Experiment set1IT054 for Enterobacter asburiae PDN3

Compare to:

M9 with casamino acids and trichloroethylene 76.3 uM

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_0932 -4.7 -5.5 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
EX28DRAFT_2252 -4.5 -2.9 TolA protein compare
EX28DRAFT_2265 -4.5 -2.2 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_0046 -4.2 -4.0 shikimate dehydrogenase compare
EX28DRAFT_0933 -3.8 -15.9 tryptophan synthase, beta subunit compare
EX28DRAFT_3285 -3.7 -7.1 malate dehydrogenase (NAD) (EC 1.1.1.37) compare
EX28DRAFT_3419 -3.6 -12.8 Fructose-1,6-bisphosphatase compare
EX28DRAFT_2045 -3.4 -1.2 thiol reductant ABC exporter, CydD subunit compare
EX28DRAFT_2046 -3.3 -2.9 thiol reductant ABC exporter, CydC subunit compare
EX28DRAFT_4156 -3.1 -3.3 ribulose-phosphate 3-epimerase compare
EX28DRAFT_0331 -3.1 -4.2 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_0292 -3.1 -4.0 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_0092 -3.0 -2.0 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_3336 -2.9 -13.2 aspartate ammonia-lyase compare
EX28DRAFT_3646 -2.8 -5.6 4-hydroxythreonine-4-phosphate dehydrogenase compare
EX28DRAFT_0934 -2.8 -11.5 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_4153 -2.8 -3.7 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_1706 -2.7 -10.6 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
EX28DRAFT_0935 -2.6 -6.3 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
EX28DRAFT_0769 -2.6 -1.9 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF compare
EX28DRAFT_2264 -2.6 -10.6 succinyl-CoA synthetase, beta subunit compare
EX28DRAFT_2267 -2.5 -5.8 succinate dehydrogenase and fumarate reductase iron-sulfur protein compare
EX28DRAFT_0936 -2.5 -7.1 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_0111 -2.5 -2.9 FeS cluster assembly scaffold IscU compare
EX28DRAFT_2531 -2.4 -4.2 endopeptidase La compare
EX28DRAFT_0494 -2.4 -2.5 Protein-tyrosine-phosphatase compare
EX28DRAFT_3710 -2.3 -7.3 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_2269 -2.3 -6.3 succinate dehydrogenase, hydrophobic membrane anchor protein compare
EX28DRAFT_4544 -2.2 -2.4 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_2268 -2.2 -5.7 succinate dehydrogenase subunit A (EC 1.3.5.1) compare
EX28DRAFT_0323 -2.2 -5.7 NADH (or F420H2) dehydrogenase, subunit C compare
EX28DRAFT_0167 -2.2 -2.4 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
EX28DRAFT_0284 -2.2 -9.0 Phosphoglycerate dehydrogenase and related dehydrogenases compare
EX28DRAFT_0330 -2.1 -2.9 NADH:ubiquinone oxidoreductase subunit 6 (chain J) compare
EX28DRAFT_3711 -2.0 -1.8 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_2027 -2.0 -3.0 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_1620 -2.0 -1.9 hypothetical protein compare
EX28DRAFT_0972 -2.0 -2.0 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_4318 -2.0 -3.5 Glucose-6-phosphate isomerase compare
EX28DRAFT_0334 -1.9 -2.5 proton-translocating NADH-quinone oxidoreductase, chain N compare
EX28DRAFT_0322 -1.9 -7.9 NADH-quinone oxidoreductase, B subunit compare
EX28DRAFT_4507 -1.9 -2.5 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
EX28DRAFT_2259 -1.9 -4.0 Cytochrome bd-type quinol oxidase, subunit 1 compare
EX28DRAFT_2270 -1.8 -1.3 succinate dehydrogenase subunit C (EC 1.3.5.1) compare
EX28DRAFT_3079 -1.8 -1.1 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0329 -1.8 -7.5 NADH-quinone oxidoreductase, chain I compare
EX28DRAFT_0328 -1.8 -1.8 NADH:ubiquinone oxidoreductase subunit 1 (chain H) compare
EX28DRAFT_2958 -1.8 -1.5 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_0132 -1.7 -4.5 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_3879 -1.7 -3.5 Glycosyltransferase compare
EX28DRAFT_0325 -1.7 -6.3 NADH-quinone oxidoreductase, F subunit compare
EX28DRAFT_0332 -1.7 -8.1 proton-translocating NADH-quinone oxidoreductase, chain L compare
EX28DRAFT_2263 -1.7 -2.9 succinyl-CoA synthetase, alpha subunit compare
EX28DRAFT_3675 -1.6 -6.5 transcriptional regulator, LacI family compare
EX28DRAFT_4386 -1.6 -2.0 Signal transduction histidine kinase compare
EX28DRAFT_3647 -1.6 -5.1 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_0327 -1.6 -6.3 NADH-quinone oxidoreductase, chain G compare
EX28DRAFT_0333 -1.6 -5.1 proton-translocating NADH-quinone oxidoreductase, chain M compare
EX28DRAFT_3611 -1.5 -1.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
EX28DRAFT_0948 -1.5 -1.7 hypothetical protein compare
EX28DRAFT_1609 -1.5 -10.2 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region/hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region compare
EX28DRAFT_2258 -1.5 -2.3 cytochrome d oxidase, subunit II (cydB) compare
EX28DRAFT_0531 -1.4 -6.2 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_1841 -1.4 -1.0 Predicted metal-binding, possibly nucleic acid-binding protein compare
EX28DRAFT_2539 -1.4 -4.9 cytochrome o ubiquinol oxidase subunit II compare
EX28DRAFT_1839 -1.4 -4.5 phosphate:acyl-[acyl carrier protein] acyltransferase compare
EX28DRAFT_0291 -1.3 -2.0 Uncharacterized membrane protein, required for colicin V production compare
EX28DRAFT_1059 -1.3 -2.1 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog compare
EX28DRAFT_2945 -1.3 -1.6 tyrosine recombinase XerD compare
EX28DRAFT_2948 -1.3 -5.4 Uncharacterized conserved protein compare
EX28DRAFT_1932 -1.3 -3.0 Mg/Co/Ni transporter MgtE (contains CBS domain) compare
EX28DRAFT_3449 -1.3 -2.1 Predicted membrane protein compare
EX28DRAFT_2250 -1.3 -2.3 peptidoglycan-associated lipoprotein compare
EX28DRAFT_3311 -1.2 -1.1 ribosomal protein L11 methyltransferase compare
EX28DRAFT_2008 -1.2 -6.1 Aspartate/tyrosine/aromatic aminotransferase compare
EX28DRAFT_4341 -1.2 -2.7 Protein-disulfide isomerase compare
EX28DRAFT_4425 -1.2 -5.5 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
EX28DRAFT_2424 -1.2 -3.5 transcriptional regulator, TetR family compare
EX28DRAFT_2957 -1.2 -3.6 glycine cleavage system T protein compare
EX28DRAFT_0272 -1.2 -1.4 phosphohistidine phosphatase, SixA compare
EX28DRAFT_0861 -1.1 -4.8 Response regulator receiver domain compare
EX28DRAFT_4123 -1.1 -2.5 transcriptional regulator, DeoR family compare
EX28DRAFT_1293 -1.1 -0.9 hypothetical protein compare
EX28DRAFT_4269 -1.1 -1.1 SOS regulatory protein LexA compare
EX28DRAFT_4479 -1.1 -1.6 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0545 -1.1 -3.3 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_2540 -1.1 -3.3 cytochrome o ubiquinol oxidase, subunit I compare
EX28DRAFT_4475 -1.1 -3.0 Adenylate cyclase compare
EX28DRAFT_0593 -1.1 -7.8 DNA-methyltransferase (dcm) compare
EX28DRAFT_1596 -1.1 -0.8 Protein of unknown function (DUF1019) compare
EX28DRAFT_1692 -1.1 -1.1 Biofilm development protein YmgB/AriR compare
EX28DRAFT_0374 -1.1 -1.4 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0324 -1.1 -1.5 NADH-quinone oxidoreductase, E subunit compare
EX28DRAFT_3369 -1.1 -0.9 RNA chaperone Hfq compare
EX28DRAFT_0001 -1.1 -2.5 Elongation factor Tu domain 2/Elongation factor Tu C-terminal domain compare
EX28DRAFT_0970 -1.0 -4.2 ABC-type antimicrobial peptide transport system, ATPase component compare
EX28DRAFT_0757 -1.0 -2.7 septum site-determining protein MinD compare
EX28DRAFT_1300 -1.0 -1.3 hypothetical protein compare
EX28DRAFT_1295 -1.0 -1.2 Protein of unknown function (DUF2570) compare
EX28DRAFT_0693 -1.0 -0.8 DNA-binding regulatory protein, YebC/PmpR family compare
EX28DRAFT_0395 -1.0 -4.2 1-phosphofructokinase compare
EX28DRAFT_2845 -1.0 -1.8 Protein of unknown function (DUF3561) compare
EX28DRAFT_0312 -1.0 -2.7 phosphate acetyltransferase compare
EX28DRAFT_1719 -1.0 -1.0 integration host factor, alpha subunit compare
EX28DRAFT_0901 -1.0 -1.1 hypothetical protein compare
EX28DRAFT_0038 -0.9 -1.4 K+ transport systems, NAD-binding component compare
EX28DRAFT_4271 -0.9 -0.8 glycerol-3-phosphate acyltransferase (EC 2.3.1.15) compare
EX28DRAFT_3883 -0.9 -2.4 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_4042 -0.9 -1.4 Protein of unknown function (DUF2629) compare
EX28DRAFT_2425 -0.9 -1.1 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1414 -0.9 -1.2 phenylacetate degradation probable enoyl-CoA hydratase paaB compare
EX28DRAFT_0392 -0.9 -1.1 hypothetical protein compare
EX28DRAFT_1438 -0.9 -1.8 Transcriptional regulators compare
EX28DRAFT_2472 -0.9 -0.6 Membrane protein implicated in regulation of membrane protease activity compare
EX28DRAFT_2532 -0.9 -1.3 RNA compare
EX28DRAFT_0523 -0.9 -1.0 Glycosyltransferase like family 2 compare
EX28DRAFT_2222 -0.9 -3.5 formiminoglutamase (EC 3.5.3.8) compare
EX28DRAFT_3002 -0.9 -1.6 triphosphoribosyl-dephospho-CoA synthase CitG compare
EX28DRAFT_2075 -0.8 -2.0 type II secretion system protein H compare
EX28DRAFT_1825 -0.8 -1.4 uncharacterized proteobacterial lipoprotein compare
EX28DRAFT_1335 -0.8 -2.2 Putative threonine efflux protein compare
EX28DRAFT_3375 -0.8 -0.8 transcriptional regulator, BadM/Rrf2 family compare
EX28DRAFT_0313 -0.8 -3.5 acetate kinase compare
EX28DRAFT_3614 -0.8 -4.5 aspartate kinase (EC 2.7.2.4) compare
EX28DRAFT_4380 -0.8 -0.8 Protein of unknown function (DUF1471) compare
EX28DRAFT_0706 -0.8 -1.7 Entner-Doudoroff aldolase compare
EX28DRAFT_4273 -0.8 -1.6 carbohydrate kinase, thermoresistant glucokinase family compare
EX28DRAFT_4121 -0.8 -2.2 Rhodanese-related sulfurtransferase compare
EX28DRAFT_4362 -0.8 -3.3 transcriptional regulator, DeoR family compare
EX28DRAFT_0713 -0.8 -1.9 Uncharacterized protein, homolog of Cu resistance protein CopC compare
EX28DRAFT_1382 -0.8 -1.2 transcriptional regulator, TetR family compare
EX28DRAFT_0579 -0.8 -1.1 Uncharacterized protein conserved in bacteria (DUF2256) compare
EX28DRAFT_2546 -0.8 -3.1 2-dehydropantoate 2-reductase compare
EX28DRAFT_2708 -0.8 -1.2 Protein of unknown function (DUF2946) compare
EX28DRAFT_3956 -0.8 -1.6 hypothetical protein compare
EX28DRAFT_3736 -0.8 -0.8 2'-5' RNA ligase compare
EX28DRAFT_2851 -0.8 -2.2 phosphoadenosine phosphosulfate reductase, thioredoxin dependent compare
EX28DRAFT_3616 -0.7 -2.0 threonine synthase compare
EX28DRAFT_0922 -0.7 -1.1 TonB family C-terminal domain compare
EX28DRAFT_0081 -0.7 -2.7 DNA replication and repair protein RecO compare
EX28DRAFT_2543 -0.7 -3.0 protoheme IX farnesyltransferase compare
EX28DRAFT_2589 -0.7 -0.6 Sigma-S stabilisation anti-adaptor protein compare
EX28DRAFT_1308 -0.7 -1.0 hypothetical protein compare
EX28DRAFT_2100 -0.7 -1.7 Putative bacterial sensory transduction regulator compare
EX28DRAFT_3252 -0.7 -1.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family compare
EX28DRAFT_3089 -0.7 -0.7 Transcriptional regulators compare
EX28DRAFT_2974 -0.7 -3.0 transketolase, bacterial and yeast compare
EX28DRAFT_0165 -0.7 -2.5 exopolyphosphatase compare
EX28DRAFT_2262 -0.7 -3.1 Transcriptional regulators compare
EX28DRAFT_3418 -0.7 -0.7 Bacterial regulatory helix-turn-helix protein, lysR family compare
EX28DRAFT_0434 -0.7 -0.9 hypothetical protein compare
EX28DRAFT_4348 -0.7 -1.4 oxygen-independent coproporphyrinogen III oxidase compare
EX28DRAFT_2955 -0.7 -5.3 glycine dehydrogenase (decarboxylating) compare
EX28DRAFT_3901 -0.7 -3.8 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
EX28DRAFT_3281 -0.7 -4.9 Predicted ATPase compare
EX28DRAFT_4061 -0.7 -2.2 NADPH-glutathione reductase (EC 1.8.1.7) compare
EX28DRAFT_0321 -0.7 -0.6 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
EX28DRAFT_2836 -0.7 -1.5 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1986 -0.7 -0.7 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_1128 -0.7 -0.9 hypothetical protein compare
EX28DRAFT_2664 -0.6 -2.2 NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit compare
EX28DRAFT_0779 -0.6 -1.6 hypothetical protein compare
EX28DRAFT_0411 -0.6 -3.3 Uncharacterized membrane protein compare
EX28DRAFT_3440 -0.6 -1.3 trehalose operon repressor, proteobacterial compare
EX28DRAFT_2544 -0.6 -3.1 Arabinose efflux permease compare
EX28DRAFT_0166 -0.6 -3.7 polyphosphate kinase 1 compare
EX28DRAFT_0058 -0.6 -2.1 23S compare
EX28DRAFT_3444 -0.6 -3.0 reactive intermediate/imine deaminase compare
EX28DRAFT_2753 -0.6 -1.1 Rhodanese-related sulfurtransferase compare
EX28DRAFT_4459 -0.6 -3.1 TDP-4-keto-6-deoxy-D-glucose transaminase compare
EX28DRAFT_2677 -0.6 -0.6 hypothetical protein compare
EX28DRAFT_0069 -0.6 -0.9 Superfamily II DNA and RNA helicases compare
EX28DRAFT_3708 -0.6 -0.8 Transcriptional regulators compare
EX28DRAFT_1478 -0.6 -0.9 Pili and flagellar-assembly chaperone, PapD N-terminal domain compare
EX28DRAFT_2541 -0.6 -0.7 cytochrome o ubiquinol oxidase, subunit III compare
EX28DRAFT_3487 -0.6 -1.8 hypothetical protein compare
EX28DRAFT_3390 -0.6 -1.6 FKBP-type peptidyl-prolyl cis-trans isomerases 1 compare
EX28DRAFT_2509 -0.6 -1.5 transcriptional regulator, LacI family compare
EX28DRAFT_4018 -0.6 -1.1 Flavodoxins compare
EX28DRAFT_1385 -0.6 -1.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
EX28DRAFT_1260 -0.6 -1.2 hypothetical protein compare
EX28DRAFT_4158 -0.6 -2.0 tryptophanyl-tRNA synthetase (EC 6.1.1.2) compare
EX28DRAFT_2272 -0.6 -3.1 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_4347 -0.6 -0.4 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1941 -0.6 -0.9 Protein of unknown function (DUF4089) compare
EX28DRAFT_1873 -0.6 -1.3 Protein of unknown function (DUF2770) compare
EX28DRAFT_3058 -0.6 -1.3 Signal transduction histidine kinase compare
EX28DRAFT_3212 -0.6 -2.7 Lipoprotein NlpI, contains TPR repeats compare
EX28DRAFT_3282 -0.6 -0.6 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2585 -0.6 -0.8 pyrroline-5-carboxylate reductase compare
EX28DRAFT_4191 -0.6 -1.4 small GTP-binding protein domain compare
EX28DRAFT_1570 -0.6 -1.3 hypothetical protein compare
EX28DRAFT_0362 -0.6 -3.4 Membrane-associated lipoprotein involved in thiamine biosynthesis compare
EX28DRAFT_2805 -0.6 -2.6 Transcriptional regulators compare
EX28DRAFT_3096 -0.6 -0.8 Hydrogenase/urease accessory protein compare
EX28DRAFT_2214 -0.6 -1.0 malonyl-acyl carrier protein O-methyltransferase BioC compare
EX28DRAFT_1121 -0.6 -0.9 Sugar kinases, ribokinase family compare
EX28DRAFT_0002 -0.6 -1.7 Bacterioferritin-associated ferredoxin compare
EX28DRAFT_4327 -0.6 -1.8 transcriptional regulator, IclR family compare
EX28DRAFT_3110 -0.6 -1.3 phage contractile tail tube protein, P2 family compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in stress experiments

For stress casamino acids across organisms