Experiment set1IT052 for Variovorax sp. OAS795

Compare to:

L-Arabinose carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS06855 -7.8 -5.2 sugar ABC transporter ATP-binding protein conserved
ABID97_RS16595 -6.6 -5.5 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS20615 -6.3 -7.9 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS15380 -6.2 -12.2 nitrite/sulfite reductase compare
ABID97_RS16600 -6.1 -7.2 CysB family HTH-type transcriptional regulator compare
ABID97_RS06870 -6.0 -6.7 IlvD/Edd family dehydratase conserved
ABID97_RS23225 -6.0 -15.4 glutamate synthase-related protein compare
ABID97_RS07430 -5.8 -10.4 pantoate--beta-alanine ligase compare
ABID97_RS15375 -5.4 -5.7 DUF934 domain-containing protein compare
ABID97_RS22175 -5.1 -6.1 NAD-dependent succinate-semialdehyde dehydrogenase compare
ABID97_RS10885 -4.9 -4.7 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS05260 -4.8 -2.1 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS02510 -4.8 -28.0 NADP-dependent malic enzyme compare
ABID97_RS05250 -4.8 -4.7 anthranilate synthase component I compare
ABID97_RS14095 -4.6 -11.5 PAS domain S-box protein compare
ABID97_RS09180 -4.6 -3.1 DNA polymerase I compare
ABID97_RS06575 -4.4 -9.0 trehalose-phosphatase compare
ABID97_RS14905 -4.3 -11.3 2-isopropylmalate synthase compare
ABID97_RS25015 -4.1 -2.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS13990 -4.0 -2.8 amino acid aminotransferase compare
ABID97_RS06345 -3.9 -2.7 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS07405 -3.8 -16.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS13860 -3.8 -4.7 hypothetical protein compare
ABID97_RS16535 -3.8 -9.4 arginine/lysine/ornithine decarboxylase compare
ABID97_RS02600 -3.8 -2.6 homoserine O-acetyltransferase compare
ABID97_RS25085 -3.8 -3.6 2-hydroxychromene-2-carboxylate isomerase compare
ABID97_RS04855 -3.8 -2.8 CinA family protein compare
ABID97_RS07440 -3.7 -15.7 L-aspartate oxidase compare
ABID97_RS08425 -3.7 -5.1 tryptophan synthase subunit alpha compare
ABID97_RS23230 -3.6 -12.5 transposase compare
ABID97_RS07435 -3.5 -10.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS23220 -3.5 -1.9 glutamate synthase subunit beta compare
ABID97_RS05275 -3.5 -2.4 anthranilate phosphoribosyltransferase compare
ABID97_RS07415 -3.4 -14.8 quinolinate synthase NadA compare
ABID97_RS07410 -3.4 -10.1 carboxylating nicotinate-nucleotide diphosphorylase compare
ABID97_RS06860 -3.4 -5.1 ABC transporter permease conserved
ABID97_RS23425 -3.4 -3.2 tRNA-Pro compare
ABID97_RS01565 -3.3 -10.7 DNA starvation/stationary phase protection protein compare
ABID97_RS07775 -3.2 -4.2 phosphoribosylglycinamide formyltransferase compare
ABID97_RS14090 -3.2 -1.9 response regulator transcription factor compare
ABID97_RS15370 -3.2 -13.4 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS15360 -3.1 -9.5 GTP-binding protein compare
ABID97_RS23480 -3.1 -16.2 ATP-binding protein compare
ABID97_RS23455 -3.1 -3.7 hypothetical protein compare
ABID97_RS03805 -3.1 -1.8 ATP-binding protein compare
ABID97_RS21150 -3.1 -11.5 FAD-dependent oxidoreductase compare
ABID97_RS12180 -2.9 -2.8 hypothetical protein compare
ABID97_RS05280 -2.8 -1.9 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS08775 -2.8 -2.6 ribosome small subunit-dependent GTPase A compare
ABID97_RS03910 -2.7 -1.9 orotate phosphoribosyltransferase compare
ABID97_RS08435 -2.7 -1.9 phosphoribosylanthranilate isomerase compare
ABID97_RS24170 -2.7 -6.3 ATP-binding protein compare
ABID97_RS20095 -2.6 -2.5 DNA topoisomerase IV subunit B compare
ABID97_RS16470 -2.6 -1.8 translational GTPase TypA compare
ABID97_RS05765 -2.6 -2.5 UDP-glucose 4-epimerase GalE compare
ABID97_RS07500 -2.6 -3.0 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS23450 -2.5 -5.2 MBOAT family protein compare
ABID97_RS05755 -2.4 -2.8 glycosyltransferase compare
ABID97_RS17850 -2.4 -1.3 tetratricopeptide repeat protein compare
ABID97_RS06450 -2.4 -2.3 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS14100 -2.4 -11.4 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABID97_RS15465 -2.4 -11.0 sulfate ABC transporter substrate-binding protein compare
ABID97_RS00255 -2.3 -13.6 type IV pilus twitching motility protein PilT compare
ABID97_RS10590 -2.3 -11.7 nicotinate phosphoribosyltransferase compare
ABID97_RS10295 -2.2 -2.1 winged helix-turn-helix transcriptional regulator compare
ABID97_RS15365 -2.2 -6.9 sulfate adenylyltransferase subunit CysD compare
ABID97_RS06460 -2.2 -2.1 sigma 54-interacting transcriptional regulator compare
ABID97_RS23440 -2.2 -12.5 A24 family peptidase compare
ABID97_RS04505 -2.1 -2.8 ferric iron uptake transcriptional regulator compare
ABID97_RS15665 -2.1 -8.8 [protein-PII] uridylyltransferase compare
ABID97_RS04500 -2.1 -2.0 HPr(Ser) kinase/phosphatase compare
ABID97_RS02455 -2.1 -5.6 nucleotidyltransferase family protein compare
ABID97_RS02110 -2.0 -12.6 type IV pilus modification protein PilV compare
ABID97_RS12575 -2.0 -1.7 ATP-grasp domain-containing protein compare
ABID97_RS03915 -2.0 -5.9 DUF4124 domain-containing protein compare
ABID97_RS07610 -2.0 -1.4 response regulator transcription factor compare
ABID97_RS02125 -1.9 -15.1 PilC/PilY family type IV pilus protein compare
ABID97_RS02120 -1.9 -10.1 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS17595 -1.9 -8.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABID97_RS23430 -1.9 -10.9 type IV-A pilus assembly ATPase PilB compare
ABID97_RS02115 -1.9 -8.1 PilW family protein compare
ABID97_RS06160 -1.8 -8.1 GTP-binding protein compare
ABID97_RS24770 -1.8 -7.9 LacI family DNA-binding transcriptional regulator compare
ABID97_RS02145 -1.8 -8.2 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS14105 -1.8 -2.4 dihydrolipoyllysine-residue acetyltransferase compare
ABID97_RS10705 -1.8 -4.8 H-NS histone family protein compare
ABID97_RS05670 -1.8 -1.7 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS15470 -1.8 -2.7 NADPH-dependent FMN reductase compare
ABID97_RS01840 -1.8 -11.7 DUF1631 family protein compare
ABID97_RS01650 -1.8 -1.2 orotidine-5'-phosphate decarboxylase compare
ABID97_RS05750 -1.8 -2.6 glycosyltransferase compare
ABID97_RS23280 -1.7 -6.0 PilN domain-containing protein compare
ABID97_RS17970 -1.7 -6.6 protein TolQ compare
ABID97_RS08445 -1.7 -7.4 FimV/HubP family polar landmark protein compare
ABID97_RS08430 -1.7 -1.6 tryptophan synthase subunit beta compare
ABID97_RS27085 -1.7 -1.4 DNA alkylation repair protein compare
ABID97_RS25405 -1.7 -8.7 16S ribosomal RNA compare
ABID97_RS23435 -1.7 -13.4 type II secretion system F family protein compare
ABID97_RS02130 -1.7 -10.6 type IV pilin protein compare
ABID97_RS06415 -1.7 -10.1 sigma-54 dependent transcriptional regulator compare
ABID97_RS23650 -1.7 -12.5 serine/threonine-protein kinase compare
ABID97_RS07000 -1.7 -8.4 threonine ammonia-lyase, biosynthetic compare
ABID97_RS17590 -1.7 -9.7 endopeptidase La compare
ABID97_RS06825 -1.7 -2.8 LysR family transcriptional regulator compare
ABID97_RS06875 -1.7 -2.8 dihydrodipicolinate synthase family protein compare
ABID97_RS19955 -1.7 -1.5 glycerol-3-phosphate dehydrogenase compare
ABID97_RS15995 -1.7 -4.9 PilZ domain-containing protein compare
ABID97_RS04605 -1.7 -8.5 glutamate--cysteine ligase compare
ABID97_RS16690 -1.6 -6.6 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS06865 -1.6 -2.5 galactofuranose ABC transporter, permease protein YjfF compare
ABID97_RS23270 -1.6 -8.5 pilus assembly protein PilP compare
ABID97_RS08710 -1.6 -6.5 polynucleotide adenylyltransferase PcnB compare
ABID97_RS02140 -1.6 -7.9 sugar transferase compare
ABID97_RS23265 -1.6 -5.6 type IV pilus secretin PilQ compare
ABID97_RS03800 -1.6 -2.6 O-antigen ligase family protein compare
ABID97_RS24705 -1.6 -5.6 response regulator compare
ABID97_RS24040 -1.6 -2.4 MarR family transcriptional regulator compare
ABID97_RS09935 -1.6 -8.2 hypothetical protein compare
ABID97_RS08220 -1.6 -9.7 phosphoenolpyruvate carboxylase compare
ABID97_RS02460 -1.6 -10.9 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS22705 -1.6 -9.3 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS01825 -1.5 -9.8 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS02210 -1.5 -8.4 pilin compare
ABID97_RS06175 -1.5 -11.0 STAS domain-containing protein compare
ABID97_RS20020 -1.5 -2.7 LacI family DNA-binding transcriptional regulator compare
ABID97_RS14625 -1.5 -6.3 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS06600 -1.5 -3.7 5-formyltetrahydrofolate cyclo-ligase compare
ABID97_RS24045 -1.5 -4.9 type II toxin-antitoxin system prevent-host-death family antitoxin compare
ABID97_RS14160 -1.5 -5.5 cell division protein ZapE compare
ABID97_RS23285 -1.5 -9.7 pilus assembly protein PilM compare
ABID97_RS20520 -1.5 -2.1 polyribonucleotide nucleotidyltransferase compare
ABID97_RS23380 -1.5 -8.9 lytic transglycosylase domain-containing protein compare
ABID97_RS02135 -1.5 -5.4 GspH/FimT family pseudopilin compare
ABID97_RS03680 -1.5 -5.2 lysophospholipid transporter LplT compare
ABID97_RS15490 -1.5 -4.6 FMNH2-dependent alkanesulfonate monooxygenase compare
ABID97_RS03720 -1.5 -1.5 4-hydroxy-2-oxoheptanedioate aldolase compare
ABID97_RS24055 -1.5 -3.1 TetR/AcrR family transcriptional regulator compare
ABID97_RS16785 -1.4 -2.6 transporter compare
ABID97_RS17895 -1.4 -5.5 transcriptional regulator NrdR compare
ABID97_RS10695 -1.4 -6.2 YbhB/YbcL family Raf kinase inhibitor-like protein compare
ABID97_RS05370 -1.4 -4.7 ATP-binding protein compare
ABID97_RS17200 -1.4 -10.7 ribonuclease R compare
ABID97_RS24690 -1.4 -7.4 methyl-accepting chemotaxis protein compare
ABID97_RS05365 -1.4 -3.3 DUF4390 domain-containing protein compare
ABID97_RS23275 -1.4 -7.3 type 4a pilus biogenesis protein PilO compare
ABID97_RS08200 -1.4 -7.7 LytTR family DNA-binding domain-containing protein compare
ABID97_RS13865 -1.4 -3.3 hypothetical protein compare
ABID97_RS16695 -1.4 -9.5 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS19550 -1.3 -1.4 phosphatase PAP2 family protein compare
ABID97_RS20265 -1.3 -3.1 site-specific tyrosine recombinase XerD compare
ABID97_RS21165 -1.3 -3.8 energy-dependent translational throttle protein EttA compare
ABID97_RS06850 -1.3 -2.9 multiple monosaccharide ABC transporter permease compare
ABID97_RS02200 -1.3 -10.9 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABID97_RS27015 -1.3 -1.5 DoxX family protein compare
ABID97_RS25525 -1.3 -4.1 LacI family DNA-binding transcriptional regulator compare
ABID97_RS08350 -1.3 -8.6 translation elongation factor 4 compare
ABID97_RS12140 -1.3 -5.0 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS21945 -1.3 -2.3 hemolysin family protein compare
ABID97_RS15480 -1.3 -6.1 sulfonate ABC transporter substrate-binding protein compare
ABID97_RS28220 -1.3 -1.7 SDR family oxidoreductase compare
ABID97_RS22965 -1.3 -8.3 ClpXP protease specificity-enhancing factor compare
ABID97_RS06840 -1.3 -3.6 multiple monosaccharide ABC transporter substrate-binding protein compare
ABID97_RS17635 -1.3 -3.8 presqualene diphosphate synthase HpnD compare
ABID97_RS25745 -1.3 -1.8 dipeptide ABC transporter ATP-binding protein compare
ABID97_RS22860 -1.3 -2.3 MurR/RpiR family transcriptional regulator compare
ABID97_RS17600 -1.2 -1.9 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABID97_RS03640 -1.2 -3.5 SMP-30/gluconolactonase/LRE family protein compare
ABID97_RS14540 -1.2 -1.9 transcriptional regulator compare
ABID97_RS14850 -1.2 -2.0 P-II family nitrogen regulator compare
ABID97_RS06190 -1.2 -3.3 division/cell wall cluster transcriptional repressor MraZ compare
ABID97_RS18205 -1.2 -2.4 XRE family transcriptional regulator compare
ABID97_RS15955 -1.1 -6.6 iron-containing alcohol dehydrogenase compare
ABID97_RS29375 -1.1 -1.3 VOC family protein compare
ABID97_RS20125 -1.1 -6.0 4-hydroxy-tetrahydrodipicolinate synthase compare
ABID97_RS06315 -1.1 -8.2 YqiA/YcfP family alpha/beta fold hydrolase compare
ABID97_RS11545 -1.1 -1.1 branched-chain amino acid ABC transporter permease compare
ABID97_RS25345 -1.1 -5.8 transporter associated domain-containing protein compare
ABID97_RS23485 -1.1 -1.3 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABID97_RS07850 -1.1 -5.9 ABC transporter ATP-binding protein compare
ABID97_RS14975 -1.1 -3.1 hypothetical protein compare
ABID97_RS29015 -1.0 -1.1 transcriptional regulator GcvA compare
ABID97_RS10685 -1.0 -5.9 hypothetical protein compare
ABID97_RS20905 -1.0 -2.3 hypothetical protein compare
ABID97_RS07630 -1.0 -2.1 cytochrome o ubiquinol oxidase subunit III compare
ABID97_RS08360 -1.0 -5.1 DUF4845 domain-containing protein compare
ABID97_RS15495 -1.0 -2.8 aliphatic sulfonate ABC transporter permease SsuC compare
ABID97_RS21605 -1.0 -2.9 metalloregulator ArsR/SmtB family transcription factor compare
ABID97_RS13750 -1.0 -1.0 hypothetical protein compare
ABID97_RS23790 -1.0 -4.0 ATP-binding cassette domain-containing protein compare
ABID97_RS16985 -1.0 -1.9 transcriptional repressor LexA compare
ABID97_RS09595 -1.0 -1.2 Arc family DNA-binding protein compare
ABID97_RS26895 -1.0 -1.7 citrate synthase family protein compare
ABID97_RS14890 -1.0 -3.5 acetolactate synthase small subunit compare
ABID97_RS13815 -1.0 -1.4 phage major capsid protein compare
ABID97_RS14200 -1.0 -3.8 pseudouridine synthase compare
ABID97_RS08195 -1.0 -3.8 histidine kinase compare
ABID97_RS25125 -1.0 -5.6 enoyl-CoA hydratase/isomerase family protein compare
ABID97_RS22135 -1.0 -0.9 LysR family transcriptional regulator compare
ABID97_RS11960 -1.0 -0.8 hypothetical protein compare
ABID97_RS15150 -1.0 -1.0 phage tail assembly protein compare


Specific Phenotypes

For 15 genes in this experiment

For carbon source L-Arabinose in Variovorax sp. OAS795

For carbon source L-Arabinose across organisms