Experiment set1IT054 for Serratia liquefaciens MT49

Compare to:

Nickel (II) chloride hexahydrate 80 uM, aerobic

200 most important genes:

  gene name fitness t score description  
IAI46_08185 -4.6 -4.3 imidazole glycerol phosphate synthase subunit HisF compare
IAI46_01200 -4.4 -3.0 tRNA-Thr compare
IAI46_01745 -3.4 -2.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI46_05375 -3.3 -2.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI46_11340 -2.9 -4.0 transcriptional regulator SlyA compare
IAI46_08190 -2.9 -5.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI46_08195 -2.8 -5.2 imidazole glycerol phosphate synthase subunit HisH compare
IAI46_08200 -2.8 -5.7 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI46_15505 -2.7 -1.8 type 1 fimbrial protein compare
IAI46_24770 -2.6 -4.4 polysaccharide deacetylase family protein compare
IAI46_08215 -2.6 -5.2 ATP phosphoribosyltransferase compare
IAI46_08635 -2.6 -7.8 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI46_08210 -2.5 -6.3 histidinol dehydrogenase compare
IAI46_03190 -2.4 -9.5 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI46_09740 -2.4 -6.6 dihydroorotase compare
IAI46_19560 -2.3 -6.3 elongation factor 4 compare
IAI46_18865 -2.3 -1.9 E3 ubiquitin--protein ligase compare
IAI46_18770 -2.3 -5.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI46_20900 -2.3 -7.8 phosphoglycerate dehydrogenase compare
IAI46_21325 -2.3 -3.4 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI46_08205 -2.3 -6.7 histidinol-phosphate transaminase compare
IAI46_22590 -2.2 -1.5 ribosome-associated protein compare
IAI46_25195 -2.1 -2.0 phosphate signaling complex protein PhoU compare
IAI46_01365 -2.1 -11.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI46_02940 -2.1 -7.9 phosphoserine phosphatase compare
IAI46_08805 -2.1 -5.4 quinone-dependent dihydroorotate dehydrogenase compare
IAI46_18750 -2.1 -2.9 YpfN family protein compare
IAI46_24755 -2.0 -7.8 O-antigen ligase family protein compare
IAI46_24705 -2.0 -2.2 rhodanese-like domain-containing protein compare
IAI46_08180 -2.0 -4.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI46_23240 -2.0 -5.3 shikimate dehydrogenase compare
IAI46_18145 -2.0 -2.1 hypothetical protein compare
IAI46_03195 -2.0 -12.8 carbamoyl-phosphate synthase large subunit compare
IAI46_24845 -2.0 -8.1 orotate phosphoribosyltransferase compare
IAI46_06275 -2.0 -2.9 2-oxoglutarate dehydrogenase E1 component compare
IAI46_08640 -1.9 -7.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
IAI46_21210 -1.9 -4.8 RNA polymerase-binding protein DksA compare
IAI46_19600 -1.9 -5.5 ATP-dependent RNA helicase SrmB compare
IAI46_20730 -1.9 -2.5 site-specific tyrosine recombinase XerD compare
IAI46_01360 -1.8 -10.1 phosphoribosylamine--glycine ligase compare
IAI46_03840 -1.8 -3.9 recombinase RecA compare
IAI46_18465 -1.8 -1.6 PTS glucose transporter subunit IIA compare
IAI46_24665 -1.7 -4.7 envelope stress sensor histidine kinase CpxA compare
IAI46_24760 -1.7 -4.1 glycosyltransferase compare
IAI46_00735 -1.7 -7.1 DNA helicase II compare
IAI46_25260 -1.6 -4.0 membrane protein insertion efficiency factor YidD compare
IAI46_19765 -1.6 -1.6 hypothetical protein compare
IAI46_17110 -1.6 -2.6 ABC transporter substrate-binding protein compare
IAI46_23700 -1.6 -4.4 3-dehydroquinate synthase compare
IAI46_10145 -1.6 -2.6 hypothetical protein compare
IAI46_24750 -1.5 -3.2 glycosyltransferase compare
IAI46_24645 -1.5 -6.0 6-phosphofructokinase compare
IAI46_23690 -1.5 -2.0 adenine-specific DNA-methyltransferase compare
IAI46_19260 -1.5 -5.2 outer membrane protein assembly factor BamB compare
IAI46_07290 -1.5 -2.1 NUDIX hydrolase compare
IAI46_02275 -1.5 -5.9 aspartate carbamoyltransferase compare
IAI46_19475 -1.5 -10.4 phosphoribosylformylglycinamidine synthase compare
IAI46_08130 -1.5 -2.2 ABC transporter ATP-binding protein compare
IAI46_24955 -1.5 -5.6 nitrogen regulation protein NR(II) compare
IAI46_18025 -1.5 -5.0 chorismate synthase compare
IAI46_03600 -1.5 -10.1 GTP diphosphokinase compare
IAI46_23685 -1.5 -1.7 ribulose-phosphate 3-epimerase compare
IAI46_02320 -1.4 -5.7 ornithine carbamoyltransferase compare
IAI46_24960 -1.4 -5.2 nitrogen regulation protein NR(I) compare
IAI46_07980 -1.3 -2.1 dCTP deaminase compare
IAI46_14810 -1.3 -3.0 PTS mannose transporter subunit IIAB compare
IAI46_08535 -1.3 -3.7 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI46_01650 -1.3 -1.3 adenylosuccinate synthase compare
IAI46_13915 -1.3 -2.7 orotidine-5'-phosphate decarboxylase compare
IAI46_22745 -1.3 -1.3 type II 3-dehydroquinate dehydratase compare
IAI46_05370 -1.3 -4.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI46_17810 -1.3 -7.3 amidophosphoribosyltransferase compare
IAI46_01940 -1.3 -1.2 30S ribosome-binding factor RbfA compare
IAI46_13310 -1.3 -2.3 carboxypeptidase M32 compare
IAI46_18340 -1.3 -2.0 Fe(3+)-siderophore ABC transporter permease compare
IAI46_18885 -1.2 -4.4 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI46_05015 -1.2 -4.2 ATP-dependent protease ATP-binding subunit ClpX compare
IAI46_11030 -1.2 -2.5 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
IAI46_10025 -1.2 -2.0 DUF4377 domain-containing protein compare
IAI46_17840 -1.2 -4.5 tRNA pseudouridine(38-40) synthase TruA compare
IAI46_06015 -1.2 -2.6 PhoH family protein compare
IAI46_21655 -1.2 -2.5 hypothetical protein compare
IAI46_11755 -1.2 -2.2 carbohydrate kinase family protein compare
IAI46_00725 -1.1 -1.7 tyrosine recombinase XerC compare
IAI46_02875 -1.1 -5.0 peptide chain release factor 3 compare
IAI46_09645 -1.1 -2.1 YeeE/YedE family protein compare
IAI46_07400 -1.1 -3.8 transcriptional regulator compare
IAI46_11320 -1.1 -2.7 superoxide dismutase family protein compare
IAI46_18670 -1.1 -1.7 ferredoxin-type protein NapF compare
IAI46_24945 -1.1 -1.8 ribosome-dependent GTPase TypA compare
IAI46_10795 -1.1 -2.2 RNA chaperone ProQ compare
IAI46_00610 -1.1 -1.4 dTDP-glucose 4,6-dehydratase compare
IAI46_14540 -1.1 -2.4 Slp family lipoprotein compare
IAI46_08555 -1.1 -4.0 leucine-responsive transcriptional regulator Lrp compare
IAI46_11080 -1.1 -2.6 ABC transporter substrate-binding protein compare
IAI46_03960 -1.1 -5.6 bifunctional chorismate mutase/prephenate dehydrogenase compare
IAI46_24505 -1.0 -6.6 argininosuccinate synthase compare
IAI46_09175 -1.0 -1.7 NAD(P)/FAD-dependent oxidoreductase compare
IAI46_24950 -1.0 -1.0 glutamate--ammonia ligase compare
IAI46_03035 -1.0 -5.6 homoserine kinase compare
IAI46_18790 -1.0 -2.6 thioredoxin-dependent thiol peroxidase compare
IAI46_17675 -1.0 -2.2 NADH-quinone oxidoreductase subunit NuoI compare
IAI46_24500 -1.0 -5.5 argininosuccinate lyase compare
IAI46_14820 -1.0 -2.8 PTS mannose transporter subunit IID compare
IAI46_13935 -1.0 -1.4 LapA family protein compare
IAI46_14050 -1.0 -2.3 BON domain-containing protein compare
IAI46_25250 -1.0 -2.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI46_08035 -1.0 -2.9 oligosaccharide flippase family protein compare
IAI46_17755 -1.0 -2.2 phosphate acetyltransferase compare
IAI46_23090 -1.0 -6.9 glucose-6-phosphate isomerase compare
IAI46_12840 -1.0 -2.7 hydroxyacid dehydrogenase compare
IAI46_01970 -0.9 -2.9 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI46_18890 -0.9 -3.8 phosphoribosylglycinamide formyltransferase compare
IAI46_15990 -0.9 -1.9 flagellar protein FlhE compare
IAI46_20455 -0.9 -1.3 RNA pyrophosphohydrolase compare
IAI46_20595 -0.9 -1.3 hypothetical protein compare
IAI46_18820 -0.9 -1.1 Lrp/AsnC family transcriptional regulator compare
IAI46_04890 -0.9 -3.4 transcriptional regulator NrdR compare
IAI46_06145 -0.9 -3.6 alpha-D-glucose phosphate-specific phosphoglucomutase compare
IAI46_08010 -0.9 -4.8 polysaccharide export protein compare
IAI46_13165 -0.9 -1.9 glutamine amidotransferase compare
IAI46_10285 -0.9 -1.6 peptide chain release factor N(5)-glutamine methyltransferase compare
IAI46_12725 -0.9 -1.2 TetR/AcrR family transcriptional regulator compare
IAI46_15250 -0.9 -1.9 hypothetical protein compare
IAI46_13765 -0.9 -2.4 hypothetical protein compare
IAI46_19725 -0.9 -1.6 hypothetical protein compare
IAI46_08530 -0.9 -2.0 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI46_17925 -0.9 -2.4 copper resistance protein compare
IAI46_25110 -0.9 -2.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI46_11195 -0.9 -1.1 tRNA-Val compare
IAI46_01030 -0.9 -4.0 HTH-type transcriptional regulator MetR compare
IAI46_24985 -0.9 -4.2 DNA polymerase I compare
IAI46_20270 -0.9 -1.4 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI46_05200 -0.9 -3.0 DsrE family protein compare
IAI46_19280 -0.9 -1.9 cytoskeleton protein RodZ compare
IAI46_17515 -0.8 -2.4 2Fe-2S ferredoxin-like protein compare
IAI46_13920 -0.8 -1.8 DUF1471 domain-containing protein compare
IAI46_09235 -0.8 -2.2 hypothetical protein compare
IAI46_08795 -0.8 -2.1 sulfonate ABC transporter substrate-binding protein compare
IAI46_12600 -0.8 -2.1 hypothetical protein compare
IAI46_24525 -0.8 -5.5 phosphoenolpyruvate carboxylase compare
IAI46_05010 -0.8 -1.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
IAI46_05905 -0.8 -1.5 lipoyl(octanoyl) transferase LipB compare
IAI46_09505 -0.8 -1.3 hypothetical protein compare
IAI46_04605 -0.8 -4.1 class I SAM-dependent methyltransferase compare
IAI46_19640 -0.8 -3.6 outer membrane protein assembly factor BamE compare
IAI46_22350 -0.8 -5.1 glutamate synthase small subunit compare
IAI46_08990 -0.8 -2.6 hypothetical protein compare
IAI46_15645 -0.8 -1.8 ABC transporter permease compare
IAI46_12425 -0.8 -2.1 LysR family transcriptional regulator compare
IAI46_24510 -0.8 -4.7 acetylglutamate kinase compare
IAI46_10575 -0.8 -1.1 hypothetical protein compare
IAI46_18665 -0.8 -2.5 chaperone NapD compare
IAI46_22540 -0.8 -2.1 DUF4312 family protein compare
IAI46_07450 -0.8 -0.9 Lrp/AsnC family transcriptional regulator compare
IAI46_23280 -0.8 -0.8 Trk system potassium transporter TrkA compare
IAI46_18040 -0.8 -1.8 phosphohistidine phosphatase SixA compare
IAI46_03040 -0.8 -3.5 threonine synthase compare
IAI46_19360 -0.8 -2.0 Fe-S cluster assembly transcriptional regulator IscR compare
IAI46_18460 -0.8 -2.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI46_03985 -0.8 -4.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI46_22470 -0.8 -0.7 RNA polymerase factor sigma-54 compare
IAI46_05915 -0.8 -4.7 D-alanyl-D-alanine carboxypeptidase DacA compare
IAI46_04285 -0.8 -1.4 hydroxyisourate hydrolase compare
IAI46_24690 -0.8 -3.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
IAI46_03725 -0.8 -3.2 adenylyl-sulfate kinase compare
IAI46_10155 -0.7 -1.5 DUF2024 family protein compare
IAI46_08160 -0.7 -1.0 NADP-dependent phosphogluconate dehydrogenase compare
IAI46_24975 -0.7 -2.3 Der GTPase-activating protein YihI compare
IAI46_19915 -0.7 -0.8 DUF1289 domain-containing protein compare
IAI46_09690 -0.7 -1.8 YceI family protein compare
IAI46_18015 -0.7 -2.7 TSUP family transporter compare
IAI46_03025 -0.7 -1.6 thr operon leader peptide compare
IAI46_06290 -0.7 -1.9 succinate--CoA ligase subunit alpha compare
IAI46_16115 -0.7 -2.5 CoA ester lyase compare
IAI46_08025 -0.7 -2.1 acylneuraminate cytidylyltransferase family protein compare
IAI46_00015 -0.7 -4.1 DNA replication/repair protein RecF compare
IAI46_07625 -0.7 -1.2 hypothetical protein compare
IAI46_07870 -0.7 -1.6 hypothetical protein compare
IAI46_06505 -0.7 -1.2 6-phosphogluconolactonase compare
IAI46_12330 -0.7 -0.8 GNAT family N-acetyltransferase compare
IAI46_09935 -0.7 -1.5 helix-turn-helix domain-containing protein compare
IAI46_21415 -0.7 -3.7 pyrroline-5-carboxylate reductase compare
IAI46_07200 -0.7 -3.1 FMNH2-dependent alkanesulfonate monooxygenase compare
IAI46_01625 -0.7 -3.4 RNA chaperone Hfq compare
IAI46_10230 -0.7 -1.9 TetR/AcrR family transcriptional regulator compare
IAI46_18445 -0.7 -2.8 cysteine synthase A compare
IAI46_11335 -0.7 -1.6 DUF1656 domain-containing protein compare
IAI46_16475 -0.7 -1.5 cupin domain-containing protein compare
IAI46_14555 -0.7 -1.5 RidA family protein compare
IAI46_11435 -0.7 -2.8 benzoate/H(+) symporter BenE family transporter compare
IAI46_16355 -0.7 -1.7 1,2-phenylacetyl-CoA epoxidase subunit B compare
IAI46_05335 -0.7 -2.4 co-chaperone YbbN compare
IAI46_22345 -0.7 -6.1 glutamate synthase large subunit compare
IAI46_22335 -0.7 -4.3 aerobic respiration two-component sensor histidine kinase ArcB compare
IAI46_11900 -0.7 -2.4 PTS glucose transporter subunit IIA compare
IAI46_12160 -0.7 -2.6 hypothetical protein compare
IAI46_12420 -0.7 -1.8 aldehyde dehydrogenase family protein compare
IAI46_20165 -0.7 -1.2 thioredoxin family protein compare
IAI46_09460 -0.7 -1.6 phenylalanyl-tRNA synthetase subunit beta compare


Specific Phenotypes

None in this experiment

For Serratia liquefaciens MT49 in stress experiments

For stress Nickel (II) chloride hexahydrate across organisms