare
ABIE40_RS03870 +0.6 1.3 metalloregulator ArsR/SmtB family transcription factor compare
ABIE40_RS00450 +0.6 2.6 molecular chaperone DnaJ compare
ABIE40_RS29390 +0.6 0.7 hypothetical protein compare
ABIE40_RS08115 +0.6 1.5 hypothetical protein compare
ABIE40_RS17025 +0.6 2.6 exopolysaccharide biosynthesis protein compare
ABIE40_RS26860 +0.6 1.7 response regulator compare
ABIE40_RS02295 +0.6 2.9 phosphate ABC transporter permease PstA compare
ABIE40_RS26040 +0.6 1.8 TetR/AcrR family transcriptional regulator compare
ABIE40_RS30450 +0.6 1.9 DUF3606 domain-containing protein compare
ABIE40_RS03165 +0.6 2.8 sugar ABC transporter permease compare
ABIE40_RS10280 +0.6 1.2 hypothetical protein compare
ABIE40_RS29445 +0.6 2.0 helix-turn-helix transcriptional regulator compare
ABIE40_RS12075 +0.6 2.1 ABC transporter ATP-binding protein compare
ABIE40_RS22805 +0.6 2.4 ATP-binding cassette domain-containing protein compare
ABIE40_RS07515 +0.6 1.7 ribonuclease H compare
ABIE40_RS09060 +0.6 2.5 type II toxin-antitoxin system RatA family toxin compare
ABIE40_RS05515 +0.6 2.0 MmcQ/YjbR family DNA-binding protein compare
ABIE40_RS14465 +0.6 4.0 PAS domain-containing sensor histidine kinase compare
ABIE40_RS15425 +0.6 2.4 sigma-54 dependent transcriptional regulator compare
ABIE40_RS06815 +0.6 3.9 cellulose biosynthesis protein BcsN compare
ABIE40_RS02830 +0.6 3.9 ATP-binding protein compare
ABIE40_RS17060 +0.6 0.9 OsmC family protein compare
ABIE40_RS10185 +0.6 2.2 BolA family transcriptional regulator compare
ABIE40_RS19475 +0.6 3.7 ATP-dependent protease ATPase subunit HslU compare
ABIE40_RS03510 +0.6 2.9 DUF937 domain-containing protein compare
ABIE40_RS26890 +0.6 0.7 DUF983 domain-containing protein compare
ABIE40_RS26445 +0.6 1.3 ribonuclease activity regulator RraA compare
ABIE40_RS01980 +0.6 2.9 anti-sigma factor compare
ABIE40_RS24760 +0.6 1.4 DeoR/GlpR family DNA-binding transcription regulator compare
ABIE40_RS01005 +0.6 0.9 DUF2282 domain-containing protein compare
ABIE40_RS17570 +0.6 2.4 YdcF family protein compare
ABIE40_RS04005 +0.6 2.5 DnaJ C-terminal domain-containing protein compare
ABIE40_RS04850 +0.6 2.5 DUF930 domain-containing protein compare
ABIE40_RS27930 +0.6 0.6 nuclear transport factor 2 family protein compare
ABIE40_RS25100 +0.6 2.5 LysR family transcriptional regulator compare
ABIE40_RS15060 +0.6 1.4 hypothetical protein compare
ABIE40_RS07265 +0.6 2.4 methylmalonyl-CoA epimerase compare
ABIE40_RS14650 +0.6 0.7 urea ABC transporter ATP-binding protein UrtD compare
ABIE40_RS18625 +0.6 4.5 thiamine ABC transporter substrate binding subunit compare
ABIE40_RS09755 +0.6 3.0 alpha/beta fold hydrolase compare
ABIE40_RS28640 +0.6 1.7 flavodoxin family protein compare
ABIE40_RS00345 +0.6 3.2 tRNA pseudouridine(55) synthase TruB compare
ABIE40_RS16210 +0.5 2.8 homospermidine synthase compare
ABIE40_RS23170 +0.5 2.6 adenylate/guanylate cyclase domain-containing protein compare
ABIE40_RS01985 +0.5 1.2 fasciclin domain-containing protein compare
ABIE40_RS08365 +0.5 1.6 hypothetical protein compare
ABIE40_RS22180 +0.5 1.3 putative glycolipid-binding domain-containing protein compare
ABIE40_RS19820 +0.5 4.2 cytochrome o ubiquinol oxidase subunit I compare
ABIE40_RS30705 +0.5 1.0 hypothetical protein compare
ABIE40_RS30690 +0.5 1.4 hypothetical protein compare
ABIE40_RS20930 +0.5 2.5 ABC transporter ATP-binding protein compare
ABIE40_RS21315 +0.5 3.1 TetR/AcrR family transcriptional regulator compare
ABIE40_RS01405 +0.5 2.1 glutathione synthase compare
ABIE40_RS00985 +0.5 1.8 DoxX family protein compare
ABIE40_RS14745 +0.5 1.6 GNAT family N-acetyltransferase compare
ABIE40_RS29240 +0.5 1.2 cold-shock protein compare
ABIE40_RS09120 +0.5 1.4 hypothetical protein compare
ABIE40_RS29850 +0.5 0.9 IS110 family transposase compare
ABIE40_RS08350 +0.5 2.7 inorganic phosphate transporter compare
ABIE40_RS19490 +0.5 3.5 malate synthase G compare
ABIE40_RS29820 +0.5 1.1 hypothetical protein compare
ABIE40_RS17200 +0.5 1.2 endonuclease/exonuclease/phosphatase family protein compare
ABIE40_RS28785 +0.5 0.9 ABC-three component system middle component 1 compare
ABIE40_RS05540 +0.5 3.3 hypothetical protein compare
ABIE40_RS17710 +0.5 3.6 D-alanyl-D-alanine carboxypeptidase family protein compare
ABIE40_RS19215 +0.5 2.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABIE40_RS02810 +0.5 4.4 PAS domain S-box protein compare
ABIE40_RS26005 +0.5 1.9 hypothetical protein compare
ABIE40_RS09535 +0.5 1.7 hypothetical protein compare
ABIE40_RS26705 +0.5 1.9 response regulator compare
ABIE40_RS08285 +0.5 3.1 cysteine synthase A compare
ABIE40_RS10250 +0.5 2.1 cupin domain-containing protein compare
ABIE40_RS27015 +0.5 1.7 ATP-dependent DNA ligase compare
ABIE40_RS12295 +0.5 1.5 hypothetical protein compare
ABIE40_RS26745 +0.5 1.4 hypothetical protein compare
ABIE40_RS22515 +0.5 2.0 TetR/AcrR family transcriptional regulator compare
ABIE40_RS06315 +0.5 1.9 MarR family transcriptional regulator compare
ABIE40_RS06820 +0.5 4.3 UDP-forming cellulose synthase catalytic subunit compare
ABIE40_RS10235 +0.5 1.8 glutaminase compare
ABIE40_RS11535 +0.5 2.4 FtsH protease activity modulator HflK compare
ABIE40_RS22405 +0.5 1.4 GntR family transcriptional regulator compare
ABIE40_RS02070 +0.5 1.1 RbsD/FucU domain-containing protein compare
ABIE40_RS07405 +0.5 2.6 hypothetical protein compare
ABIE40_RS09455 +0.5 1.7 hypothetical protein compare
ABIE40_RS15350 +0.5 2.7 TetR family transcriptional regulator compare
ABIE40_RS14975 +0.5 1.9 acyltransferase compare
ABIE40_RS00040 +0.5 3.5 class I SAM-dependent methyltransferase compare
ABIE40_RS26225 +0.5 0.8 BON domain-containing protein compare
ABIE40_RS17365 +0.5 2.0 Flp family type IVb pilin compare
ABIE40_RS18730 +0.5 1.2 cupin domain-containing protein compare
ABIE40_RS09630 +0.5 2.3 antitoxin MazE family protein compare
ABIE40_RS25195 +0.5 1.3 glycerate kinase compare
ABIE40_RS30910 +0.5 2.4 ubiquinol oxidase subunit II compare
ABIE40_RS00080 +0.5 3.1 Gfo/Idh/MocA family oxidoreductase compare
ABIE40_RS08565 +0.5 2.7 fibrinogen-binding protein compare
ABIE40_RS05190 +0.5 1.7 DUF1491 family protein compare
ABIE40_RS22940 +0.5 2.7 ABC transporter substrate-binding protein compare
ABIE40_RS23500 +0.5 2.0 LysR family transcriptional regulator compare
ABIE40_RS23050 +0.5 2.0 DUF6502 family protein compare
ABIE40_RS17880 +0.5 2.0 DeoR/GlpR family DNA-binding transcription regulator compare
ABIE40_RS18425 +0.5 1.6 P-II family nitrogen regulator compare
ABIE40_RS28045 +0.5 0.4 hypothetical protein compare
ABIE40_RS12620 +0.5 1.9 molybdopterin-binding protein compare
ABIE40_RS15445 +0.5 1.9 CbtA family protein compare
ABIE40_RS11195 +0.5 2.2 LysR family transcriptional regulator compare
ABIE40_RS00130 +0.5 3.6 glucuronate isomerase compare
ABIE40_RS06055 +0.5 0.9 DUF3563 family protein compare
ABIE40_RS16990 +0.5 2.2 HAD family hydrolase compare
ABIE40_RS13200 +0.5 1.4 SRPBCC family protein compare
ABIE40_RS01300 +0.5 2.4 septal ring lytic transglycosylase RlpA family protein compare
ABIE40_RS04885 +0.5 2.4 HIT family protein compare
ABIE40_RS01665 +0.5 1.9 DUF1150 family protein compare
ABIE40_RS11920 +0.5 2.4 lytic transglycosylase domain-containing protein compare
ABIE40_RS03520 +0.5 3.2 16S rRNA (uracil(1498)-N(3))-methyltransferase compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source L-Lysine in Rhizobium sp. OAE497

For carbon source L-Lysine across organisms