Experiment set1IT053 for Enterobacter asburiae PDN3

Compare to:

M9 with casamino acids and trichloroethylene 76.3 uM

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_4153 -4.8 -3.3 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_2265 -4.2 -2.3 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_4544 -4.1 -2.4 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_3285 -3.9 -8.4 malate dehydrogenase (NAD) (EC 1.1.1.37) compare
EX28DRAFT_2270 -3.8 -1.6 succinate dehydrogenase subunit C (EC 1.3.5.1) compare
EX28DRAFT_3419 -3.8 -12.3 Fructose-1,6-bisphosphatase compare
EX28DRAFT_2027 -3.7 -5.6 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_0934 -3.6 -13.0 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_0111 -3.5 -2.9 FeS cluster assembly scaffold IscU compare
EX28DRAFT_0932 -3.4 -5.5 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
EX28DRAFT_0933 -3.3 -11.9 tryptophan synthase, beta subunit compare
EX28DRAFT_0167 -3.1 -2.6 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
EX28DRAFT_2267 -3.0 -4.7 succinate dehydrogenase and fumarate reductase iron-sulfur protein compare
EX28DRAFT_2264 -2.9 -8.8 succinyl-CoA synthetase, beta subunit compare
EX28DRAFT_3336 -2.8 -14.8 aspartate ammonia-lyase compare
EX28DRAFT_3711 -2.8 -1.6 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_0046 -2.8 -4.5 shikimate dehydrogenase compare
EX28DRAFT_0936 -2.8 -5.7 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_0092 -2.8 -1.9 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_3646 -2.7 -5.8 4-hydroxythreonine-4-phosphate dehydrogenase compare
EX28DRAFT_0935 -2.7 -6.3 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
EX28DRAFT_2258 -2.6 -2.9 cytochrome d oxidase, subunit II (cydB) compare
EX28DRAFT_2046 -2.6 -2.9 thiol reductant ABC exporter, CydC subunit compare
EX28DRAFT_2252 -2.5 -2.9 TolA protein compare
EX28DRAFT_1706 -2.5 -9.3 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
EX28DRAFT_0972 -2.4 -2.5 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_2945 -2.4 -1.6 tyrosine recombinase XerD compare
EX28DRAFT_4515 -2.3 -2.9 hypothetical protein compare
EX28DRAFT_4271 -2.2 -1.3 glycerol-3-phosphate acyltransferase (EC 2.3.1.15) compare
EX28DRAFT_0330 -2.2 -3.7 NADH:ubiquinone oxidoreductase subunit 6 (chain J) compare
EX28DRAFT_2269 -2.2 -6.8 succinate dehydrogenase, hydrophobic membrane anchor protein compare
EX28DRAFT_3710 -2.2 -6.8 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_3883 -2.1 -3.8 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_2263 -2.0 -4.1 succinyl-CoA synthetase, alpha subunit compare
EX28DRAFT_0291 -2.0 -3.2 Uncharacterized membrane protein, required for colicin V production compare
EX28DRAFT_4507 -2.0 -5.5 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
EX28DRAFT_2268 -2.0 -8.4 succinate dehydrogenase subunit A (EC 1.3.5.1) compare
EX28DRAFT_0594 -1.9 -1.5 T/G mismatch-specific endonuclease (EC 3.1.-.-) compare
EX28DRAFT_0333 -1.9 -6.4 proton-translocating NADH-quinone oxidoreductase, chain M compare
EX28DRAFT_0322 -1.9 -7.6 NADH-quinone oxidoreductase, B subunit compare
EX28DRAFT_0038 -1.9 -1.9 K+ transport systems, NAD-binding component compare
EX28DRAFT_0284 -1.8 -6.9 Phosphoglycerate dehydrogenase and related dehydrogenases compare
EX28DRAFT_0523 -1.8 -1.6 Glycosyltransferase like family 2 compare
EX28DRAFT_0332 -1.8 -9.9 proton-translocating NADH-quinone oxidoreductase, chain L compare
EX28DRAFT_2400 -1.8 -1.0 Cold shock proteins compare
EX28DRAFT_1841 -1.8 -1.2 Predicted metal-binding, possibly nucleic acid-binding protein compare
EX28DRAFT_3647 -1.8 -3.6 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_0325 -1.7 -5.1 NADH-quinone oxidoreductase, F subunit compare
EX28DRAFT_4156 -1.7 -2.2 ribulose-phosphate 3-epimerase compare
EX28DRAFT_4077 -1.7 -1.3 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
EX28DRAFT_1609 -1.7 -10.5 hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region/hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region compare
EX28DRAFT_1596 -1.7 -1.1 Protein of unknown function (DUF1019) compare
EX28DRAFT_3675 -1.7 -6.5 transcriptional regulator, LacI family compare
EX28DRAFT_0434 -1.6 -1.6 hypothetical protein compare
EX28DRAFT_0948 -1.6 -1.7 hypothetical protein compare
EX28DRAFT_2589 -1.6 -1.1 Sigma-S stabilisation anti-adaptor protein compare
EX28DRAFT_0331 -1.6 -2.7 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_0327 -1.6 -4.4 NADH-quinone oxidoreductase, chain G compare
EX28DRAFT_2259 -1.6 -3.5 Cytochrome bd-type quinol oxidase, subunit 1 compare
EX28DRAFT_0334 -1.6 -1.8 proton-translocating NADH-quinone oxidoreductase, chain N compare
EX28DRAFT_2250 -1.5 -2.8 peptidoglycan-associated lipoprotein compare
EX28DRAFT_0329 -1.5 -6.1 NADH-quinone oxidoreductase, chain I compare
EX28DRAFT_0321 -1.5 -1.0 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
EX28DRAFT_2008 -1.5 -5.4 Aspartate/tyrosine/aromatic aminotransferase compare
EX28DRAFT_2115 -1.5 -2.4 hypothetical protein compare
EX28DRAFT_0921 -1.5 -1.3 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3401 -1.5 -1.7 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
EX28DRAFT_0531 -1.4 -5.6 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_2540 -1.4 -4.8 cytochrome o ubiquinol oxidase, subunit I compare
EX28DRAFT_0323 -1.4 -3.7 NADH (or F420H2) dehydrogenase, subunit C compare
EX28DRAFT_4475 -1.4 -3.6 Adenylate cyclase compare
EX28DRAFT_1650 -1.4 -2.1 ribonuclease T compare
EX28DRAFT_0861 -1.4 -3.0 Response regulator receiver domain compare
EX28DRAFT_3754 -1.4 -0.8 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
EX28DRAFT_2958 -1.4 -1.3 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_2067 -1.4 -1.5 Transglycosylase SLT domain compare
EX28DRAFT_4420 -1.4 -1.8 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
EX28DRAFT_2075 -1.3 -3.1 type II secretion system protein H compare
EX28DRAFT_0970 -1.3 -2.4 ABC-type antimicrobial peptide transport system, ATPase component compare
EX28DRAFT_3879 -1.3 -2.8 Glycosyltransferase compare
EX28DRAFT_2974 -1.3 -5.6 transketolase, bacterial and yeast compare
EX28DRAFT_3058 -1.3 -2.7 Signal transduction histidine kinase compare
EX28DRAFT_0272 -1.3 -2.1 phosphohistidine phosphatase, SixA compare
EX28DRAFT_0328 -1.3 -1.5 NADH:ubiquinone oxidoreductase subunit 1 (chain H) compare
EX28DRAFT_2851 -1.3 -2.6 phosphoadenosine phosphosulfate reductase, thioredoxin dependent compare
EX28DRAFT_2424 -1.3 -4.4 transcriptional regulator, TetR family compare
EX28DRAFT_2509 -1.3 -2.2 transcriptional regulator, LacI family compare
EX28DRAFT_2128 -1.2 -2.2 Glutathione S-transferase compare
EX28DRAFT_0593 -1.2 -6.6 DNA-methyltransferase (dcm) compare
EX28DRAFT_0324 -1.2 -2.4 NADH-quinone oxidoreductase, E subunit compare
EX28DRAFT_4318 -1.2 -2.5 Glucose-6-phosphate isomerase compare
EX28DRAFT_0901 -1.2 -1.6 hypothetical protein compare
EX28DRAFT_2045 -1.2 -0.8 thiol reductant ABC exporter, CydD subunit compare
EX28DRAFT_3426 -1.2 -1.2 conserved hypothetical protein EF_0831/AHA_3912 compare
EX28DRAFT_1309 -1.2 -2.8 hypothetical protein compare
EX28DRAFT_3311 -1.1 -1.1 ribosomal protein L11 methyltransferase compare
EX28DRAFT_1500 -1.1 -1.8 Predicted transcriptional regulators compare
EX28DRAFT_4158 -1.1 -2.8 tryptophanyl-tRNA synthetase (EC 6.1.1.2) compare
EX28DRAFT_2531 -1.1 -2.1 endopeptidase La compare
EX28DRAFT_0579 -1.1 -1.5 Uncharacterized protein conserved in bacteria (DUF2256) compare
EX28DRAFT_3947 -1.1 -2.2 RNA compare
EX28DRAFT_0292 -1.1 -2.1 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_0620 -1.1 -1.2 Flagellar protein FliT compare
EX28DRAFT_4324 -1.1 -2.4 probable addiction module antidote protein compare
EX28DRAFT_0132 -1.0 -2.1 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_2957 -1.0 -2.8 glycine cleavage system T protein compare
EX28DRAFT_1016 -1.0 -2.4 Uncharacterized conserved protein compare
EX28DRAFT_2948 -1.0 -3.5 Uncharacterized conserved protein compare
EX28DRAFT_3540 -1.0 -2.2 4-hydroxyphenylacetate catabolism regulatory protein HpaA compare
EX28DRAFT_1839 -1.0 -4.4 phosphate:acyl-[acyl carrier protein] acyltransferase compare
EX28DRAFT_0545 -1.0 -2.6 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_2222 -1.0 -3.5 formiminoglutamase (EC 3.5.3.8) compare
EX28DRAFT_4123 -0.9 -2.4 transcriptional regulator, DeoR family compare
EX28DRAFT_3089 -0.9 -0.8 Transcriptional regulators compare
EX28DRAFT_0076 -0.9 -2.7 elongation factor 4 compare
EX28DRAFT_0312 -0.9 -2.4 phosphate acetyltransferase compare
EX28DRAFT_4437 -0.9 -2.3 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2512 -0.9 -2.9 hypothetical protein compare
EX28DRAFT_0001 -0.9 -1.1 Elongation factor Tu domain 2/Elongation factor Tu C-terminal domain compare
EX28DRAFT_2548 -0.9 -3.7 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_0091 -0.9 -0.7 hypothetical protein compare
EX28DRAFT_4110 -0.9 -1.7 hypothetical protein compare
EX28DRAFT_1692 -0.9 -0.9 Biofilm development protein YmgB/AriR compare
EX28DRAFT_0494 -0.9 -0.5 Protein-tyrosine-phosphatase compare
EX28DRAFT_0922 -0.9 -1.6 TonB family C-terminal domain compare
EX28DRAFT_0069 -0.9 -1.0 Superfamily II DNA and RNA helicases compare
EX28DRAFT_1382 -0.9 -1.4 transcriptional regulator, TetR family compare
EX28DRAFT_2724 -0.9 -1.1 RNA compare
EX28DRAFT_1308 -0.9 -1.5 hypothetical protein compare
EX28DRAFT_3375 -0.9 -1.1 transcriptional regulator, BadM/Rrf2 family compare
EX28DRAFT_1039 -0.9 -1.4 Sortase and related acyltransferases compare
EX28DRAFT_1785 -0.8 -1.4 Putative hemolysin compare
EX28DRAFT_3616 -0.8 -2.5 threonine synthase compare
EX28DRAFT_1260 -0.8 -1.7 hypothetical protein compare
EX28DRAFT_1740 -0.8 -0.7 Phosphotransferase system cellobiose-specific component IIA compare
EX28DRAFT_1295 -0.8 -1.4 Protein of unknown function (DUF2570) compare
EX28DRAFT_0778 -0.8 -0.7 hypothetical protein compare
EX28DRAFT_4341 -0.8 -1.8 Protein-disulfide isomerase compare
EX28DRAFT_0724 -0.8 -0.8 GAF domain-containing protein compare
EX28DRAFT_1024 -0.8 -1.2 hypothetical protein compare
EX28DRAFT_0840 -0.8 -2.3 Uncharacterized conserved protein involved in intracellular sulfur reduction compare
EX28DRAFT_1911 -0.8 -4.7 L-proline dehydrogenase (EC 1.5.99.8)/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) compare
EX28DRAFT_1620 -0.8 -1.0 hypothetical protein compare
EX28DRAFT_0081 -0.8 -3.6 DNA replication and repair protein RecO compare
EX28DRAFT_2049 -0.8 -2.3 hypothetical protein compare
EX28DRAFT_2492 -0.8 -1.5 Protein of unknown function (DUF2496) compare
EX28DRAFT_4266 -0.8 -1.3 Fe2+/Zn2+ uptake regulation proteins compare
EX28DRAFT_1050 -0.8 -2.5 luciferase family oxidoreductase, group 1 compare
EX28DRAFT_3597 -0.7 -1.1 DNA repair protein RadA compare
EX28DRAFT_2795 -0.7 -0.9 Glucitol operon activator compare
EX28DRAFT_3611 -0.7 -0.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
EX28DRAFT_2446 -0.7 -2.7 P pilus assembly protein, chaperone PapD compare
EX28DRAFT_3096 -0.7 -1.0 Hydrogenase/urease accessory protein compare
EX28DRAFT_4459 -0.7 -3.7 TDP-4-keto-6-deoxy-D-glucose transaminase compare
EX28DRAFT_2544 -0.7 -2.3 Arabinose efflux permease compare
EX28DRAFT_2721 -0.7 -1.3 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0166 -0.7 -3.7 polyphosphate kinase 1 compare
EX28DRAFT_3614 -0.7 -4.3 aspartate kinase (EC 2.7.2.4) compare
EX28DRAFT_4191 -0.7 -1.7 small GTP-binding protein domain compare
EX28DRAFT_1347 -0.7 -1.7 transcriptional regulator, DeoR family compare
EX28DRAFT_3708 -0.7 -0.9 Transcriptional regulators compare
EX28DRAFT_3165 -0.7 -2.8 Protein of unknown function (DUF1090) compare
EX28DRAFT_4121 -0.7 -2.3 Rhodanese-related sulfurtransferase compare
EX28DRAFT_4425 -0.7 -2.6 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes compare
EX28DRAFT_4513 -0.7 -4.9 Trk-type K+ transport systems, membrane components compare
EX28DRAFT_2213 -0.7 -2.3 dethiobiotin synthase compare
EX28DRAFT_2539 -0.7 -3.1 cytochrome o ubiquinol oxidase subunit II compare
EX28DRAFT_4155 -0.7 -1.4 DNA adenine methylase (dam) compare
EX28DRAFT_1121 -0.7 -1.5 Sugar kinases, ribokinase family compare
EX28DRAFT_4092 -0.7 -1.8 Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase compare
EX28DRAFT_4061 -0.7 -1.8 NADPH-glutathione reductase (EC 1.8.1.7) compare
EX28DRAFT_1889 -0.7 -2.4 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
EX28DRAFT_2082 -0.7 -3.1 hypothetical protein compare
EX28DRAFT_0313 -0.7 -2.6 acetate kinase compare
EX28DRAFT_3964 -0.7 -2.6 D-serine deaminase transcriptional activator compare
EX28DRAFT_4457 -0.7 -4.2 nucleotide sugar dehydrogenase compare
EX28DRAFT_4386 -0.7 -1.2 Signal transduction histidine kinase compare
EX28DRAFT_1656 -0.7 -2.0 Transcriptional regulator compare
EX28DRAFT_1932 -0.7 -2.1 Mg/Co/Ni transporter MgtE (contains CBS domain) compare
EX28DRAFT_1772 -0.7 -1.5 methionine-R-sulfoxide reductase compare
EX28DRAFT_3171 -0.6 -0.8 Predicted membrane protein compare
EX28DRAFT_3656 -0.6 -2.5 AraC-type DNA-binding domain-containing proteins compare
EX28DRAFT_4094 -0.6 -1.1 Protein of unknown function (DUF3261) compare
EX28DRAFT_4350 -0.6 -0.6 nitrogen regulation protein NR(I) compare
EX28DRAFT_0976 -0.6 -3.3 phage shock protein A (PspA) family protein compare
EX28DRAFT_3544 -0.6 -1.9 5-carboxymethyl-2-hydroxymuconate isomerase compare
EX28DRAFT_3185 -0.6 -1.9 transcriptional regulator, DeoR family compare
EX28DRAFT_2080 -0.6 -2.7 type II secretion system protein C compare
EX28DRAFT_2245 -0.6 -2.7 quinolinate synthetase (EC 2.5.1.72) compare
EX28DRAFT_2110 -0.6 -2.0 hypothetical protein compare
EX28DRAFT_1881 -0.6 -4.6 Membrane glycosyltransferase compare
EX28DRAFT_3476 -0.6 -0.5 hypothetical protein compare
EX28DRAFT_2973 -0.6 -3.6 erythrose-4-phosphate dehydrogenase compare
EX28DRAFT_2708 -0.6 -1.1 Protein of unknown function (DUF2946) compare
EX28DRAFT_3281 -0.6 -4.5 Predicted ATPase compare
EX28DRAFT_2883 -0.6 -2.5 Transcriptional regulator compare
EX28DRAFT_2037 -0.6 -0.7 DMSO reductase, iron-sulfur subunit compare
EX28DRAFT_0242 -0.6 -1.7 type VI secretion protein, VC_A0107 family compare
EX28DRAFT_1360 -0.6 -1.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3264 -0.6 -3.1 PAS domain S-box compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in stress experiments

For stress casamino acids across organisms