Experiment set1IT054 for Escherichia coli BL21

Compare to:

NophageControl

200 most important genes:

  gene name fitness t score description  
ECD_03685 -6.5 -6.3 diaminopimelate epimerase compare
ECD_02507 -3.7 -3.7 toxic UPF0083 family protein inhibitor of 70S ribosome formation compare
ECD_01162 -3.5 -2.8 fatty acid metabolism regulon transcriptional regulator compare
ECD_03571 -3.5 -1.6 DUF1375 family outer membrane protein compare
ECD_01370 -3.1 -2.3 aldehyde dehydrogenase A, NAD-linked compare
ECD_02399 -2.7 -4.0 GMP synthetase (glutamine aminotransferase) compare
ECD_02726 -2.7 -7.3 site-specific tyrosine recombinase compare
ECD_03625 -2.5 -7.5 5-methylaminomethyl-2-thiouridine modification at tRNA U34 compare
ECD_02765 -2.3 -5.6 transketolase 1, thiamine triphosphate-binding compare
ECD_03037 -2.1 -4.8 ribosome maturation factor for 30S subunits compare
ECD_03067 -2.1 -1.4 RNA polymerase, sigma 54 (sigma N) factor compare
ECD_04038 -2.0 -2.1 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase compare
ECD_03687 -2.0 -2.1 site-specific tyrosine recombinase compare
ECD_02549 -1.9 -9.8 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor compare
ECD_00165 -1.9 -4.9 uridylyltransferase compare
ECD_00014 -1.8 -2.5 chaperone Hsp70, with co-chaperone DnaJ compare
ECD_01250 -1.8 -2.4 DNA topoisomerase I, omega subunit compare
ECD_00684 -1.8 -3.6 succinate dehydrogenase, FeS subunit compare
ECD_00933 -1.7 -5.2 outer membrane porin 1a (Ia compare
ECD_00018 -1.6 -2.6 sodium-proton antiporter compare
ECD_00765 -1.6 -2.2 DUF1768 family protein compare
ECD_03897 -1.6 -6.4 glucosephosphate isomerase compare
ECD_03064 -1.6 -2.0 periplasmic membrane-anchored LPS-binding protein; LPS export protein compare
ECD_03645 -1.5 -2.9 ilvG operon leader peptide compare
ECD_02207 -1.5 -4.1 NADH:ubiquinone oxidoreductase, membrane subunit H compare
ECD_02057 -1.5 -2.2 putative membrane protein compare
ECD_t00077 -1.5 -1.7 tRNA-Thr compare
ECD_01876 -1.5 -3.7 UPF0149 family protein compare
ECD_02736 -1.5 -3.8 glycine cleavage complex lipoylprotein compare
ECD_01223 -1.5 -3.3 cardiolipin synthase 1 compare
ECD_00941 -1.5 -1.7 NAD(P)H-dependent FMN reductase compare
ECD_03238 -1.5 -3.4 D-ribulose-5-phosphate 3-epimerase compare
ECD_03075 -1.4 -6.9 aerobic respiration control sensor histidine protein kinase, cognate to two-component response regulators ArcA and RssB compare
ECD_01080 -1.4 -3.8 endoribonuclease; RNA-binding protein compare
ECD_02459 -1.4 -2.8 gap repair protein compare
ECD_01109 -1.4 -1.9 L,D-transpeptidase linking Lpp to murein compare
ECD_02508 -1.4 -2.2 tmRNA-binding trans-translation protein compare
ECD_01629 -1.4 -2.3 transcriptional repressor, hypoxanthine-binding compare
ECD_04048 -1.4 -1.9 DUF2170 family protein compare
ECD_00053 -1.4 -3.6 diadenosine tetraphosphatase compare
ECD_02404 -1.4 -2.6 BamABCDE complex OM biogenesis lipoprotein compare
ECD_02201 -1.3 -5.9 NADH:ubiquinone oxidoreductase, membrane subunit N compare
ECD_01614 -1.3 -2.0 putative membrane fusion protein (MFP) of YdhJK efflux pump compare
ECD_00940 -1.3 -1.8 aliphatic sulfonate ABC transporter periplasmic binding protein compare
ECD_02738 -1.3 -2.4 2-octaprenylphenol hydroxylase, FAD-dependent compare
ECD_00423 -1.2 -3.4 gap repair protein compare
ECD_03731 -1.2 -4.5 TatABCE protein translocation system subunit compare
ECD_03257 -1.2 -3.5 response regulator in two-component regulatory system with EnvZ compare
ECD_02432 -1.2 -1.5 3-phenylpropionate dioxygenase, ferredoxin subunit compare
ECD_01979 -1.2 -2.3 multidrug efflux system, subunit A compare
ECD_02443 -1.2 -3.1 serine hydroxymethyltransferase compare
ECD_04184 -1.2 -3.6 fimbrial protein involved in type 1 pilus biosynthesis compare
ECD_03696 -1.2 -1.1 DUF2628 family putative inner membrane protein compare
ECD_01022 -1.2 -2.4 ATP-binding protein; putative PhoH family P-loop ATPase compare
ECD_02202 -1.2 -4.1 NADH:ubiquinone oxidoreductase, membrane subunit M compare
ECD_02346 -1.2 -1.7 aldehyde oxidoreductase, ethanolamine utilization protein compare
ECD_03144 -1.1 -1.0 DUF1992 family protein compare
ECD_02410 -1.1 -1.2 multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase compare
ECD_00681 -1.1 -0.9 succinate dehydrogenase, membrane subunit, binds cytochrome b556 compare
ECD_00818 -1.1 -2.0 hypothetical protein compare
ECD_00366 -1.1 -2.0 phosphatidylglycerophosphatase A compare
ECD_01599 -1.1 -1.9 SoxR iron-sulfur cluster reduction factor component; putative membrane-associated NADH oxidoreductase of electron transport complex compare
ECD_03256 -1.0 -4.5 sensory histidine kinase in two-component regulatory system with OmpR compare
ECD_02889 -1.0 -4.2 septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts) compare
ECD_04185 -1.0 -1.4 periplasmic chaperone compare
ECD_00081 -1.0 -3.5 transcriptional repressor-activator for carbon metabolism compare
ECD_00001 -1.0 -3.0 thr operon leader peptide compare
ECD_03509 -1.0 -4.1 ATP-dependent DNA helicase compare
ECD_01706 -1.0 -1.4 N,N'-diacetylchitobiose-specific enzyme IIC component of PTS compare
ECD_00682 -1.0 -1.7 succinate dehydrogenase, membrane subunit, binds cytochrome b556 compare
ECD_01409 -1.0 -2.0 ATP-binding protein, periplasmic, function unknown compare
ECD_03735 -1.0 -4.2 NAD(P)H-flavin reductase compare
ECD_02254 -1.0 -2.6 chorismate synthase compare
ECD_00015 -1.0 -4.2 chaperone Hsp40, DnaK co-chaperone compare
ECD_02205 -0.9 -2.5 NADH:ubiquinone oxidoreductase, membrane subunit J compare
ECD_02028 -0.9 -2.2 putative kinase compare
ECD_02398 -0.9 -2.1 nalidixic acid resistance protein, putative periplasmic protein compare
ECD_00683 -0.9 -3.1 succinate dehydrogenase, flavoprotein subunit compare
ECD_03097 -0.9 -3.8 l-arginine-responsive arginine metabolism regulon transcriptional regulator compare
ECD_02470 -0.9 -3.1 ATP-dependent RNA helicase compare
ECD_03911 -0.9 -2.7 chorismate--pyruvate lyase compare
ECD_00687 -0.9 -2.6 succinyl-CoA synthetase, beta subunit compare
ECD_02220 -0.9 -1.3 UPF0208 family inner membrane protein compare
ECD_02972 -0.9 -1.8 DUF805 family inner membrane protein compare
ECD_02216 -0.9 -2.4 5'-nucleotidase compare
ECD_00251 -0.9 -3.6 ECP production pilus chaperone compare
ECD_00634 -0.9 -1.8 N-acetylglucosamine-6-phosphate deacetylase compare
ECD_01735 -0.9 -1.5 protease IV (signal peptide peptidase) compare
ECD_02729 -0.9 -2.5 flavinator of succinate dehydrogenase; antitoxin of CptAB toxin-antitoxin pair compare
ECD_03590 -0.9 -1.5 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase compare
ECD_01915 -0.8 -2.1 putative TusA family sulfurtransferase compare
ECD_03353 -0.8 -1.5 hypothetical protein compare
ECD_00680 -0.8 -2.6 citrate synthase compare
ECD_02820 -0.8 -1.0 hypothetical protein compare
ECD_03469 -0.8 -2.3 putative rhodanese-related sulfurtransferase compare
ECD_04194 -0.8 -1.3 uncharacterized protein compare
ECD_00283 -0.8 -2.0 amino acid exporter for proline, lysine, glutamate, homoserine compare
ECD_02076 -0.8 -1.1 dihydropyrimidine dehydrogenase, NADH-dependent, subunit C compare
ECD_03669 -0.8 -4.0 TDP-4-oxo-6-deoxy-D-glucose transaminase compare
ECD_01896 -0.8 -1.6 putative multdrug exporter, MATE family compare
ECD_01246 -0.8 -2.4 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
ECD_01105 -0.8 -3.2 respiratory NADH dehydrogenase 2/cupric reductase compare
ECD_00993 -0.8 -0.8 cold shock gene compare
ECD_03096 -0.8 -1.3 malate dehydrogenase, NAD(P)-binding compare
ECD_01489 -0.8 -1.7 transcriptional repressor of multiple antibiotic resistance compare
ECD_00494 -0.8 -1.5 DLP12 prophage; putative recombinase compare
ECD_03036 -0.8 -2.5 transcription termination/antitermination L factor compare
ECD_02777 -0.8 -3.5 glutathione synthetase compare
ECD_03070 -0.8 -3.5 adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase compare
ECD_01049 -0.8 -1.8 putative drug efflux system protein compare
ECD_02671 -0.8 -2.1 putative prepilin peptidase-dependent protein compare
ECD_01590 -0.8 -2.0 maltose and glucose-specific PTS enzyme IIB component and IIC component compare
ECD_02231 -0.8 -2.1 histidine ABC transporter ATPase compare
ECD_02203 -0.8 -3.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
ECD_00575 -0.8 -3.0 alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)-binding compare
ECD_01160 -0.8 -2.8 oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I compare
ECD_02463 -0.7 -2.0 back-translocating elongation factor EF4, GTPase compare
ECD_02920 -0.7 -1.4 DUF1449 family inner membrane protein compare
ECD_03813 -0.7 -1.7 FtsZ stabilizer, septal ring assembly factor, cell division stimulator compare
ECD_00109 -0.7 -3.3 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; murein amidase compare
ECD_00402 -0.7 -1.6 nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB compare
ECD_04107 -0.7 -1.6 trehalose-6-P hydrolase compare
ECD_01906 -0.7 -1.0 hypothetical protein compare
ECD_01138 -0.7 -1.5 anti-repressor for YcgE, blue light-responsive; FAD-binding; inactive c-di-GMP phosphodiesterase-like EAL domain protein compare
ECD_02109 -0.7 -1.9 microcin C ABC transporter permease compare
ECD_02724 -0.7 -4.6 ssDNA exonuclease, 5 compare
ECD_01103 -0.7 -0.6 beta N-acetyl-glucosaminidase compare
ECD_03093 -0.7 -1.4 DUF1043 family inner membrane-anchored protein compare
ECD_00006 -0.7 -3.1 peroxide resistance protein, lowers intracellular iron compare
ECD_00794 -0.7 -2.1 molybdopterin molybdenumtransferase; molybdopterin biosynthesis protein compare
ECD_04042 -0.7 -1.8 HflB protease modulator specific for phage lambda cII repressor compare
ECD_02973 -0.7 -0.9 DUF805 family inner membrane protein compare
ECD_04111 -0.7 -2.3 enamine/imine deaminase, reaction intermediate detoxification compare
ECD_04070 -0.7 -1.6 50S ribosomal subunit protein L9 compare
ECD_02208 -0.7 -3.8 NADH:ubiquinone oxidoreductase, chain G compare
ECD_01969 -0.7 -1.7 inner membrane protein compare
ECD_01642 -0.7 -1.3 putative oxidoreductase subunit compare
ECD_00938 -0.7 -1.2 aliphatic sulfonate ABC transporter permease compare
ECD_02111 -0.7 -1.4 uncharacterized protein compare
ECD_03355 -0.7 -0.7 Putative LuxR family repressor for dicarboxylate transport compare
ECD_02401 -0.7 -1.9 exonuclease VII, large subunit compare
ECD_01061 -0.7 -2.1 multidrug resistance efflux transporter conferring overexpression resistance to norfloxacin and enoxacin compare
ECD_01947 -0.7 -1.9 dTDP-glucose 4,6 dehydratase, NAD(P)-binding compare
ECD_01565 -0.7 -1.3 putative arabinose efflux transporter compare
ECD_00082 -0.7 -1.3 RsmH methytransferase inhibitor compare
ECD_01168 -0.7 -1.0 lytic murein endotransglycosylase E compare
ECD_01425 -0.7 -1.7 nitrate reductase 2 (NRZ), beta subunit compare
ECD_02365 -0.7 -1.5 palmitoyl-CoA esterase activity, uncertain physiological substrate compare
ECD_03507 -0.7 -1.8 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase compare
ECD_02209 -0.7 -2.7 NADH:ubiquinone oxidoreductase, chain F compare
ECD_00552 -0.7 -1.3 stimulator of EntF adenylation activity, MbtH-like compare
ECD_02168 -0.7 -2.5 anaerobic sn-glycerol-3-phosphate dehydrogenase membrane anchor subunit compare
ECD_00200 -0.7 -1.9 2,5-diketo-D-gluconate reductase B compare
ECD_01557 -0.6 -2.1 S- and N-oxide reductase, A subunit, periplasmic compare
ECD_02710 -0.6 -1.4 CTP:molybdopterin cytidylyltransferase compare
ECD_04119 -0.6 -0.7 SopA-central-domain-like hexapeptide repeat protein compare
ECD_01983 -0.6 -0.8 sensory histidine kinase in two-component regulatory system with BaeR compare
ECD_01779 -0.6 -1.1 putative reactive intermediate deaminase compare
ECD_03583 -0.6 -4.0 gap repair protein compare
ECD_00501 -0.6 -1.6 uncharacterized protein, DLP12 prophage compare
ECD_02070 -0.6 -1.1 UPF0299 family inner membrane protein compare
ECD_01818 -0.6 -0.8 extracellular Colicin M immunity family protein compare
ECD_03657 -0.6 -3.0 guanosine pentaphosphatase/exopolyphosphatase compare
ECD_00021 -0.6 -1.6 putative usher protein compare
ECD_01681 -0.6 -1.0 integration host factor (IHF), DNA-binding protein, alpha subunit compare
ECD_03489 -0.6 -3.7 lipopolysaccharide core biosynthesis protein compare
ECD_03063 -0.6 -2.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
ECD_01039 -0.6 -0.8 curlin subunit, amyloid curli fibers, cryptic compare
ECD_01019 -0.6 -1.8 putative membrane protein compare
ECD_00646 -0.6 -1.8 lipoprotein compare
ECD_04269 -0.6 -1.5 transcriptional repressor, tryptophan-binding compare
ECD_02396 -0.6 -1.1 uncharacterized protein compare
ECD_03798 -0.6 -1.4 response regulator in two-component regulatory system with CpxA compare
ECD_01221 -0.6 -1.5 oligopeptide ABC transporter ATPase compare
ECD_02032 -0.6 -1.1 hydoxyethylthiazole kinase compare
ECD_00496 -0.6 -1.1 DLP12 prophage; putative DNA-binding transcriptional regulator compare
ECD_00450 -0.6 -0.8 conserved protein, rhs-like protein compare
ECD_02944 -0.6 -3.9 transcriptional repressor compare
ECD_02984 -0.6 -0.9 L-threonine dehydratase, catabolic compare
ECD_02189 -0.6 -0.9 dihydroxynaphthoic acid synthetase compare
ECD_02206 -0.6 -1.6 NADH:ubiquinone oxidoreductase, chain I compare
ECD_01048 -0.6 -0.7 multicopy suppressor of secY and secA compare
ECD_01310 -0.6 -1.1 stress-induced protein compare
ECD_01577 -0.6 -0.5 response regulator of RstAB two-component system compare
ECD_03999 -0.6 -1.0 antitoxin of GhoTS toxin-antitoxin pair; endonuclease for ghoT mRNA compare
ECD_02211 -0.6 -2.6 NADH:ubiquinone oxidoreductase, fused CD subunit compare
ECD_03356 -0.6 -1.8 putative Mg(2+) transport ATPase, inner membrane protein compare
ECD_04093 -0.6 -0.8 GGCT-like protein compare
ECD_03801 -0.6 -3.4 6-phosphofructokinase I compare
ECD_01006 -0.6 -1.0 uncharacterized protein compare
ECD_03668 -0.6 -2.2 TDP-fucosamine acetyltransferase compare
ECD_01664 -0.6 -0.7 putative acyl-CoA dehydrogenase compare
ECD_01015 -0.6 -1.9 pyrimidine oxygenase, FMN-dependent compare
ECD_04049 -0.6 -1.0 PspA/IM30 family protein compare
ECD_03342 -0.6 -2.2 phosphate transporter, low-affinity; tellurite importer compare
ECD_03818 -0.6 -1.1 essential cell division protein compare
ECD_00464 -0.6 -1.3 glycerate kinase II compare
ECD_01630 -0.6 -1.4 LysR family putative transcriptional regulator compare
ECD_00142 -0.6 -2.1 poly(A) polymerase compare
ECD_01261 -0.6 -1.7 global regulator of transcription; DeoR family compare


Specific Phenotypes

None in this experiment

For Escherichia coli BL21 in lb_plus_sm_buffer experiments