Experiment set1IT053 for Agrobacterium fabrum C58

Compare to:

L-Arabinose carbon source

200 most important genes:

  gene name fitness t score description  
Atu1850 -8.3 -5.8 phosphoribosylformylglycinamidine synthetase II compare
Atu1141 -7.7 -5.3 Phosphoribosylglycinamide synthetase compare
Atu0035 -7.4 -10.2 phosphoenolpyruvate carboxykinase compare
Atu1687 -7.4 -9.6 anthranilate phosphoribosyltransferase compare
Atu2289 -7.3 -16.4 anthranilate synthase component I and II compare
Atu3706 -7.3 -5.0 D-3-phosphoglycerate dehydrogenase compare
Atu0038 -7.2 -7.0 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1140 -7.1 -5.1 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0099 -7.1 -10.9 prephenate dehydratase compare
Atu2709 -7.0 -19.7 3-isopropylmalate dehydratase, large subunit compare
Atu1688 -6.9 -4.8 indole-3-glycerol-phosphate synthase compare
Atu1845 -6.9 -4.7 phosphoribosylformylglycinamidine synthase I compare
Atu2036 -6.9 -14.7 acetolactate synthase III, large subunit compare
Atu2747 -6.7 -15.0 hypothetical protein compare
Atu3707 -6.7 -4.6 phosphoserine aminotransferase compare
Atu2040 -6.7 -6.5 phosphoserine phosphatase compare
Atu0432 -6.6 -10.2 O-succinylhomoserine sulfhydrylase compare
Atu1308 -6.6 -6.4 aspartate carbamoyl transferase catalytic subunit compare
Atu2791 -6.6 -10.0 3-isopropylmalate dehydrogenase compare
Atu1750 -6.5 -5.0 phosphoribosyl c-AMP cyclohydrolase compare
Atu4505 -6.3 -12.1 LacI family transcriptional regulator compare
Atu2264 -6.3 -15.3 2-isopropylmalate synthase compare
Atu2718 -6.3 -10.5 homoserine O-succinyltransferase compare
Atu1205 -6.2 -13.8 threonine dehydratase compare
Atu1588 -6.1 -11.0 homoserine dehydrogenase compare
Atu0679 -6.1 -7.3 ATP phosphoribosyltransferase compare
Atu0678 -6.1 -8.4 histidyl-tRNA synthetase compare
Atu3885 -6.1 -11.0 inositol monophosphatase compare
Atu3740 -6.1 -11.7 fructose bisphosphate aldolase compare
Atu0017 -6.0 -4.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3754 -6.0 -7.7 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0400 -5.8 -5.7 orotate phosphoribosyltransferase compare
Atu1844 -5.8 -5.2 Phosphoribosylformylglycinamidine synthetase compare
Atu0537 -5.7 -8.8 histidinol dehydrogenase compare
Atu0043 -5.7 -3.9 imidazoleglycerol-phosphate dehydratase compare
Atu1307 -5.7 -7.8 dihydroorotase compare
Atu3482 -5.6 -11.0 pantoate--beta-alanine ligase compare
Atu0298 -5.6 -6.6 orotidine 5 compare
Atu0039 -5.5 -3.8 imidazoleglycerol-phosphate synthase cyclase compare
Atu3755 -5.5 -7.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3469 -5.4 -3.7 phosphoglyceromutase compare
Atu1075 -5.4 -7.8 amidophosphoribosyltransferase compare
Atu2790 -5.2 -2.8 3-isopropylmalate dehydratase, small subunit compare
Atu0399 -5.2 -5.0 dihydroorotase compare
Atu3219 -5.1 -15.9 dihydroxy-acid dehydratase compare
Atu1030 -5.1 -3.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0422 -4.9 -4.3 ABC transporter, membrane spanning protein compare
Atu0041 -4.9 -3.3 glutamine amidotransferase compare
Atu0486 -4.8 -6.9 dihydroorotate dehydrogenase compare
Atu1359 -4.8 -1.9 dnaK deletion suppressor protein compare
Atu3739 -4.7 -4.6 phosphoglycerate kinase compare
Atu3483 -4.7 -7.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu0647 -4.7 -7.8 phosphoribosylamine--glycine ligase compare
Atu2015 -4.6 -16.5 aminotransferase compare
Atu1686 -4.5 -19.0 peptidyl-prolyl cis-trans isomerse D compare
Atu1113 -4.5 -9.0 dehydrogenase compare
Atu2650 -4.5 -18.5 glycerol-3-phosphate dehydrogenase compare
Atu2115 -4.3 -16.8 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu0723 -4.0 -3.8 FAD dependent oxidoreductase compare
Atu4096 -3.8 -15.9 nicotinate-nucleotide pyrophosphorylase compare
Atu0040 -3.8 -2.1 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0659 -3.8 -7.3 NTP pyrophosphohydrolase, MutT family compare
Atu3731 -3.7 -13.7 5-formyltetrahydrofolate cyclo-ligase compare
Atu1589 -3.7 -8.7 aminotransferase, class I compare
Atu0876 -3.5 -2.8 superoxide dismutase compare
Atu2548 -3.4 -18.1 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu3783 -3.3 -18.1 glutamate synthase subunit beta compare
Atu0602 -3.3 -11.2 glutamine synthetase compare
Atu0601 -3.2 -13.4 oxidoreductase compare
Atu4098 -3.2 -14.0 quinolinate synthetase compare
Atu3730 -3.1 -2.4 hypothetical protein compare
Atu1464 -3.1 -9.1 glycine cleavage system T protein, aminomethyltransferase compare
Atu3784 -3.0 -20.5 glutamate synthase large subunit compare
Atu4097 -2.9 -16.0 L-aspartate oxidase compare
Atu0641 -2.9 -4.7 hypothetical protein compare
Atu0030 -2.9 -2.5 phosphocarrier protein HPr compare
Atu6098 -2.8 -1.1 transcriptional regulator, HTH family compare
Atu1620 -2.6 -14.1 triosephosphate isomerase compare
Atu1462 -2.6 -13.9 glycine cleavage system protein P2 compare
Atu1748 -2.6 -10.3 NIFU-like protein compare
Atu3290 -2.6 -10.5 phosphomethylpyrimidine kinase compare
Atu2569 -2.5 -17.3 thiamine biosynthesis protein compare
Atu0999 -2.5 -8.2 magnesium transport protein compare
Atu1463 -2.5 -5.2 glycine cleavage system component H compare
Atu2155 -2.5 -18.1 methionine synthase compare
Atu3289 -2.5 -5.2 thiamine-phosphate pyrophosphorylase compare
Atu3288 -2.4 -10.1 hydroxyethylthiazole kinase compare
Atu0434 -2.4 -3.4 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2345 -2.4 -13.8 hypothetical protein conserved
Atu1446 -2.3 -3.0 two component response regulator compare
Atu1021 -2.2 -4.4 outer membrane protein compare
Atu1456 -2.2 -10.4 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu3815 -2.1 -9.3 GntR family transcriptional regulator compare
Atu2554 -2.1 -4.4 lysyl-tRNA synthetase compare
Atu3259 -2.0 -13.7 dehydrogenase conserved
Atu2346 -2.0 -12.6 ABC transporter, membrane spanning protein (sugar) compare
Atu2209 -2.0 -3.4 pyrroline-5-carboxylate reductase compare
Atu0322 -1.9 -8.2 enoyl CoA hydratase compare
Atu1685 -1.9 -1.8 hypothetical protein compare
Atu2347 -1.9 -10.5 ABC transporter, nucleotide binding/ATPase protein (sugar) compare
Atu2205 -1.8 -8.8 transcriptional regulator, MarR family compare
Atu3997 -1.8 -12.2 biotin synthetase compare
Atu0188 -1.7 -4.7 ABC transporter, membrane spanning protein (peptide) compare
Atu0421 -1.7 -2.2 ABC transporter, membrane spanning protein compare
Atu1454 -1.6 -6.8 siroheme synthase compare
Atu2831 -1.6 -7.1 glucose inhibited division protein A compare
Atu2348 -1.6 -8.8 sugar binding protein conserved
Atu0663 -1.6 -9.5 hypothetical protein conserved
Atu0062 -1.6 -7.9 transcriptional regulator, ROK family compare
Atu4217 -1.5 -2.2 TetR family transcriptional regulator compare
Atu2349 -1.5 -3.0 hypothetical protein compare
Atu6114 -1.5 -1.8 hypothetical protein compare
Atu2125 -1.5 -3.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu8115 -1.5 -3.4 Hypothetical Protein compare
Atu4173 -1.5 -3.7 phosphoenolpyruvate-protein phosphotransferase compare
Atu0388 -1.4 -8.3 two component sensor kinase compare
Atu0189 -1.3 -4.2 ABC transporter, membrane spanning protein (peptide) compare
Atu3999 -1.3 -2.9 dithiobiotin synthetase compare
Atu4711 -1.3 -5.7 two component sensor kinase compare
Atu2692 -1.2 -5.0 intracellular septation protein compare
Atu2045 -1.2 -5.7 HFLK protein compare
Atu1457 -1.2 -2.6 hypothetical protein compare
Atu0029 -1.2 -4.2 S-adenosylhomocysteine hydrolase compare
Atu0533 -1.2 -3.6 putative inhibitor of septum formation compare
Atu3998 -1.2 -8.1 8-amino-7-oxononanoate synthase compare
Atu3763 -1.2 -2.1 hypothetical protein compare
Atu6189 -1.1 -1.1 protein secretion chaperone compare
Atu1163 -1.1 -2.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0332 -1.1 -5.2 RNA polymerase sigma-54 factor compare
Atu4053 -1.1 -1.8 succinoglycan biosynthesis protein compare
Atu0912 -1.1 -1.2 Na+/H+ antiporter compare
Atu1303 -1.1 -7.2 exoribonuclease compare
Atu4000 -1.1 -7.7 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu2044 -1.1 -3.6 HFLC protein compare
Atu3910 -1.1 -3.5 LamB/YcsF family protein compare
Atu1225 -1.1 -2.0 hypothetical protein compare
Atu0086 -1.1 -1.2 ribosome-binding factor A compare
Atu2832 -1.0 -3.3 tRNA modification GTPase compare
Atu0346 -1.0 -1.3 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu4346 -1.0 -6.3 hypothetical protein compare
Atu0141 -1.0 -1.3 cytochrome O ubiquinol oxidase subunit I compare
Atu2020 -1.0 -1.1 transcriptional regulator, TetR family compare
Atu2239 -1.0 -2.7 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0658 -1.0 -5.2 phosphate permease compare
Atu1455 -1.0 -4.1 hypothetical protein compare
Atu2083 -1.0 -4.1 DNA repair protein RecN compare
Atu2207 -0.9 -4.4 two component sensor kinase compare
Atu1028 -0.9 -1.6 hypothetical protein compare
Atu0190 -0.9 -4.4 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2127 -0.9 -5.8 L-carnitine dehydratase compare
Atu0702 -0.9 -2.3 calcium-binding protein, regucalcin compare
Atu0536 -0.9 -4.6 hypothetical protein compare
Atu6153 -0.9 -2.6 conserved hypothetical protein compare
Atu2237 -0.9 -4.4 cytochrome c1 compare
Atu1774 -0.8 -4.6 ABC transporter, substrate binding protein (peptide) compare
Atu0769 -0.8 -1.6 protoheme IX farnesyltransferase compare
Atu2662 -0.8 -1.6 acetyltransferase compare
Atu0101 -0.8 -2.4 cytochrome c compare
Atu2464 -0.8 -2.6 formyltetrahydrofolate deformylase compare
Atu4001 -0.8 -5.2 3-oxoacyl-ACP synthase compare
Atu0845 -0.8 -4.2 hypothetical protein compare
Atu0405 -0.8 -6.7 long-chain-fatty-acid-CoA-ligase compare
Atu1242 -0.8 -4.7 cytochrome oxidase assembly factor compare
Atu0768 -0.8 -5.2 cytochrome-c oxidase chain I compare
Atu4635 -0.8 -2.5 hypothetical protein compare
Atu0368 -0.8 -3.3 tRNA pseudouridine synthase I compare
Atu5163 -0.8 -1.5 type IV secretion protein AvhB2 compare
Atu0837 -0.8 -3.2 transcriptional regulator, MarR family compare
Atu1851 -0.8 -2.3 BolA/YrbA family protein compare
Atu0031 -0.8 -1.2 PTS system, IIA component compare
Atu5125 -0.7 -2.9 GntR family transcriptional regulator compare
Atu0501 -0.7 -5.1 acyl-CoA dehydrogenase compare
Atu0977 -0.7 -3.5 serine protease DO-like protease compare
Atu1729 -0.7 -3.3 putative molybdenum cofactor biosynthesis protein compare
Atu5493 -0.7 -1.5 hypothetical protein compare
Atu0479 -0.7 -3.4 ABC transporter, substrate binding protein (amino acid) compare
Atu8131 -0.7 -4.9 pH adaption potassium efflux system protein compare
Atu0507 -0.7 -4.1 potassium efflux system protein compare
Atu0510 -0.7 -4.7 pH adaption potassium efflux system protein compare
Atu4040 -0.7 -3.2 hypothetical protein compare
Atu0771 -0.7 -4.7 cytochrome c oxidase subunit III compare
Atu0836 -0.7 -1.8 Glutathione-S-transferase compare
Atu2238 -0.7 -4.4 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu0185 -0.7 -1.9 methylglyoxal synthase compare
Atu0361 -0.7 -1.2 transcriptional regulator compare
Atu1014 -0.7 -5.0 aldolase compare
Atu1513 -0.7 -3.2 ABC excinuclease subunit A compare
Atu4674 -0.7 -3.9 GntR family transcriptional regulator compare
Atu2682 -0.7 -1.7 hypothetical protein compare
Atu0566 -0.7 -1.3 hypothetical protein compare
Atu0947 -0.7 -2.6 transcriptional regulator, AsnC family compare
Atu0767 -0.7 -2.7 cytochrome c oxidase subunit II compare
Atu1439 -0.7 -1.6 hypothetical protein compare
Atu0770 -0.7 -3.5 cytochrome C oxidase assembly protein compare
Atu1387 -0.7 -1.5 transcriptional regulator, GntR family compare
Atu0946 -0.7 -5.3 dehydrogenase compare
Atu0382 -0.7 -1.7 hypothetical protein compare
Atu2245 -0.6 -5.0 Na+/Pi-cotransporter compare
Atu4502 -0.6 -2.9 cobalamin synthesis protein compare
Atu1056 -0.6 -3.3 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source L-Arabinose in Agrobacterium fabrum C58

For carbon source L-Arabinose across organisms