Experiment set1IT053 for Serratia liquefaciens MT49

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Nickel (II) chloride hexahydrate 80 uM, aerobic

200 most important genes:

  gene name fitness t score description  
IAI46_08185 -3.8 -4.4 imidazole glycerol phosphate synthase subunit HisF compare
IAI46_08195 -3.5 -5.8 imidazole glycerol phosphate synthase subunit HisH compare
IAI46_20730 -3.5 -2.4 site-specific tyrosine recombinase XerD compare
IAI46_08205 -3.0 -9.4 histidinol-phosphate transaminase compare
IAI46_25195 -3.0 -2.1 phosphate signaling complex protein PhoU compare
IAI46_01650 -3.0 -2.0 adenylosuccinate synthase compare
IAI46_08210 -3.0 -7.9 histidinol dehydrogenase compare
IAI46_08190 -2.8 -4.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI46_02940 -2.8 -10.5 phosphoserine phosphatase compare
IAI46_21325 -2.7 -3.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
IAI46_03190 -2.7 -10.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI46_05375 -2.6 -2.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI46_23700 -2.6 -5.6 3-dehydroquinate synthase compare
IAI46_20900 -2.5 -7.5 phosphoglycerate dehydrogenase compare
IAI46_00725 -2.5 -2.4 tyrosine recombinase XerC compare
IAI46_23690 -2.4 -2.3 adenine-specific DNA-methyltransferase compare
IAI46_03195 -2.2 -13.7 carbamoyl-phosphate synthase large subunit compare
IAI46_24770 -2.2 -4.6 polysaccharide deacetylase family protein compare
IAI46_02275 -2.2 -7.0 aspartate carbamoyltransferase compare
IAI46_09740 -2.1 -6.2 dihydroorotase compare
IAI46_08200 -2.1 -6.4 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI46_12890 -2.1 -2.7 SidA/IucD/PvdA family monooxygenase compare
IAI46_24665 -2.1 -5.2 envelope stress sensor histidine kinase CpxA compare
IAI46_24760 -2.1 -4.5 glycosyltransferase compare
IAI46_08640 -2.1 -7.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
IAI46_01365 -2.1 -13.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI46_20455 -2.1 -2.4 RNA pyrophosphohydrolase compare
IAI46_24755 -2.1 -8.1 O-antigen ligase family protein compare
IAI46_08635 -2.0 -7.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI46_21210 -2.0 -6.9 RNA polymerase-binding protein DksA compare
IAI46_24955 -2.0 -5.6 nitrogen regulation protein NR(II) compare
IAI46_23240 -2.0 -5.0 shikimate dehydrogenase compare
IAI46_24750 -1.9 -3.3 glycosyltransferase compare
IAI46_08215 -1.9 -5.5 ATP phosphoribosyltransferase compare
IAI46_18770 -1.9 -4.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI46_24845 -1.8 -10.0 orotate phosphoribosyltransferase compare
IAI46_11265 -1.8 -2.3 ribonuclease T compare
IAI46_01360 -1.8 -9.6 phosphoribosylamine--glycine ligase compare
IAI46_11260 -1.8 -2.8 Grx4 family monothiol glutaredoxin compare
IAI46_06275 -1.8 -2.8 2-oxoglutarate dehydrogenase E1 component compare
IAI46_24960 -1.7 -6.6 nitrogen regulation protein NR(I) compare
IAI46_03600 -1.7 -11.5 GTP diphosphokinase compare
IAI46_08805 -1.7 -5.6 quinone-dependent dihydroorotate dehydrogenase compare
IAI46_00735 -1.7 -7.2 DNA helicase II compare
IAI46_25250 -1.7 -3.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI46_19560 -1.7 -5.3 elongation factor 4 compare
IAI46_08180 -1.6 -4.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI46_17810 -1.6 -9.2 amidophosphoribosyltransferase compare
IAI46_19260 -1.6 -3.7 outer membrane protein assembly factor BamB compare
IAI46_03255 -1.6 -2.6 peptidylprolyl isomerase SurA compare
IAI46_13915 -1.5 -3.0 orotidine-5'-phosphate decarboxylase compare
IAI46_00610 -1.5 -1.7 dTDP-glucose 4,6-dehydratase compare
IAI46_18885 -1.5 -5.7 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI46_10795 -1.5 -2.4 RNA chaperone ProQ compare
IAI46_23685 -1.5 -2.0 ribulose-phosphate 3-epimerase compare
IAI46_02320 -1.5 -6.5 ornithine carbamoyltransferase compare
IAI46_24945 -1.4 -1.7 ribosome-dependent GTPase TypA compare
IAI46_24505 -1.4 -8.2 argininosuccinate synthase compare
IAI46_19475 -1.4 -10.0 phosphoribosylformylglycinamidine synthase compare
IAI46_17450 -1.4 -3.0 transcriptional regulator RcsB compare
IAI46_18745 -1.4 -6.0 M15 family metallopeptidase compare
IAI46_25110 -1.4 -4.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI46_12205 -1.4 -2.1 3-hydroxyacyl-ACP dehydratase FabZ compare
IAI46_18025 -1.3 -4.5 chorismate synthase compare
IAI46_08130 -1.3 -1.9 ABC transporter ATP-binding protein compare
IAI46_01745 -1.3 -1.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI46_12800 -1.3 -2.8 protocatechuate 3,4-dioxygenase subunit beta compare
IAI46_24690 -1.3 -5.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
IAI46_03840 -1.3 -3.3 recombinase RecA compare
IAI46_06965 -1.3 -2.8 ABC transporter ATP-binding protein compare
IAI46_18460 -1.3 -3.9 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI46_12530 -1.3 -1.8 proton-conducting membrane transporter compare
IAI46_08530 -1.2 -2.6 cysteine/glutathione ABC transporter ATP-binding protein/permease CydC compare
IAI46_00710 -1.2 -2.6 lipoprotein compare
IAI46_07865 -1.2 -3.0 hypothetical protein compare
IAI46_10055 -1.2 -1.8 hypothetical protein compare
IAI46_03040 -1.2 -5.9 threonine synthase compare
IAI46_19600 -1.2 -4.4 ATP-dependent RNA helicase SrmB compare
IAI46_05010 -1.2 -2.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
IAI46_17680 -1.2 -1.8 NADH-quinone oxidoreductase subunit NuoH compare
IAI46_12210 -1.2 -2.3 TIGR00645 family protein compare
IAI46_09185 -1.2 -1.8 hypothetical protein compare
IAI46_08160 -1.2 -1.2 NADP-dependent phosphogluconate dehydrogenase compare
IAI46_13935 -1.2 -1.8 LapA family protein compare
IAI46_03035 -1.2 -6.4 homoserine kinase compare
IAI46_01620 -1.1 -2.4 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
IAI46_24645 -1.1 -5.0 6-phosphofructokinase compare
IAI46_03960 -1.1 -8.0 bifunctional chorismate mutase/prephenate dehydrogenase compare
IAI46_17000 -1.1 -1.9 citrate lyase acyl carrier protein compare
IAI46_22470 -1.1 -0.7 RNA polymerase factor sigma-54 compare
IAI46_16805 -1.1 -2.6 hypothetical protein compare
IAI46_15190 -1.1 -2.0 hypothetical protein compare
IAI46_05370 -1.1 -3.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI46_24500 -1.1 -6.3 argininosuccinate lyase compare
IAI46_12915 -1.1 -1.9 DUF1428 family protein compare
IAI46_02875 -1.1 -4.7 peptide chain release factor 3 compare
IAI46_24985 -1.0 -4.9 DNA polymerase I compare
IAI46_19295 -1.0 -3.3 nucleoside-diphosphate kinase compare
IAI46_07450 -1.0 -2.0 Lrp/AsnC family transcriptional regulator compare
IAI46_20395 -1.0 -4.9 amino-acid N-acetyltransferase compare
IAI46_12810 -1.0 -2.2 LysR family transcriptional regulator compare
IAI46_01970 -1.0 -3.0 DEAD/DEAH family ATP-dependent RNA helicase compare
IAI46_24510 -0.9 -5.4 acetylglutamate kinase compare
IAI46_08555 -0.9 -5.1 leucine-responsive transcriptional regulator Lrp compare
IAI46_01955 -0.9 -4.7 polyribonucleotide nucleotidyltransferase compare
IAI46_20760 -0.9 -1.5 FAD assembly factor SdhE compare
IAI46_24525 -0.9 -5.9 phosphoenolpyruvate carboxylase compare
IAI46_14610 -0.9 -1.3 zinc ABC transporter ATP-binding protein ZnuC compare
IAI46_12390 -0.9 -2.4 heavy metal response regulator transcription factor compare
IAI46_15220 -0.9 -2.3 hypothetical protein compare
IAI46_13995 -0.9 -1.8 23S rRNA pseudouridine(2605) synthase RluB compare
IAI46_10800 -0.9 -4.3 carboxy terminal-processing peptidase compare
IAI46_18665 -0.9 -2.5 chaperone NapD compare
IAI46_01350 -0.9 -2.6 DNA-binding protein HU-alpha compare
IAI46_18015 -0.9 -3.5 TSUP family transporter compare
IAI46_24520 -0.9 -5.2 acetylornithine deacetylase compare
IAI46_13955 -0.9 -2.2 YmiA family putative membrane protein compare
IAI46_16275 -0.9 -2.1 hypothetical protein compare
IAI46_04430 -0.8 -3.3 glutamate 5-kinase compare
IAI46_05015 -0.8 -3.2 ATP-dependent protease ATP-binding subunit ClpX compare
IAI46_08035 -0.8 -3.1 oligosaccharide flippase family protein compare
IAI46_17840 -0.8 -3.6 tRNA pseudouridine(38-40) synthase TruA compare
IAI46_20270 -0.8 -1.6 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI46_19265 -0.8 -1.9 YfgM family protein compare
IAI46_12840 -0.8 -2.4 hydroxyacid dehydrogenase compare
IAI46_17815 -0.8 -4.0 colicin V production protein compare
IAI46_18890 -0.8 -2.7 phosphoribosylglycinamide formyltransferase compare
IAI46_06250 -0.8 -5.1 citrate synthase compare
IAI46_08045 -0.8 -1.3 hypothetical protein compare
IAI46_06145 -0.8 -2.9 alpha-D-glucose phosphate-specific phosphoglucomutase compare
IAI46_24695 -0.8 -3.6 protein-export chaperone SecB compare
IAI46_20215 -0.8 -1.5 molecular chaperone Skp compare
IAI46_22590 -0.8 -0.8 ribosome-associated protein compare
IAI46_13765 -0.8 -1.8 hypothetical protein compare
IAI46_14675 -0.8 -2.9 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB compare
IAI46_22345 -0.8 -6.7 glutamate synthase large subunit compare
IAI46_20705 -0.8 -1.3 tRNA-Gly compare
IAI46_22350 -0.8 -4.9 glutamate synthase small subunit compare
IAI46_10155 -0.8 -2.4 DUF2024 family protein compare
IAI46_03985 -0.8 -4.3 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI46_17140 -0.7 -2.1 hypothetical protein compare
IAI46_07745 -0.7 -2.4 molecular chaperone compare
IAI46_23090 -0.7 -5.1 glucose-6-phosphate isomerase compare
IAI46_14940 -0.7 -2.1 hypothetical protein compare
IAI46_08010 -0.7 -4.5 polysaccharide export protein compare
IAI46_24515 -0.7 -3.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI46_12585 -0.7 -2.0 hypothetical protein compare
IAI46_18915 -0.7 -4.8 polyphosphate kinase 1 compare
IAI46_09205 -0.7 -3.7 UvrY/SirA/GacA family response regulator transcription factor compare
IAI46_21270 -0.7 -4.2 carbonate dehydratase compare
IAI46_03015 -0.7 -2.7 two-component system response regulator ArcA compare
IAI46_19280 -0.7 -2.3 cytoskeleton protein RodZ compare
IAI46_11455 -0.7 -1.4 endonuclease III compare
IAI46_11870 -0.7 -2.4 FAD-dependent urate hydroxylase HpxO compare
IAI46_08750 -0.7 -2.9 aspartate/tyrosine/aromatic aminotransferase compare
IAI46_01520 -0.7 -0.8 entericidin A/B family lipoprotein compare
IAI46_14495 -0.7 -1.9 CsbD family protein compare
IAI46_12660 -0.7 -1.3 NAD(P)H-dependent oxidoreductase compare
IAI46_07710 -0.7 -1.4 transcriptional regulator BetI compare
IAI46_21415 -0.7 -3.8 pyrroline-5-carboxylate reductase compare
IAI46_03725 -0.7 -3.3 adenylyl-sulfate kinase compare
IAI46_03695 -0.7 -3.7 phosphoadenylyl-sulfate reductase compare
IAI46_12805 -0.7 -1.5 protocatechuate 3,4-dioxygenase subunit alpha compare
IAI46_03685 -0.7 -3.7 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
IAI46_11080 -0.7 -1.5 ABC transporter substrate-binding protein compare
IAI46_04315 -0.7 -2.4 acireductone dioxygenase compare
IAI46_18035 -0.7 -2.0 endonuclease SmrB compare
IAI46_19640 -0.7 -3.1 outer membrane protein assembly factor BamE compare
IAI46_07435 -0.7 -1.3 carboxymuconolactone decarboxylase family protein compare
IAI46_07070 -0.7 -1.6 TetR/AcrR family transcriptional regulator compare
IAI46_18020 -0.7 -1.8 penicillin-insensitive murein endopeptidase compare
IAI46_14515 -0.7 -1.5 septum site-determining protein MinC compare
IAI46_10285 -0.7 -1.2 peptide chain release factor N(5)-glutamine methyltransferase compare
IAI46_11930 -0.7 -1.1 AprI/Inh family metalloprotease inhibitor compare
IAI46_17145 -0.6 -1.6 DNA polymerase II compare
IAI46_18425 -0.6 -1.3 DUF3820 family protein compare
IAI46_17235 -0.6 -1.6 1-phosphofructokinase compare
IAI46_04435 -0.6 -3.3 glutamate-5-semialdehyde dehydrogenase compare
IAI46_24530 -0.6 -4.6 methylenetetrahydrofolate reductase compare
IAI46_06015 -0.6 -1.9 PhoH family protein compare
IAI46_11130 -0.6 -4.2 FAD-binding oxidoreductase compare
IAI46_19655 -0.6 -1.9 SsrA-binding protein SmpB compare
IAI46_05200 -0.6 -2.3 DsrE family protein compare
IAI46_05525 -0.6 -1.6 hypothetical protein compare
IAI46_03955 -0.6 -4.6 3-deoxy-7-phosphoheptulonate synthase compare
IAI46_08025 -0.6 -2.1 acylneuraminate cytidylyltransferase family protein compare
IAI46_18135 -0.6 -2.5 hypothetical protein compare
IAI46_07240 -0.6 -1.4 urea ABC transporter ATP-binding protein UrtD compare
IAI46_04935 -0.6 -0.9 exodeoxyribonuclease VII small subunit compare
IAI46_23965 -0.6 -3.8 gluconate operon transcriptional repressor GntR compare
IAI46_14250 -0.6 -3.0 two-component system response regulator RssB compare
IAI46_14490 -0.6 -2.1 YcgN family cysteine cluster protein compare
IAI46_02120 -0.6 -1.7 type II toxin-antitoxin system RelB/DinJ family antitoxin compare
IAI46_18465 -0.6 -0.7 PTS glucose transporter subunit IIA compare
IAI46_08915 -0.6 -2.1 CoA-binding protein compare
IAI46_00605 -0.6 -1.1 UDP-N-acetyl-D-mannosamine dehydrogenase compare
IAI46_10180 -0.6 -2.4 transcriptional regulator EbgR compare
IAI46_15900 -0.6 -1.2 flagellar type III secretion system protein FliR compare
IAI46_18695 -0.6 -1.4 protein YpfM compare
IAI46_16270 -0.6 -1.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Serratia liquefaciens MT49 in stress experiments

For stress Nickel (II) chloride hexahydrate across organisms