Experiment set1IT052 for Serratia liquefaciens MT49

Compare to:

Nickel (II) chloride hexahydrate 80 uM, aerobic

200 most detrimental genes:

  gene name fitness t score description  
IAI46_24465 +1.3 5.7 HTH-type transcriptional repressor FabR compare
IAI46_17665 +1.3 1.9 NADH-quinone oxidoreductase subunit NuoK compare
IAI46_13970 +1.2 3.2 type I DNA topoisomerase compare
IAI46_14385 +1.0 2.7 GNAT family N-acetyltransferase compare
IAI46_07875 +1.0 1.6 hypothetical protein compare
IAI46_14170 +1.0 2.7 DUF1937 family protein compare
IAI46_10145 +0.9 2.1 hypothetical protein compare
IAI46_05705 +0.9 2.2 hypothetical protein compare
IAI46_16170 +0.7 3.1 3-oxoadipate enol-lactonase compare
IAI46_08930 +0.7 2.6 acyltransferase family protein compare
IAI46_12765 +0.7 3.0 cytochrome c compare
IAI46_24315 +0.7 2.0 4-oxalocrotonate tautomerase family protein compare
IAI46_15965 +0.7 2.3 flagellar basal body P-ring formation protein FlgA compare
IAI46_14600 +0.7 4.6 murein DD-endopeptidase MepM compare
IAI46_24255 +0.7 5.4 response regulator compare
IAI46_20660 +0.7 1.6 chaperone modulator CbpM compare
IAI46_11810 +0.7 2.7 isochorismatase family protein compare
IAI46_12665 +0.7 1.8 aldehyde dehydrogenase family protein compare
IAI46_00620 +0.7 2.8 dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase compare
IAI46_11320 +0.6 2.3 superoxide dismutase family protein compare
IAI46_01070 +0.6 1.1 SCP2 domain-containing protein compare
IAI46_06650 +0.6 2.7 tRNA dihydrouridine(16) synthase DusC compare
IAI46_13585 +0.6 1.5 hypothetical protein compare
IAI46_01910 +0.6 1.5 preprotein translocase subunit SecG compare
IAI46_15020 +0.6 2.4 hypothetical protein compare
IAI46_13040 +0.6 1.7 AraC family transcriptional regulator compare
IAI46_11795 +0.6 1.2 xanthine dehydrogenase accessory protein XdhC compare
IAI46_11305 +0.6 1.4 DUF1289 domain-containing protein compare
IAI46_03625 +0.6 1.9 hypothetical protein compare
IAI46_19345 +0.6 1.9 iron-sulfur cluster assembly protein IscA compare
IAI46_09745 +0.6 1.7 antibiotic biosynthesis monooxygenase compare
IAI46_11430 +0.6 1.6 cupin domain-containing protein compare
IAI46_12560 +0.6 1.6 hydrogenase formation protein HypD compare
IAI46_19820 +0.6 1.8 N-acetyltransferase compare
IAI46_12960 +0.6 1.2 PTS transporter subunit EIIB compare
IAI46_16515 +0.6 2.0 diacylglycerol kinase compare
IAI46_15295 +0.6 1.3 hypothetical protein compare
IAI46_09375 +0.6 0.9 TraR/DksA family transcriptional regulator compare
IAI46_11725 +0.6 2.1 GNAT family N-acetyltransferase compare
IAI46_11860 +0.6 1.5 HlyD family efflux transporter periplasmic adaptor subunit compare
IAI46_11465 +0.6 1.7 electron transport complex subunit RsxG compare
IAI46_07125 +0.6 0.9 SDR family oxidoreductase compare
IAI46_13960 +0.6 1.3 hypothetical protein compare
IAI46_23630 +0.5 1.1 PTS lactose/cellobiose transporter subunit IIA compare
IAI46_07275 +0.5 2.0 FAD-dependent oxidoreductase compare
IAI46_06660 +0.5 1.8 winged helix-turn-helix domain-containing protein compare
IAI46_24245 +0.5 3.7 molybdopterin-dependent oxidoreductase compare
IAI46_12525 +0.5 1.6 respiratory chain complex I subunit 1 family protein compare
IAI46_02445 +0.5 2.3 hypothetical protein compare
IAI46_09370 +0.5 2.1 hypothetical protein compare
IAI46_01780 +0.5 2.8 gamma-glutamylcyclotransferase compare
IAI46_06040 +0.5 1.7 tRNA-Met compare
IAI46_13245 +0.5 2.2 methylated-DNA--[protein]-cysteine S-methyltransferase compare
IAI46_11865 +0.5 3.2 peptidase domain-containing ABC transporter compare
IAI46_11530 +0.5 2.3 oxidoreductase compare
IAI46_15150 +0.5 0.8 hypothetical protein compare
IAI46_10865 +0.5 2.0 fructosamine kinase family protein compare
IAI46_12725 +0.5 1.2 TetR/AcrR family transcriptional regulator compare
IAI46_11610 +0.5 1.3 LysR family transcriptional regulator compare
IAI46_21200 +0.5 1.4 RNA 2',3'-cyclic phosphodiesterase compare
IAI46_18900 +0.5 2.1 phosphate ABC transporter ATP-binding protein compare
IAI46_11160 +0.5 1.9 Fe-S cluster assembly protein SufD compare
IAI46_22310 +0.5 2.2 DnaA initiator-associating protein DiaA compare
IAI46_11085 +0.5 1.6 hemin-degrading factor compare
IAI46_09570 +0.5 0.9 hypothetical protein compare
IAI46_06925 +0.5 1.2 ParD-like family protein compare
IAI46_11715 +0.5 2.3 YnfA family protein compare
IAI46_13870 +0.5 2.4 exoribonuclease II compare
IAI46_11835 +0.5 2.0 winged helix-turn-helix transcriptional regulator compare
IAI46_11470 +0.5 2.0 electron transport complex subunit RsxD compare
IAI46_19765 +0.5 0.9 hypothetical protein compare
IAI46_04675 +0.5 2.0 nuclear transport factor 2 family protein compare
IAI46_19045 +0.5 1.3 GntR family transcriptional regulator compare
IAI46_11475 +0.5 1.3 helix-turn-helix domain-containing protein compare
IAI46_13485 +0.5 1.5 phage shock protein PspD compare
IAI46_22630 +0.5 1.9 zinc ribbon domain-containing protein compare
IAI46_23950 +0.5 1.8 YhgN family NAAT transporter compare
IAI46_00615 +0.5 1.8 glucose-1-phosphate thymidylyltransferase RfbA compare
IAI46_21710 +0.5 1.3 type II toxin-antitoxin system ParD family antitoxin compare
IAI46_17300 +0.5 2.4 phosphatase PAP2 family protein compare
IAI46_09305 +0.5 2.0 hypothetical protein compare
IAI46_18720 +0.5 2.2 GNAT family N-acetyltransferase compare
IAI46_12080 +0.5 1.5 amino acid ABC transporter ATP-binding protein compare
IAI46_14855 +0.5 2.2 MBL fold metallo-hydrolase compare
IAI46_12195 +0.5 0.8 CopG family transcriptional regulator compare
IAI46_04970 +0.4 1.5 cytochrome o ubiquinol oxidase subunit IV compare
IAI46_12320 +0.4 1.4 sigma-54-dependent Fis family transcriptional regulator compare
IAI46_11590 +0.4 1.3 NUDIX hydrolase compare
IAI46_13320 +0.4 1.3 serine protease compare
IAI46_14615 +0.4 1.4 zinc ABC transporter permease subunit ZnuB compare
IAI46_21570 +0.4 3.1 helix-turn-helix transcriptional regulator compare
IAI46_10625 +0.4 1.3 HutD family protein compare
IAI46_13795 +0.4 1.6 stationary-phase-induced ribosome-associated protein compare
IAI46_19325 +0.4 1.7 Fe-S cluster assembly protein IscX compare
IAI46_09360 +0.4 1.2 Pyocin large subunit compare
IAI46_06150 +0.4 1.2 helix-turn-helix transcriptional regulator compare
IAI46_16435 +0.4 0.9 RidA family protein compare
IAI46_13095 +0.4 1.4 ABC transporter ATP-binding protein compare
IAI46_21455 +0.4 0.7 YggL family protein compare
IAI46_04360 +0.4 2.2 Na(+)-translocating NADH-quinone reductase subunit A compare
IAI46_10450 +0.4 1.5 hypothetical protein compare
IAI46_12270 +0.4 0.8 ABC transporter substrate-binding protein compare
IAI46_09365 +0.4 2.1 replication protein compare
IAI46_19160 +0.4 1.5 lipoprotein compare
IAI46_10695 +0.4 1.9 Zn-dependent hydrolase compare
IAI46_19080 +0.4 1.4 DNA-binding transcriptional repressor compare
IAI46_08835 +0.4 1.6 intermembrane transport protein PqiB compare
IAI46_15510 +0.4 0.8 respiratory nitrate reductase subunit gamma compare
IAI46_10760 +0.4 1.3 spore coat protein U domain-containing protein compare
IAI46_03790 +0.4 2.6 RNA polymerase sigma factor RpoS compare
IAI46_11760 +0.4 1.3 carbohydrate ABC transporter permease compare
IAI46_18530 +0.4 1.9 YgiW/YdeI family stress tolerance OB fold protein compare
IAI46_19335 +0.4 2.5 Fe-S protein assembly chaperone HscA compare
IAI46_08235 +0.4 1.1 agmatinase compare
IAI46_13460 +0.4 1.1 L-Ala-D/L-Glu epimerase compare
IAI46_09035 +0.4 1.9 pyrimidine utilization protein D compare
IAI46_01120 +0.4 1.5 NAD(P)H-flavin reductase compare
IAI46_10915 +0.4 2.3 cytochrome c compare
IAI46_11920 +0.4 1.3 chromate transporter compare
IAI46_04980 +0.4 3.0 cytochrome o ubiquinol oxidase subunit I compare
IAI46_21110 +0.4 2.7 aromatic ring-hydroxylating dioxygenase subunit alpha compare
IAI46_16355 +0.4 1.5 1,2-phenylacetyl-CoA epoxidase subunit B compare
IAI46_18590 +0.4 1.5 hypothetical protein compare
IAI46_05590 +0.4 0.8 DotU family type IV/VI secretion system protein compare
IAI46_12615 +0.4 0.8 hypothetical protein compare
IAI46_09985 +0.4 1.4 RNA polymerase-binding protein DksA compare
IAI46_12845 +0.4 1.5 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase compare
IAI46_01500 +0.4 1.0 DUF4156 domain-containing protein compare
IAI46_07550 +0.4 1.3 adenylate kinase compare
IAI46_02440 +0.4 1.0 hypothetical protein compare
IAI46_05440 +0.4 1.7 AraC family transcriptional regulator compare
IAI46_04365 +0.4 2.7 NADH:ubiquinone reductase (Na(+)-transporting) subunit B compare
IAI46_09615 +0.4 2.0 YceK/YidQ family lipoprotein compare
IAI46_18595 +0.4 1.8 DUF2570 family protein compare
IAI46_20560 +0.4 1.6 PTS sugar transporter subunit IIA compare
IAI46_13800 +0.4 1.2 hypothetical protein compare
IAI46_12670 +0.4 1.3 MarR family transcriptional regulator compare
IAI46_19385 +0.4 2.4 stationary phase inducible protein CsiE compare
IAI46_12095 +0.4 1.6 LLM class flavin-dependent oxidoreductase compare
IAI46_04110 +0.4 1.2 2,5-didehydrogluconate reductase DkgB compare
IAI46_00625 +0.4 2.3 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
IAI46_24895 +0.4 0.9 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase compare
IAI46_13740 +0.4 1.6 KilA-N domain-containing protein compare
IAI46_14315 +0.4 1.5 selenide, water dikinase SelD compare
IAI46_13850 +0.4 1.9 serine-type D-Ala-D-Ala carboxypeptidase DacD compare
IAI46_14745 +0.4 1.4 lipoprotein compare
IAI46_15610 +0.4 1.0 two-component system response regulator NarL compare
IAI46_03305 +0.4 0.9 thiamine ABC transporter ATP-binding protein ThiQ compare
IAI46_04370 +0.4 2.4 Na(+)-translocating NADH-quinone reductase subunit C compare
IAI46_24250 +0.4 3.0 response regulator compare
IAI46_12790 +0.4 1.2 MurR/RpiR family transcriptional regulator compare
IAI46_00555 +0.4 2.7 insulinase family protein compare
IAI46_22585 +0.4 2.6 type II toxin-antitoxin system RelE/ParE family toxin compare
IAI46_17690 +0.4 1.0 NADH-quinone oxidoreductase subunit NuoF compare
IAI46_12285 +0.4 1.0 Lrp/AsnC family transcriptional regulator compare
IAI46_10390 +0.4 1.9 two-component system sensor histidine kinase PhoQ compare
IAI46_22385 +0.4 1.1 DUF1043 family protein compare
IAI46_20965 +0.4 1.8 carbohydrate kinase compare
IAI46_16880 +0.4 1.8 ABC transporter ATP-binding protein compare
IAI46_06130 +0.4 1.3 LexA regulated protein compare
IAI46_13475 +0.4 1.5 TIGR01620 family protein compare
IAI46_15945 +0.4 1.7 flagellar hook protein FlgE compare
IAI46_12660 +0.4 0.8 NAD(P)H-dependent oxidoreductase compare
IAI46_02835 +0.4 0.8 tRNA-Leu compare
IAI46_14890 +0.4 0.9 PhoP/PhoQ regulator MgrB compare
IAI46_23875 +0.3 1.3 PTS ascorbate transporter subunit IIA compare
IAI46_01285 +0.3 2.8 response regulator compare
IAI46_12785 +0.3 1.4 MFS transporter compare
IAI46_22135 +0.3 0.7 G/U mismatch-specific DNA glycosylase compare
IAI46_24470 +0.3 2.5 Si-specific NAD(P)(+) transhydrogenase compare
IAI46_08040 +0.3 0.9 acyltransferase compare
IAI46_12290 +0.3 1.5 succinylglutamate desuccinylase/aspartoacylase family protein compare
IAI46_12345 +0.3 1.0 LysR family transcriptional regulator compare
IAI46_00570 +0.3 1.8 exopolyphosphatase compare
IAI46_09725 +0.3 1.2 biofilm formation regulator BssS compare
IAI46_09960 +0.3 1.7 phosphatase compare
IAI46_06195 +0.3 1.6 DUF1722 domain-containing protein compare
IAI46_14255 +0.3 1.6 patatin-like phospholipase RssA compare
IAI46_15585 +0.3 1.7 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI46_13210 +0.3 1.3 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC compare
IAI46_21620 +0.3 0.7 hypothetical protein compare
IAI46_09400 +0.3 1.1 hypothetical protein compare
IAI46_10235 +0.3 1.6 dihydrofolate reductase compare
IAI46_15950 +0.3 0.7 flagellar hook assembly protein FlgD compare
IAI46_12065 +0.3 1.8 peptidoglycan synthase compare
IAI46_03560 +0.3 2.3 hypothetical protein compare
IAI46_10365 +0.3 2.1 glycoside hydrolase compare
IAI46_13170 +0.3 1.5 pyridoxal kinase compare
IAI46_04355 +0.3 1.4 hypothetical protein compare
IAI46_14010 +0.3 1.2 threonylcarbamoyl-AMP synthase compare
IAI46_20315 +0.3 2.1 SecY-interacting protein compare
IAI46_07605 +0.3 1.7 NAD(P)-dependent oxidoreductase compare
IAI46_06190 +0.3 1.2 YbfA family protein compare
IAI46_09150 +0.3 1.6 dihydrodipicolinate synthase family protein compare
IAI46_10500 +0.3 1.2 hypothetical protein compare
IAI46_13130 +0.3 1.6 transporter compare
IAI46_12105 +0.3 0.9 LysR family transcriptional regulator compare
IAI46_23760 +0.3 1.8 ribosome-associated heat shock protein Hsp15 compare
IAI46_03895 +0.3 2.0 glutamate--cysteine ligase compare
IAI46_14335 +0.3 1.5 bifunctional nicotinamidase/pyrazinamidase compare


Specific Phenotypes

None in this experiment

For Serratia liquefaciens MT49 in stress experiments

For stress Nickel (II) chloride hexahydrate across organisms